Wall clock time and date at job start Wed Apr 1 2020 03:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36937 * 119.99923 * 2 1 4 4 H 1.08004 * 119.99799 * 159.76248 * 3 2 1 5 5 C 1.38805 * 120.00289 * 339.76557 * 3 2 1 6 6 N 1.31621 * 119.99999 * 342.17553 * 5 3 2 7 7 Si 1.86800 * 120.00358 * 162.18002 * 5 3 2 8 8 H 1.48503 * 109.47175 * 265.02737 * 7 5 3 9 9 H 1.48501 * 109.47040 * 25.02184 * 7 5 3 10 10 H 1.48500 * 109.47636 * 145.02389 * 7 5 3 11 11 C 1.46502 * 120.00065 * 180.02562 * 2 1 3 12 12 H 1.09004 * 110.64253 * 180.70001 * 11 2 1 13 13 C 1.55155 * 110.71833 * 57.56155 * 11 2 1 14 14 C 1.54915 * 101.58238 * 206.13703 * 13 11 2 15 15 N 1.47423 * 104.83110 * 37.00692 * 14 13 11 16 16 C 1.34775 * 125.64822 * 155.91299 * 15 14 13 17 17 O 1.21554 * 120.00164 * 185.66116 * 16 15 14 18 18 C 1.47842 * 120.00014 * 5.65853 * 16 15 14 19 19 C 1.39597 * 120.14400 * 48.84417 * 18 16 15 20 20 C 1.37931 * 119.85180 * 179.97438 * 19 18 16 21 21 C 1.38385 * 120.14779 * 0.02562 * 20 19 18 22 22 C 1.38331 * 120.29059 * 359.97438 * 21 20 19 23 23 C 1.37981 * 120.14605 * 359.74374 * 22 21 20 24 24 C 1.50696 * 120.07609 * 180.25758 * 23 22 21 25 25 F 1.39902 * 109.47274 * 0.27580 * 24 23 22 26 26 F 1.39893 * 109.47563 * 120.27446 * 24 23 22 27 27 F 1.39905 * 109.47092 * 240.27902 * 24 23 22 28 28 C 1.47324 * 108.73743 * 335.72071 * 15 14 13 29 29 H 1.09002 * 109.46738 * 85.77437 * 1 2 3 30 30 H 1.09001 * 109.47478 * 205.77476 * 1 2 3 31 31 H 1.08997 * 109.47363 * 325.77979 * 1 2 3 32 32 H 0.97005 * 120.00158 * 179.97438 * 6 5 3 33 33 H 1.09001 * 111.00814 * 324.20681 * 13 11 2 34 34 H 1.08998 * 111.00821 * 88.02129 * 13 11 2 35 35 H 1.08990 * 110.36814 * 155.84611 * 14 13 11 36 36 H 1.08999 * 110.36352 * 278.16971 * 14 13 11 37 37 H 1.08002 * 120.06972 * 359.97438 * 19 18 16 38 38 H 1.08005 * 119.92864 * 179.97438 * 20 19 18 39 39 H 1.08000 * 119.85337 * 179.97438 * 21 20 19 40 40 H 1.08004 * 119.92681 * 180.02562 * 22 21 20 41 41 H 1.09001 * 110.05986 * 241.87338 * 28 15 14 42 42 H 1.08994 * 109.84934 * 120.60982 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1797 1.2148 0.3236 5 6 1.5199 2.3509 -0.4157 6 7 0.4151 2.2837 -1.1279 7 14 2.2405 4.0143 0.0353 8 1 1.5848 4.5199 1.2681 9 1 3.6996 3.8737 0.2729 10 1 2.0099 4.9716 -1.0762 11 6 2.1975 -1.2687 -0.0006 12 1 3.2730 -1.0915 0.0120 13 6 1.7978 -2.1328 -1.2257 14 6 2.0901 -3.5627 -0.7065 15 7 1.7029 -3.5343 0.7157 16 6 1.3466 -4.6039 1.4543 17 8 0.9468 -4.4509 2.5919 18 6 1.4420 -5.9632 0.8807 19 6 2.6112 -6.3720 0.2370 20 6 2.6938 -7.6417 -0.2955 21 6 1.6207 -8.5094 -0.1931 22 6 0.4592 -8.1106 0.4436 23 6 0.3656 -6.8452 0.9857 24 6 -0.8984 -6.4144 1.6840 25 9 -1.8246 -7.4627 1.6608 26 9 -0.6073 -6.0788 3.0105 27 9 -1.4371 -5.3017 1.0289 28 6 1.7742 -2.1440 1.1979 29 1 -0.3633 0.0757 -1.0249 30 1 -0.3634 -0.9254 0.4469 31 1 -0.3634 0.8497 0.5779 32 1 -0.0253 3.0978 -1.4182 33 1 0.7405 -2.0113 -1.4614 34 1 2.4182 -1.8959 -2.0900 35 1 1.4898 -4.2932 -1.2486 36 1 3.1508 -3.7931 -0.8064 37 1 3.4492 -5.6955 0.1560 38 1 3.5977 -7.9591 -0.7942 39 1 1.6904 -9.5024 -0.6120 40 1 -0.3746 -8.7928 0.5205 41 1 2.5126 -2.0624 1.9956 42 1 0.7965 -1.8277 1.5610 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972785396.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:04 Heat of formation + Delta-G solvation = -116.773840 kcal Electronic energy + Delta-G solvation = -30900.140866 eV Core-core repulsion = 26238.589425 eV Total energy + Delta-G solvation = -4661.551441 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -50.09349 -47.68115 -47.42563 -40.52244 -38.89630 -37.37307 -34.86426 -32.39186 -32.21328 -31.22398 -29.79779 -27.98438 -26.31296 -26.04836 -24.61002 -23.11901 -22.26971 -22.22114 -19.97262 -19.22832 -18.47724 -18.36838 -18.24591 -17.28912 -17.06843 -16.12324 -15.96275 -15.55111 -15.08547 -14.76378 -14.68157 -14.42640 -14.19261 -13.98108 -13.92633 -13.63891 -13.62757 -13.47721 -13.31866 -13.16774 -13.01428 -12.63881 -12.56092 -12.35961 -12.05603 -11.75118 -11.62628 -11.36553 -11.02548 -10.80699 -10.62865 -10.48140 -10.27415 -9.99285 -9.88618 -9.81537 -9.65613 -9.41371 -8.58929 -8.42406 -6.87541 -5.79501 -3.22883 0.38892 0.69609 2.57286 2.60448 2.95165 3.22358 3.36717 3.44065 3.44733 3.64299 3.93407 4.27593 4.43391 4.43759 4.45356 4.53323 4.81014 4.91679 4.98496 5.06614 5.22836 5.25903 5.38318 5.48028 5.52161 5.68281 5.73491 5.74704 5.84407 5.88054 5.95557 6.24085 6.25689 6.34573 6.48346 6.58752 6.78552 6.83063 7.32636 7.59952 7.67121 7.76408 8.13929 8.31155 9.15356 9.79102 10.26881 11.25937 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.019813 B = 0.002999 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.858922 B = 9335.678998 C = 9989.591611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.158 3.842 2 N -0.585 5.585 3 C -0.263 4.263 4 H 0.072 0.928 5 C 0.005 3.995 6 N -0.901 5.901 7 Si 0.904 3.096 8 H -0.288 1.288 9 H -0.279 1.279 10 H -0.292 1.292 11 C 0.173 3.827 12 H 0.080 0.920 13 C -0.151 4.151 14 C 0.098 3.902 15 N -0.600 5.600 16 C 0.554 3.446 17 O -0.518 6.518 18 C -0.067 4.067 19 C -0.089 4.089 20 C -0.092 4.092 21 C -0.106 4.106 22 C -0.079 4.079 23 C -0.142 4.142 24 C 0.503 3.497 25 F -0.183 7.183 26 F -0.152 7.152 27 F -0.173 7.173 28 C 0.087 3.913 29 H 0.031 0.969 30 H 0.004 0.996 31 H 0.044 0.956 32 H 0.253 0.747 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.143 0.857 41 H 0.064 0.936 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.139 -23.555 -0.874 23.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.306 5.306 3 C -0.392 4.392 4 H 0.089 0.911 5 C -0.194 4.194 6 N -0.545 5.545 7 Si 0.734 3.266 8 H -0.215 1.215 9 H -0.204 1.204 10 H -0.218 1.218 11 C 0.063 3.937 12 H 0.098 0.902 13 C -0.191 4.191 14 C -0.025 4.025 15 N -0.333 5.333 16 C 0.340 3.660 17 O -0.395 6.395 18 C -0.071 4.071 19 C -0.108 4.108 20 C -0.110 4.110 21 C -0.124 4.124 22 C -0.097 4.097 23 C -0.144 4.144 24 C 0.448 3.552 25 F -0.164 7.164 26 F -0.133 7.133 27 F -0.154 7.154 28 C -0.037 4.037 29 H 0.049 0.951 30 H 0.022 0.978 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.159 0.841 38 H 0.156 0.844 39 H 0.156 0.844 40 H 0.161 0.839 41 H 0.083 0.917 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.743 -23.297 -0.258 23.459 hybrid contribution 0.054 0.962 0.184 0.981 sum 2.798 -22.335 -0.075 22.510 Atomic orbital electron populations 1.20796 0.82378 0.95998 0.99451 1.43901 1.01899 0.99890 1.84870 1.19234 0.97112 0.84686 1.38158 0.91056 1.24938 0.98033 0.98377 0.98040 1.70114 1.20495 1.26995 1.36944 0.86244 0.78598 0.83997 0.77728 1.21465 1.20386 1.21820 1.21294 0.96390 0.85995 0.90039 0.90176 1.23397 1.03101 0.92281 1.00316 1.22466 0.99453 0.99775 0.80848 1.48452 1.65398 1.07592 1.11889 1.17885 0.78946 0.83450 0.85718 1.90899 1.45251 1.85579 1.17760 1.19792 0.94516 0.94290 0.98474 1.21372 0.96740 0.96998 0.95682 1.21364 0.99035 0.93054 0.97538 1.21324 0.92506 1.00319 0.98289 1.21009 0.99183 0.93934 0.95538 1.20047 0.93716 0.96699 1.03937 1.18220 0.83543 0.74975 0.78417 1.93142 1.68793 1.57974 1.96507 1.93338 1.93036 1.92088 1.34873 1.93251 1.87404 1.53782 1.80995 1.22912 1.02677 0.78853 0.99261 0.95069 0.97782 0.93743 0.93659 0.90485 0.90153 0.91308 0.91451 0.84115 0.84361 0.84396 0.83888 0.91725 0.90516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.85 7.65 59.85 0.46 4.31 16 2 N -0.59 -14.09 2.94 -171.39 -0.50 -14.59 16 3 C -0.26 -6.97 9.61 -15.06 -0.14 -7.11 16 4 H 0.07 1.84 7.85 -52.48 -0.41 1.42 16 5 C 0.01 0.14 4.99 -17.43 -0.09 0.05 16 6 N -0.90 -25.75 10.84 55.49 0.60 -25.15 16 7 Si 0.90 21.46 29.59 -169.99 -5.03 16.43 16 8 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 C 0.17 3.32 3.43 -66.10 -0.23 3.09 16 12 H 0.08 1.48 7.92 -51.93 -0.41 1.07 16 13 C -0.15 -2.45 6.65 -24.58 -0.16 -2.61 16 14 C 0.10 1.27 5.52 -2.53 -0.01 1.26 16 15 N -0.60 -9.55 3.33 -171.39 -0.57 -10.12 16 16 C 0.55 9.14 6.28 -12.33 -0.08 9.06 16 17 O -0.52 -10.36 14.26 5.32 0.08 -10.28 16 18 C -0.07 -0.87 5.07 -104.97 -0.53 -1.40 16 19 C -0.09 -0.83 8.53 -39.19 -0.33 -1.17 16 20 C -0.09 -0.62 10.03 -39.64 -0.40 -1.01 16 21 C -0.11 -0.70 10.04 -39.49 -0.40 -1.09 16 22 C -0.08 -0.69 9.42 -39.64 -0.37 -1.06 16 23 C -0.14 -1.75 5.40 -104.23 -0.56 -2.31 16 24 C 0.50 7.25 2.82 36.00 0.10 7.36 16 25 F -0.18 -2.28 15.98 2.25 0.04 -2.24 16 26 F -0.15 -2.57 14.44 2.25 0.03 -2.53 16 27 F -0.17 -2.83 16.52 2.25 0.04 -2.79 16 28 C 0.09 1.58 6.43 -2.90 -0.02 1.56 16 29 H 0.03 0.81 7.45 -51.93 -0.39 0.43 16 30 H 0.00 0.08 6.33 -51.93 -0.33 -0.25 16 31 H 0.04 1.18 7.22 -51.93 -0.38 0.80 16 32 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.08 1.40 7.24 -51.93 -0.38 1.03 16 34 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.07 0.81 7.68 -51.93 -0.40 0.41 16 36 H 0.07 0.70 7.45 -51.93 -0.39 0.32 16 37 H 0.14 1.12 7.06 -52.49 -0.37 0.75 16 38 H 0.14 0.52 8.06 -52.48 -0.42 0.09 16 39 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 40 H 0.14 0.99 7.15 -52.48 -0.38 0.62 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.08 1.60 6.18 -51.93 -0.32 1.28 16 LS Contribution 351.34 15.07 5.29 5.29 Total: -1.00 -32.14 351.34 -7.76 -39.90 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -4.97 Total: -2.83 kcal Atomic # 6 Polarization: 11.68 SS G_CDS: -2.77 Total: 8.91 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: -0.47 Total: -49.86 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.08 Total: -10.28 kcal Atomic # 9 Polarization: -7.67 SS G_CDS: 0.11 Total: -7.57 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.14 -7.76 -39.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972785396.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.873 kcal (2) G-P(sol) polarization free energy of solvation -32.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds