Wall clock time and date at job start Wed Apr 1 2020 02:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46509 * 109.47073 * 2 1 4 4 N 1.28429 * 125.18772 * 275.15693 * 3 2 1 5 5 C 1.30846 * 110.98004 * 179.97438 * 4 3 2 6 6 C 1.39806 * 107.87215 * 359.73933 * 5 4 3 7 7 Cl 1.73601 * 127.33322 * 180.26241 * 6 5 4 8 8 C 1.36749 * 125.18317 * 95.11539 * 3 2 1 9 9 C 1.47029 * 126.90823 * 0.04117 * 8 3 2 10 10 O 1.21646 * 119.99668 * 267.06844 * 9 8 3 11 11 N 1.34773 * 119.99997 * 87.05982 * 9 8 3 12 12 C 1.46500 * 119.99815 * 174.71421 * 11 9 8 13 13 C 1.53005 * 109.47256 * 180.02562 * 12 11 9 14 14 H 1.08998 * 110.63918 * 303.30996 * 13 12 11 15 15 C 1.54329 * 110.71841 * 66.45506 * 13 12 11 16 16 N 1.47023 * 107.39936 * 140.47978 * 15 13 12 17 17 C 1.36937 * 125.64265 * 181.10067 * 16 15 13 18 18 H 1.07996 * 120.00320 * 359.97438 * 17 16 15 19 19 C 1.38819 * 119.99611 * 179.97438 * 17 16 15 20 20 N 1.31613 * 119.99919 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99888 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47071 * 359.97438 * 21 19 17 23 23 H 1.48490 * 109.47218 * 120.00032 * 21 19 17 24 24 H 1.48504 * 109.46857 * 240.00359 * 21 19 17 25 25 C 1.47748 * 108.53129 * 1.17868 * 16 15 13 26 26 C 1.54908 * 104.83951 * 335.75169 * 25 16 15 27 27 H 1.08995 * 111.03707 * 279.00383 * 26 25 16 28 28 O 1.42908 * 111.00217 * 155.16957 * 26 25 16 29 29 H 1.09000 * 109.46792 * 300.00217 * 1 2 3 30 30 H 1.09001 * 109.47389 * 59.99333 * 1 2 3 31 31 H 1.08999 * 109.47434 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47352 * 240.00506 * 2 1 3 33 33 H 1.08994 * 109.47417 * 120.00283 * 2 1 3 34 34 H 1.07996 * 126.05618 * 180.02562 * 5 4 3 35 35 H 0.97000 * 120.00860 * 354.71796 * 11 9 8 36 36 H 1.09004 * 109.47394 * 60.00101 * 12 11 9 37 37 H 1.09007 * 109.47216 * 300.00417 * 12 11 9 38 38 H 1.09001 * 109.87594 * 259.97284 * 15 13 12 39 39 H 1.09001 * 109.87964 * 20.98488 * 15 13 12 40 40 H 0.97002 * 119.99723 * 179.97438 * 20 19 17 41 41 H 1.08998 * 110.28797 * 216.94344 * 25 16 15 42 42 H 1.09003 * 110.52454 * 94.67527 * 25 16 15 43 43 H 0.96693 * 113.99730 * 67.79823 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.1761 2.1105 -1.0454 5 6 2.6256 3.2970 -0.7255 6 6 2.7675 3.3415 0.6647 7 17 3.3216 4.6781 1.6240 8 6 2.3749 2.0910 1.1132 9 6 2.3426 1.6228 2.5066 10 8 1.3595 1.8258 3.1937 11 7 3.4021 0.9688 3.0225 12 6 3.4181 0.6045 4.4414 13 6 4.7242 -0.1230 4.7665 14 1 4.8462 -0.9976 4.1276 15 6 5.9299 0.8298 4.6242 16 7 6.8580 0.5319 5.7249 17 6 8.0426 1.1752 5.9659 18 1 8.3637 1.9767 5.3173 19 6 8.8308 0.7969 7.0442 20 7 8.4398 -0.1803 7.8344 21 14 10.4465 1.6747 7.3736 22 1 10.6560 2.7273 6.3473 23 1 10.4057 2.2975 8.7209 24 1 11.5623 0.6967 7.3138 25 6 6.2982 -0.5776 6.5238 26 6 4.7719 -0.5222 6.2651 27 1 4.2970 0.2367 6.8869 28 8 4.1702 -1.8015 6.4738 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.8434 4.1008 -1.4130 35 1 4.1541 0.7392 2.4544 36 1 2.5737 -0.0498 4.6581 37 1 3.3440 1.5065 5.0490 38 1 6.4239 0.6620 3.6671 39 1 5.5945 1.8647 4.6918 40 1 8.9908 -0.4448 8.5877 41 1 6.5094 -0.4253 7.5823 42 1 6.7051 -1.5322 6.1901 43 1 4.1766 -2.0934 7.3956 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958095821.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:08 Heat of formation + Delta-G solvation = 16.487241 kcal Electronic energy + Delta-G solvation = -27755.977226 eV Core-core repulsion = 23671.921061 eV Total energy + Delta-G solvation = -4084.056165 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.125 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.90949 -39.68434 -38.22517 -36.77727 -35.28633 -34.91293 -34.75750 -32.41772 -31.23171 -30.14396 -29.62328 -27.62651 -25.79167 -24.61826 -23.97527 -22.63302 -21.87846 -20.69261 -20.15440 -19.73056 -18.41500 -17.13761 -16.88289 -16.53634 -16.37283 -15.74647 -15.61861 -15.24213 -14.85038 -14.66444 -14.33615 -14.01092 -13.78052 -13.69859 -13.25662 -13.07058 -12.88266 -12.56467 -12.48386 -12.07866 -12.04095 -11.91886 -11.75919 -11.62687 -11.31040 -11.06470 -10.87137 -10.73466 -10.69249 -10.45847 -10.08743 -9.93898 -9.74708 -9.59549 -9.25772 -9.18596 -9.00914 -8.76008 -6.96033 -5.76194 -3.18401 1.19635 1.51208 2.09609 2.19541 2.51416 2.98710 3.34580 3.40578 3.42807 4.07037 4.26658 4.38916 4.45488 4.59850 4.63834 4.70887 4.90197 4.91259 5.07914 5.13459 5.15956 5.32079 5.37197 5.41464 5.58416 5.65038 5.83573 5.87123 5.90093 5.96169 6.10583 6.19431 6.28336 6.33602 6.51184 6.73031 7.22777 7.28465 7.50276 7.59918 7.69046 7.87123 8.08464 8.22895 9.09801 9.70890 10.33733 11.28349 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.013255 B = 0.002969 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.905073 B = 9429.827109 C =10782.704897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.115 3.885 3 N -0.263 5.263 4 N -0.270 5.270 5 C 0.023 3.977 6 C -0.114 4.114 7 Cl -0.016 7.016 8 C -0.010 4.010 9 C 0.589 3.411 10 O -0.515 6.515 11 N -0.706 5.706 12 C 0.132 3.868 13 C -0.105 4.105 14 H 0.087 0.913 15 C 0.140 3.860 16 N -0.600 5.600 17 C -0.224 4.224 18 H 0.080 0.920 19 C -0.010 4.010 20 N -0.923 5.923 21 Si 0.916 3.084 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.128 3.872 26 C 0.082 3.918 27 H 0.062 0.938 28 O -0.570 6.570 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.109 0.891 33 H 0.101 0.899 34 H 0.195 0.805 35 H 0.405 0.595 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.024 0.976 39 H 0.030 0.970 40 H 0.253 0.747 41 H 0.109 0.891 42 H 0.023 0.977 43 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.287 0.692 -14.603 20.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.005 4.005 3 N -0.052 5.052 4 N -0.100 5.100 5 C -0.155 4.155 6 C -0.152 4.152 7 Cl 0.013 6.987 8 C -0.140 4.140 9 C 0.371 3.629 10 O -0.388 6.388 11 N -0.358 5.358 12 C 0.009 3.991 13 C -0.124 4.124 14 H 0.105 0.895 15 C 0.014 3.986 16 N -0.328 5.328 17 C -0.352 4.352 18 H 0.098 0.902 19 C -0.206 4.206 20 N -0.571 5.571 21 Si 0.747 3.253 22 H -0.204 1.204 23 H -0.216 1.216 24 H -0.217 1.217 25 C 0.002 3.998 26 C 0.022 3.978 27 H 0.080 0.920 28 O -0.375 6.375 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.127 0.873 33 H 0.120 0.880 34 H 0.212 0.788 35 H 0.240 0.760 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.042 0.958 39 H 0.048 0.952 40 H 0.063 0.937 41 H 0.127 0.873 42 H 0.041 0.959 43 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -15.232 0.172 -15.405 21.665 hybrid contribution 1.693 0.941 1.168 2.262 sum -13.539 1.113 -14.237 19.679 Atomic orbital electron populations 1.22185 0.92885 1.03931 1.03955 1.22140 0.96664 0.75975 1.05673 1.45763 1.45334 1.12341 1.01721 1.73218 1.19165 1.04226 1.13434 1.23526 1.03651 0.95610 0.92720 1.21280 1.10711 0.90452 0.92756 1.98380 1.87686 1.42274 1.70357 1.21289 1.09231 0.93625 0.89865 1.16825 0.83580 0.78402 0.84137 1.90872 1.32365 1.55218 1.60394 1.46039 1.20361 1.57051 1.12300 1.21573 0.98292 0.99865 0.79355 1.22413 0.93694 0.98734 0.97573 0.89507 1.21372 0.89065 0.95668 0.92500 1.44383 1.20886 1.38931 1.28568 1.19137 0.94338 1.12512 1.09194 0.90173 1.24802 0.99265 0.98614 0.97904 1.69762 1.38023 1.30695 1.18636 0.85969 0.82913 0.78629 0.77820 1.20426 1.21647 1.21689 1.22590 0.86045 0.90465 1.00651 1.23300 0.96565 0.84052 0.93896 0.92017 1.86357 1.82257 1.36491 1.32345 0.91201 0.91153 0.89669 0.87286 0.88049 0.78795 0.76001 0.90616 0.90727 0.95795 0.95171 0.93659 0.87299 0.95926 0.77526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.20 10.24 37.16 0.38 -0.81 16 2 C 0.11 0.86 6.91 -4.04 -0.03 0.84 16 3 N -0.26 -2.81 3.35 -57.10 -0.19 -3.00 16 4 N -0.27 -2.99 11.89 30.61 0.36 -2.63 16 5 C 0.02 0.24 12.04 -17.39 -0.21 0.03 16 6 C -0.11 -1.39 6.89 -38.88 -0.27 -1.66 16 7 Cl -0.02 -0.19 29.24 -51.86 -1.52 -1.71 16 8 C -0.01 -0.12 6.72 -82.00 -0.55 -0.67 16 9 C 0.59 8.14 6.91 -12.70 -0.09 8.05 16 10 O -0.51 -8.72 17.12 5.24 0.09 -8.63 16 11 N -0.71 -8.94 5.39 -61.50 -0.33 -9.27 16 12 C 0.13 1.88 5.00 -4.04 -0.02 1.86 16 13 C -0.10 -1.70 2.75 -88.78 -0.24 -1.95 16 14 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 15 C 0.14 2.72 6.52 -3.06 -0.02 2.70 16 16 N -0.60 -14.70 3.41 -169.81 -0.58 -15.28 16 17 C -0.22 -6.04 10.28 -15.06 -0.15 -6.20 16 18 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 19 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 20 N -0.92 -25.98 10.11 55.49 0.56 -25.42 16 21 Si 0.92 21.57 29.55 -169.99 -5.02 16.55 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 C 0.13 2.94 5.65 -2.35 -0.01 2.93 16 26 C 0.08 1.48 3.88 -24.58 -0.10 1.38 16 27 H 0.06 1.09 8.05 -51.93 -0.42 0.67 16 28 O -0.57 -9.22 13.47 -35.23 -0.47 -9.70 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.10 0.70 7.65 -51.93 -0.40 0.30 16 34 H 0.20 1.41 8.06 -52.49 -0.42 0.98 16 35 H 0.41 4.53 8.31 -40.82 -0.34 4.19 16 36 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.07 1.14 8.06 -51.93 -0.42 0.73 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.03 0.59 7.76 -51.93 -0.40 0.19 16 40 H 0.25 6.90 8.31 -40.82 -0.34 6.57 16 41 H 0.11 2.80 5.88 -51.93 -0.31 2.50 16 42 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.38 4.73 9.12 45.56 0.42 5.14 16 LS Contribution 378.27 15.07 5.70 5.70 Total: -1.00 -32.98 378.27 -8.02 -41.00 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -5.22 Total: 6.28 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: -1.41 Total: 6.11 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: -0.18 Total: -55.60 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: -0.38 Total: -18.33 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -1.52 Total: -1.71 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.98 -8.02 -41.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958095821.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.491 kcal (2) G-P(sol) polarization free energy of solvation -32.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds