Wall clock time and date at job start Wed Apr 1 2020 03:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36937 * 119.99923 * 2 1 4 4 H 1.08004 * 119.99799 * 159.76248 * 3 2 1 5 5 C 1.38805 * 120.00289 * 339.76557 * 3 2 1 6 6 N 1.31621 * 119.99999 * 342.17553 * 5 3 2 7 7 Si 1.86800 * 120.00358 * 162.18002 * 5 3 2 8 8 H 1.48503 * 109.47175 * 265.02737 * 7 5 3 9 9 H 1.48501 * 109.47040 * 25.02184 * 7 5 3 10 10 H 1.48500 * 109.47636 * 145.02389 * 7 5 3 11 11 C 1.46502 * 120.00065 * 180.02562 * 2 1 3 12 12 H 1.09004 * 110.64253 * 180.70001 * 11 2 1 13 13 C 1.55155 * 110.71833 * 57.56155 * 11 2 1 14 14 C 1.54915 * 101.58238 * 206.13703 * 13 11 2 15 15 N 1.47423 * 104.83110 * 37.00692 * 14 13 11 16 16 C 1.34775 * 125.64822 * 155.91299 * 15 14 13 17 17 O 1.21554 * 120.00164 * 185.66116 * 16 15 14 18 18 C 1.47842 * 120.00014 * 5.65853 * 16 15 14 19 19 C 1.39597 * 120.14400 * 48.84417 * 18 16 15 20 20 C 1.37931 * 119.85180 * 179.97438 * 19 18 16 21 21 C 1.38385 * 120.14779 * 0.02562 * 20 19 18 22 22 C 1.38331 * 120.29059 * 359.97438 * 21 20 19 23 23 C 1.37981 * 120.14605 * 359.74374 * 22 21 20 24 24 C 1.50696 * 120.07609 * 180.25758 * 23 22 21 25 25 F 1.39902 * 109.47274 * 0.27580 * 24 23 22 26 26 F 1.39893 * 109.47563 * 120.27446 * 24 23 22 27 27 F 1.39905 * 109.47092 * 240.27902 * 24 23 22 28 28 C 1.47324 * 108.73743 * 335.72071 * 15 14 13 29 29 H 1.09002 * 109.46738 * 85.77437 * 1 2 3 30 30 H 1.09001 * 109.47478 * 205.77476 * 1 2 3 31 31 H 1.08997 * 109.47363 * 325.77979 * 1 2 3 32 32 H 0.97005 * 120.00158 * 179.97438 * 6 5 3 33 33 H 1.09001 * 111.00814 * 324.20681 * 13 11 2 34 34 H 1.08998 * 111.00821 * 88.02129 * 13 11 2 35 35 H 1.08990 * 110.36814 * 155.84611 * 14 13 11 36 36 H 1.08999 * 110.36352 * 278.16971 * 14 13 11 37 37 H 1.08002 * 120.06972 * 359.97438 * 19 18 16 38 38 H 1.08005 * 119.92864 * 179.97438 * 20 19 18 39 39 H 1.08000 * 119.85337 * 179.97438 * 21 20 19 40 40 H 1.08004 * 119.92681 * 180.02562 * 22 21 20 41 41 H 1.09001 * 110.05986 * 241.87338 * 28 15 14 42 42 H 1.08994 * 109.84934 * 120.60982 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1797 1.2148 0.3236 5 6 1.5199 2.3509 -0.4157 6 7 0.4151 2.2837 -1.1279 7 14 2.2405 4.0143 0.0353 8 1 1.5848 4.5199 1.2681 9 1 3.6996 3.8737 0.2729 10 1 2.0099 4.9716 -1.0762 11 6 2.1975 -1.2687 -0.0006 12 1 3.2730 -1.0915 0.0120 13 6 1.7978 -2.1328 -1.2257 14 6 2.0901 -3.5627 -0.7065 15 7 1.7029 -3.5343 0.7157 16 6 1.3466 -4.6039 1.4543 17 8 0.9468 -4.4509 2.5919 18 6 1.4420 -5.9632 0.8807 19 6 2.6112 -6.3720 0.2370 20 6 2.6938 -7.6417 -0.2955 21 6 1.6207 -8.5094 -0.1931 22 6 0.4592 -8.1106 0.4436 23 6 0.3656 -6.8452 0.9857 24 6 -0.8984 -6.4144 1.6840 25 9 -1.8246 -7.4627 1.6608 26 9 -0.6073 -6.0788 3.0105 27 9 -1.4371 -5.3017 1.0289 28 6 1.7742 -2.1440 1.1979 29 1 -0.3633 0.0757 -1.0249 30 1 -0.3634 -0.9254 0.4469 31 1 -0.3634 0.8497 0.5779 32 1 -0.0253 3.0978 -1.4182 33 1 0.7405 -2.0113 -1.4614 34 1 2.4182 -1.8959 -2.0900 35 1 1.4898 -4.2932 -1.2486 36 1 3.1508 -3.7931 -0.8064 37 1 3.4492 -5.6955 0.1560 38 1 3.5977 -7.9591 -0.7942 39 1 1.6904 -9.5024 -0.6120 40 1 -0.3746 -8.7928 0.5205 41 1 2.5126 -2.0624 1.9956 42 1 0.7965 -1.8277 1.5610 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972785396.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:03 Heat of formation + Delta-G solvation = -135.853084 kcal Electronic energy + Delta-G solvation = -30900.968204 eV Core-core repulsion = 26238.589425 eV Total energy + Delta-G solvation = -4662.378779 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -51.21990 -48.78967 -48.62532 -41.58344 -39.90190 -38.75780 -36.60362 -33.65914 -33.11861 -32.45507 -31.22541 -29.42151 -28.10835 -27.26756 -25.80905 -24.48600 -23.54809 -23.09912 -21.15098 -20.73283 -19.54262 -19.49834 -19.25559 -18.95720 -18.37537 -17.58743 -17.06577 -16.59304 -16.26448 -15.95401 -15.76412 -15.60301 -15.41639 -15.19885 -15.14018 -15.08201 -14.92674 -14.83219 -14.56834 -14.49901 -14.15399 -13.84788 -13.81314 -13.68810 -13.25858 -13.00757 -12.91620 -12.72468 -12.57665 -12.41738 -12.28511 -12.27590 -12.06286 -11.82204 -11.52617 -11.12776 -10.64263 -10.32029 -10.13559 -9.72939 -8.87117 -7.86184 -5.31140 -0.36635 0.05926 1.46596 1.47745 1.50129 1.57427 1.58102 1.83410 2.45820 2.51218 2.64418 2.95844 3.23446 3.30962 3.33583 3.53726 3.74232 3.82121 3.96671 4.04166 4.24091 4.25311 4.26579 4.30432 4.41630 4.45331 4.61427 4.70573 4.78206 4.88535 4.96147 5.01782 5.12102 5.19572 5.21253 5.28932 5.30904 5.36503 5.59919 5.65811 5.71630 6.27797 6.38837 6.90845 7.10118 7.81434 8.26510 9.18554 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.019813 B = 0.002999 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.858922 B = 9335.678998 C = 9989.591611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.601 5.601 3 C -0.267 4.267 4 H 0.080 0.920 5 C -0.050 4.050 6 N -0.935 5.935 7 Si 0.967 3.033 8 H -0.293 1.293 9 H -0.263 1.263 10 H -0.295 1.295 11 C 0.168 3.832 12 H 0.092 0.908 13 C -0.143 4.143 14 C 0.108 3.892 15 N -0.602 5.602 16 C 0.550 3.450 17 O -0.567 6.567 18 C -0.097 4.097 19 C -0.087 4.087 20 C -0.076 4.076 21 C -0.088 4.088 22 C -0.080 4.080 23 C -0.162 4.162 24 C 0.493 3.507 25 F -0.174 7.174 26 F -0.174 7.174 27 F -0.192 7.192 28 C 0.098 3.902 29 H 0.009 0.991 30 H 0.017 0.983 31 H 0.013 0.987 32 H 0.248 0.752 33 H 0.051 0.949 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.156 0.844 38 H 0.181 0.819 39 H 0.180 0.820 40 H 0.159 0.841 41 H 0.064 0.936 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.011 -26.800 -2.546 27.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.323 5.323 3 C -0.396 4.396 4 H 0.098 0.902 5 C -0.246 4.246 6 N -0.581 5.581 7 Si 0.795 3.205 8 H -0.221 1.221 9 H -0.187 1.187 10 H -0.222 1.222 11 C 0.059 3.941 12 H 0.110 0.890 13 C -0.183 4.183 14 C -0.014 4.014 15 N -0.335 5.335 16 C 0.339 3.661 17 O -0.447 6.447 18 C -0.100 4.100 19 C -0.105 4.105 20 C -0.094 4.094 21 C -0.105 4.105 22 C -0.098 4.098 23 C -0.165 4.165 24 C 0.439 3.561 25 F -0.155 7.155 26 F -0.155 7.155 27 F -0.174 7.174 28 C -0.027 4.027 29 H 0.027 0.973 30 H 0.035 0.965 31 H 0.032 0.968 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.114 0.886 35 H 0.106 0.894 36 H 0.126 0.874 37 H 0.173 0.827 38 H 0.198 0.802 39 H 0.198 0.802 40 H 0.176 0.824 41 H 0.083 0.917 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.653 -26.590 -1.949 27.254 hybrid contribution -0.836 1.814 0.716 2.122 sum 4.817 -24.776 -1.232 25.270 Atomic orbital electron populations 1.20406 0.83283 0.95188 0.97524 1.44054 1.01690 1.01286 1.85225 1.19614 0.97444 0.85739 1.36849 0.90243 1.25694 0.98741 1.01596 0.98538 1.70260 1.22033 1.27284 1.38538 0.85252 0.78606 0.79891 0.76707 1.22077 1.18720 1.22225 1.21499 0.96462 0.84503 0.91613 0.88951 1.23236 1.01730 0.93906 0.99405 1.22607 1.02195 0.97760 0.78816 1.48503 1.65479 1.06411 1.13061 1.18576 0.77499 0.84899 0.85163 1.90861 1.47279 1.86552 1.20022 1.19574 0.96688 0.92230 1.01487 1.21622 0.95456 0.98617 0.94820 1.21860 1.00382 0.91405 0.95721 1.21859 0.90916 1.01863 0.95903 1.21314 1.00917 0.92475 0.95049 1.20027 0.92414 0.98369 1.05656 1.18693 0.84964 0.74649 0.77764 1.93142 1.68745 1.57228 1.96422 1.93285 1.93246 1.92362 1.36619 1.93201 1.87885 1.55079 1.81217 1.22531 1.00624 0.80658 0.98879 0.97257 0.96483 0.96792 0.94278 0.93060 0.88644 0.89394 0.87370 0.82669 0.80166 0.80242 0.82391 0.91730 0.94013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.29 7.65 127.77 0.98 10.27 16 2 N -0.60 -29.61 2.94 -696.15 -2.04 -31.65 16 3 C -0.27 -14.28 9.61 84.03 0.81 -13.47 16 4 H 0.08 4.04 7.85 -2.91 -0.02 4.02 16 5 C -0.05 -2.78 4.99 84.86 0.42 -2.36 16 6 N -0.93 -55.16 10.84 21.65 0.23 -54.92 16 7 Si 0.97 44.71 29.59 68.60 2.03 46.74 16 8 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 9 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 10 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 11 C 0.17 6.38 3.43 46.18 0.16 6.53 16 12 H 0.09 3.28 7.92 -2.38 -0.02 3.27 16 13 C -0.14 -4.48 6.65 31.99 0.21 -4.26 16 14 C 0.11 2.52 5.52 86.86 0.48 3.00 16 15 N -0.60 -18.87 3.33 -814.44 -2.71 -21.58 16 16 C 0.55 18.26 6.28 86.79 0.54 18.81 16 17 O -0.57 -23.81 14.26 -3.88 -0.06 -23.86 16 18 C -0.10 -2.34 5.07 -20.09 -0.10 -2.44 16 19 C -0.09 -1.26 8.53 22.53 0.19 -1.07 16 20 C -0.08 -0.56 10.03 22.23 0.22 -0.33 16 21 C -0.09 -0.64 10.04 22.33 0.22 -0.42 16 22 C -0.08 -1.14 9.42 22.23 0.21 -0.93 16 23 C -0.16 -3.83 5.40 -19.61 -0.11 -3.93 16 24 C 0.49 14.65 2.82 71.23 0.20 14.85 16 25 F -0.17 -4.36 15.98 44.97 0.72 -3.64 16 26 F -0.17 -6.22 14.44 44.97 0.65 -5.57 16 27 F -0.19 -6.62 16.52 44.97 0.74 -5.88 16 28 C 0.10 3.65 6.43 86.67 0.56 4.21 16 29 H 0.01 0.51 7.45 -2.39 -0.02 0.49 16 30 H 0.02 0.80 6.33 -2.39 -0.02 0.79 16 31 H 0.01 0.76 7.22 -2.39 -0.02 0.74 16 32 H 0.25 14.27 8.31 -92.70 -0.77 13.50 16 33 H 0.05 1.88 7.24 -2.39 -0.02 1.86 16 34 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 35 H 0.09 1.80 7.68 -2.39 -0.02 1.78 16 36 H 0.11 1.73 7.45 -2.39 -0.02 1.71 16 37 H 0.16 1.73 7.06 -2.91 -0.02 1.71 16 38 H 0.18 -0.09 8.06 -2.91 -0.02 -0.11 16 39 H 0.18 -0.09 8.06 -2.91 -0.02 -0.11 16 40 H 0.16 1.70 7.15 -2.91 -0.02 1.67 16 41 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 42 H 0.04 1.84 6.18 -2.39 -0.01 1.82 16 Total: -1.00 -76.08 351.34 5.63 -70.45 By element: Atomic # 1 Polarization: 0.41 SS G_CDS: 1.06 Total: 1.47 kcal Atomic # 6 Polarization: 23.45 SS G_CDS: 5.00 Total: 28.45 kcal Atomic # 7 Polarization: -103.64 SS G_CDS: -4.52 Total: -108.16 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.06 Total: -23.86 kcal Atomic # 9 Polarization: -17.20 SS G_CDS: 2.11 Total: -15.09 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -76.08 5.63 -70.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972785396.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.405 kcal (2) G-P(sol) polarization free energy of solvation -76.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds