Wall clock time and date at job start Wed Apr 1 2020 03:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36940 * 119.99785 * 2 1 4 4 H 1.07997 * 119.99744 * 158.02214 * 3 2 1 5 5 C 1.38813 * 120.00181 * 338.03097 * 3 2 1 6 6 N 1.31618 * 119.99782 * 347.99136 * 5 3 2 7 7 Si 1.86798 * 120.00170 * 167.99913 * 5 3 2 8 8 H 1.48494 * 109.47403 * 59.99103 * 7 5 3 9 9 H 1.48499 * 109.47131 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46697 * 299.99491 * 7 5 3 11 11 C 1.46490 * 120.00004 * 180.02562 * 2 1 3 12 12 H 1.09007 * 110.64179 * 181.68612 * 11 2 1 13 13 C 1.55158 * 110.72462 * 305.02272 * 11 2 1 14 14 C 1.54899 * 101.58474 * 153.86375 * 13 11 2 15 15 N 1.47424 * 104.83699 * 322.99466 * 14 13 11 16 16 C 1.34772 * 125.65194 * 204.09616 * 15 14 13 17 17 O 1.21556 * 120.00349 * 174.86146 * 16 15 14 18 18 C 1.47845 * 120.00102 * 354.85172 * 16 15 14 19 19 C 1.39600 * 120.14481 * 310.89866 * 18 16 15 20 20 C 1.37933 * 119.85300 * 179.74114 * 19 18 16 21 21 C 1.38381 * 120.14545 * 0.53074 * 20 19 18 22 22 C 1.38340 * 120.29418 * 359.74391 * 21 20 19 23 23 C 1.37984 * 120.13848 * 359.97438 * 22 21 20 24 24 C 1.50709 * 120.06871 * 180.02562 * 23 22 21 25 25 F 1.39902 * 109.46945 * 359.97438 * 24 23 22 26 26 F 1.39898 * 109.46946 * 119.97632 * 24 23 22 27 27 F 1.39903 * 109.46769 * 239.97763 * 24 23 22 28 28 C 1.47019 * 108.69976 * 24.12528 * 15 14 13 29 29 H 1.08997 * 109.47637 * 86.03151 * 1 2 3 30 30 H 1.09002 * 109.46944 * 206.03351 * 1 2 3 31 31 H 1.08998 * 109.47317 * 326.03219 * 1 2 3 32 32 H 0.97004 * 120.00257 * 180.02562 * 6 5 3 33 33 H 1.09001 * 111.00245 * 271.94225 * 13 11 2 34 34 H 1.09005 * 110.99794 * 35.79035 * 13 11 2 35 35 H 1.09000 * 110.37167 * 204.15096 * 14 13 11 36 36 H 1.09007 * 110.45900 * 81.87795 * 14 13 11 37 37 H 1.07995 * 120.07385 * 359.97438 * 19 18 16 38 38 H 1.07999 * 119.92904 * 180.29671 * 20 19 18 39 39 H 1.08000 * 119.85552 * 179.76326 * 21 20 19 40 40 H 1.07994 * 119.93255 * 179.97438 * 22 21 20 41 41 H 1.09001 * 109.88594 * 239.52863 * 28 15 14 42 42 H 1.09000 * 109.88563 * 118.36552 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1708 1.2199 0.3500 5 6 1.5312 2.3445 -0.4497 6 7 0.3843 2.2716 -1.0914 7 14 2.3266 4.0068 -0.1444 8 1 3.6644 4.0412 -0.7880 9 1 1.4732 5.0771 -0.7199 10 1 2.4749 4.2235 1.3172 11 6 2.1975 -1.2686 -0.0006 12 1 3.2726 -1.0916 0.0295 13 6 1.7507 -2.1611 1.1874 14 6 2.0638 -3.5785 0.6467 15 7 1.7324 -3.5166 -0.7885 16 6 1.4056 -4.5684 -1.5653 17 8 1.0596 -4.3894 -2.7167 18 6 1.4681 -5.9400 -1.0170 19 6 2.6066 -6.3706 -0.3336 20 6 2.6564 -7.6498 0.1801 21 6 1.5852 -8.5092 0.0097 22 6 0.4562 -8.0907 -0.6715 23 6 0.3914 -6.8117 -1.1853 24 6 -0.8395 -6.3573 -1.9266 25 9 -1.7723 -7.3993 -1.9646 26 9 -1.3982 -5.2549 -1.2710 27 9 -0.4906 -5.9959 -3.2323 28 6 1.8182 -2.1176 -1.2322 29 1 -0.3634 0.0711 -1.0251 30 1 -0.3633 -0.9234 0.4511 31 1 -0.3634 0.8523 0.5742 32 1 -0.0477 3.0811 -1.4060 33 1 2.3373 -1.9452 2.0804 34 1 0.6850 -2.0446 1.3843 35 1 1.4431 -4.3214 1.1476 36 1 3.1195 -3.8135 0.7824 37 1 3.4451 -5.7025 -0.2041 38 1 3.5347 -7.9826 0.7132 39 1 1.6307 -9.5110 0.4105 40 1 -0.3761 -8.7664 -0.8014 41 1 0.8541 -1.7930 -1.6235 42 1 2.5847 -2.0188 -2.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972785397.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:08 Heat of formation + Delta-G solvation = -116.030536 kcal Electronic energy + Delta-G solvation = -30937.397131 eV Core-core repulsion = 26275.877923 eV Total energy + Delta-G solvation = -4661.519208 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -50.06708 -47.65786 -47.39584 -40.49733 -38.87862 -37.35124 -34.85258 -32.37543 -32.20014 -31.22907 -29.74336 -27.97867 -26.29145 -26.03706 -24.58830 -23.07548 -22.32177 -22.19115 -19.92993 -19.21883 -18.45324 -18.33981 -18.21969 -17.25623 -17.07628 -16.07687 -15.91434 -15.53598 -15.08394 -14.77262 -14.71052 -14.40566 -14.17577 -13.95919 -13.93282 -13.61103 -13.56674 -13.45859 -13.26085 -13.15434 -12.99665 -12.60678 -12.56963 -12.17869 -12.07301 -11.83005 -11.63979 -11.45870 -10.92298 -10.82102 -10.59081 -10.44688 -10.32608 -9.97978 -9.84986 -9.79269 -9.64257 -9.39573 -8.58439 -8.37930 -6.84549 -5.77049 -3.24638 0.40714 0.70839 2.59709 2.63985 2.98963 3.24999 3.36834 3.42323 3.43216 3.66690 3.95658 4.29786 4.44744 4.45514 4.46047 4.54382 4.82178 4.92437 4.96947 5.07997 5.23489 5.24323 5.39126 5.47200 5.55467 5.70277 5.74930 5.77832 5.85080 5.89175 5.95731 6.26273 6.30089 6.33907 6.47135 6.62149 6.82422 6.84249 7.35795 7.66441 7.70709 7.77813 8.19310 8.33582 9.17215 9.79446 10.28013 11.27389 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.019616 B = 0.003065 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.064456 B = 9132.583491 C = 9931.962677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.585 5.585 3 C -0.264 4.264 4 H 0.071 0.929 5 C 0.005 3.995 6 N -0.904 5.904 7 Si 0.908 3.092 8 H -0.282 1.282 9 H -0.290 1.290 10 H -0.284 1.284 11 C 0.174 3.826 12 H 0.080 0.920 13 C -0.153 4.153 14 C 0.100 3.900 15 N -0.600 5.600 16 C 0.552 3.448 17 O -0.516 6.516 18 C -0.067 4.067 19 C -0.090 4.090 20 C -0.092 4.092 21 C -0.107 4.107 22 C -0.079 4.079 23 C -0.142 4.142 24 C 0.503 3.497 25 F -0.183 7.183 26 F -0.173 7.173 27 F -0.152 7.152 28 C 0.086 3.914 29 H 0.030 0.970 30 H 0.001 0.999 31 H 0.047 0.953 32 H 0.255 0.745 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.141 0.859 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.143 0.857 41 H 0.076 0.924 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.953 -23.383 5.478 24.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.305 5.305 3 C -0.393 4.393 4 H 0.088 0.912 5 C -0.194 4.194 6 N -0.548 5.548 7 Si 0.738 3.262 8 H -0.209 1.209 9 H -0.216 1.216 10 H -0.210 1.210 11 C 0.063 3.937 12 H 0.098 0.902 13 C -0.193 4.193 14 C -0.024 4.024 15 N -0.333 5.333 16 C 0.338 3.662 17 O -0.393 6.393 18 C -0.070 4.070 19 C -0.109 4.109 20 C -0.110 4.110 21 C -0.125 4.125 22 C -0.097 4.097 23 C -0.144 4.144 24 C 0.448 3.552 25 F -0.164 7.164 26 F -0.154 7.154 27 F -0.133 7.133 28 C -0.038 4.038 29 H 0.048 0.952 30 H 0.020 0.980 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.159 0.841 38 H 0.156 0.844 39 H 0.156 0.844 40 H 0.161 0.839 41 H 0.094 0.906 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.575 -23.097 4.702 23.711 hybrid contribution 0.129 0.950 -0.068 0.961 sum 2.704 -22.148 4.634 22.788 Atomic orbital electron populations 1.20816 0.82278 0.95831 0.99466 1.43929 1.01969 0.99838 1.84787 1.19188 0.97986 0.85064 1.37091 0.91152 1.25059 0.97639 0.98651 0.98016 1.70073 1.17868 1.27385 1.39454 0.86287 0.78495 0.83527 0.77899 1.20873 1.21611 1.21000 1.21357 0.96414 0.85962 0.89967 0.90227 1.23363 1.03049 0.92878 1.00042 1.22419 0.99833 0.99445 0.80667 1.48441 1.66545 1.07791 1.10564 1.17906 0.78876 0.83579 0.85830 1.90909 1.46226 1.85149 1.16999 1.19821 0.94582 0.94337 0.98256 1.21368 0.97003 0.96859 0.95629 1.21357 0.98812 0.93088 0.97748 1.21319 0.92759 1.00349 0.98084 1.21009 0.99260 0.93740 0.95646 1.20054 0.94209 0.96521 1.03628 1.18226 0.83024 0.75115 0.78814 1.93141 1.68336 1.58412 1.96548 1.93249 1.86615 1.54599 1.80956 1.93346 1.91608 1.91475 1.36868 1.23030 1.02704 0.78066 0.99995 0.95206 0.98039 0.93388 0.93507 0.90224 0.90280 0.91335 0.91466 0.84139 0.84390 0.84423 0.83901 0.90557 0.91911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.92 7.75 59.85 0.46 4.38 16 2 N -0.59 -14.12 2.93 -171.39 -0.50 -14.63 16 3 C -0.26 -7.00 9.63 -15.06 -0.14 -7.15 16 4 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 5 C 0.01 0.15 5.11 -17.43 -0.09 0.06 16 6 N -0.90 -26.13 10.60 55.49 0.59 -25.54 16 7 Si 0.91 21.44 29.57 -169.99 -5.03 16.42 16 8 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 9 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 C 0.17 3.34 3.45 -66.10 -0.23 3.11 16 12 H 0.08 1.48 7.92 -51.92 -0.41 1.07 16 13 C -0.15 -2.35 6.60 -24.59 -0.16 -2.51 16 14 C 0.10 1.27 5.52 -2.53 -0.01 1.26 16 15 N -0.60 -9.82 3.33 -171.64 -0.57 -10.39 16 16 C 0.55 9.40 6.27 -12.33 -0.08 9.32 16 17 O -0.52 -10.76 14.28 5.32 0.08 -10.68 16 18 C -0.07 -0.88 5.06 -104.97 -0.53 -1.41 16 19 C -0.09 -0.85 8.52 -39.19 -0.33 -1.18 16 20 C -0.09 -0.62 10.03 -39.64 -0.40 -1.02 16 21 C -0.11 -0.71 10.04 -39.49 -0.40 -1.10 16 22 C -0.08 -0.70 9.42 -39.64 -0.37 -1.07 16 23 C -0.14 -1.78 5.40 -104.22 -0.56 -2.35 16 24 C 0.50 7.42 2.82 36.01 0.10 7.52 16 25 F -0.18 -2.33 15.98 2.25 0.04 -2.29 16 26 F -0.17 -2.88 16.53 2.25 0.04 -2.84 16 27 F -0.15 -2.64 14.45 2.25 0.03 -2.61 16 28 C 0.09 1.67 6.51 -3.06 -0.02 1.65 16 29 H 0.03 0.80 7.33 -51.93 -0.38 0.42 16 30 H 0.00 0.03 6.11 -51.93 -0.32 -0.29 16 31 H 0.05 1.26 7.16 -51.93 -0.37 0.89 16 32 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.08 1.33 6.13 -51.93 -0.32 1.01 16 35 H 0.07 0.78 7.66 -51.93 -0.40 0.39 16 36 H 0.07 0.69 7.46 -51.93 -0.39 0.30 16 37 H 0.14 1.14 7.07 -52.49 -0.37 0.77 16 38 H 0.14 0.52 8.06 -52.49 -0.42 0.09 16 39 H 0.14 0.49 8.06 -52.49 -0.42 0.06 16 40 H 0.14 1.01 7.15 -52.49 -0.38 0.64 16 41 H 0.08 1.73 7.03 -51.93 -0.37 1.37 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 350.68 15.07 5.28 5.28 Total: -1.00 -32.54 350.68 -7.74 -40.28 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: -4.93 Total: -2.51 kcal Atomic # 6 Polarization: 12.27 SS G_CDS: -2.77 Total: 9.50 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: -0.49 Total: -50.56 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.08 Total: -10.68 kcal Atomic # 9 Polarization: -7.85 SS G_CDS: 0.11 Total: -7.74 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.54 -7.74 -40.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972785397.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.746 kcal (2) G-P(sol) polarization free energy of solvation -32.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds