Wall clock time and date at job start Wed Apr 1 2020 03:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36940 * 119.99785 * 2 1 4 4 H 1.07997 * 119.99744 * 158.02214 * 3 2 1 5 5 C 1.38813 * 120.00181 * 338.03097 * 3 2 1 6 6 N 1.31618 * 119.99782 * 347.99136 * 5 3 2 7 7 Si 1.86798 * 120.00170 * 167.99913 * 5 3 2 8 8 H 1.48494 * 109.47403 * 59.99103 * 7 5 3 9 9 H 1.48499 * 109.47131 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46697 * 299.99491 * 7 5 3 11 11 C 1.46490 * 120.00004 * 180.02562 * 2 1 3 12 12 H 1.09007 * 110.64179 * 181.68612 * 11 2 1 13 13 C 1.55158 * 110.72462 * 305.02272 * 11 2 1 14 14 C 1.54899 * 101.58474 * 153.86375 * 13 11 2 15 15 N 1.47424 * 104.83699 * 322.99466 * 14 13 11 16 16 C 1.34772 * 125.65194 * 204.09616 * 15 14 13 17 17 O 1.21556 * 120.00349 * 174.86146 * 16 15 14 18 18 C 1.47845 * 120.00102 * 354.85172 * 16 15 14 19 19 C 1.39600 * 120.14481 * 310.89866 * 18 16 15 20 20 C 1.37933 * 119.85300 * 179.74114 * 19 18 16 21 21 C 1.38381 * 120.14545 * 0.53074 * 20 19 18 22 22 C 1.38340 * 120.29418 * 359.74391 * 21 20 19 23 23 C 1.37984 * 120.13848 * 359.97438 * 22 21 20 24 24 C 1.50709 * 120.06871 * 180.02562 * 23 22 21 25 25 F 1.39902 * 109.46945 * 359.97438 * 24 23 22 26 26 F 1.39898 * 109.46946 * 119.97632 * 24 23 22 27 27 F 1.39903 * 109.46769 * 239.97763 * 24 23 22 28 28 C 1.47019 * 108.69976 * 24.12528 * 15 14 13 29 29 H 1.08997 * 109.47637 * 86.03151 * 1 2 3 30 30 H 1.09002 * 109.46944 * 206.03351 * 1 2 3 31 31 H 1.08998 * 109.47317 * 326.03219 * 1 2 3 32 32 H 0.97004 * 120.00257 * 180.02562 * 6 5 3 33 33 H 1.09001 * 111.00245 * 271.94225 * 13 11 2 34 34 H 1.09005 * 110.99794 * 35.79035 * 13 11 2 35 35 H 1.09000 * 110.37167 * 204.15096 * 14 13 11 36 36 H 1.09007 * 110.45900 * 81.87795 * 14 13 11 37 37 H 1.07995 * 120.07385 * 359.97438 * 19 18 16 38 38 H 1.07999 * 119.92904 * 180.29671 * 20 19 18 39 39 H 1.08000 * 119.85552 * 179.76326 * 21 20 19 40 40 H 1.07994 * 119.93255 * 179.97438 * 22 21 20 41 41 H 1.09001 * 109.88594 * 239.52863 * 28 15 14 42 42 H 1.09000 * 109.88563 * 118.36552 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1708 1.2199 0.3500 5 6 1.5312 2.3445 -0.4497 6 7 0.3843 2.2716 -1.0914 7 14 2.3266 4.0068 -0.1444 8 1 3.6644 4.0412 -0.7880 9 1 1.4732 5.0771 -0.7199 10 1 2.4749 4.2235 1.3172 11 6 2.1975 -1.2686 -0.0006 12 1 3.2726 -1.0916 0.0295 13 6 1.7507 -2.1611 1.1874 14 6 2.0638 -3.5785 0.6467 15 7 1.7324 -3.5166 -0.7885 16 6 1.4056 -4.5684 -1.5653 17 8 1.0596 -4.3894 -2.7167 18 6 1.4681 -5.9400 -1.0170 19 6 2.6066 -6.3706 -0.3336 20 6 2.6564 -7.6498 0.1801 21 6 1.5852 -8.5092 0.0097 22 6 0.4562 -8.0907 -0.6715 23 6 0.3914 -6.8117 -1.1853 24 6 -0.8395 -6.3573 -1.9266 25 9 -1.7723 -7.3993 -1.9646 26 9 -1.3982 -5.2549 -1.2710 27 9 -0.4906 -5.9959 -3.2323 28 6 1.8182 -2.1176 -1.2322 29 1 -0.3634 0.0711 -1.0251 30 1 -0.3633 -0.9234 0.4511 31 1 -0.3634 0.8523 0.5742 32 1 -0.0477 3.0811 -1.4060 33 1 2.3373 -1.9452 2.0804 34 1 0.6850 -2.0446 1.3843 35 1 1.4431 -4.3214 1.1476 36 1 3.1195 -3.8135 0.7824 37 1 3.4451 -5.7025 -0.2041 38 1 3.5347 -7.9826 0.7132 39 1 1.6307 -9.5110 0.4105 40 1 -0.3761 -8.7664 -0.8014 41 1 0.8541 -1.7930 -1.6235 42 1 2.5847 -2.0188 -2.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972785397.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:07 Heat of formation + Delta-G solvation = -135.995488 kcal Electronic energy + Delta-G solvation = -30938.262877 eV Core-core repulsion = 26275.877923 eV Total energy + Delta-G solvation = -4662.384954 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -51.22630 -48.79665 -48.63498 -41.58747 -39.90317 -38.76375 -36.60627 -33.66936 -33.11944 -32.45917 -31.17514 -29.44527 -28.10094 -27.27130 -25.79681 -24.48037 -23.56849 -23.09344 -21.12375 -20.74824 -19.54961 -19.50402 -19.25316 -18.97080 -18.36358 -17.53489 -17.06297 -16.68817 -16.27051 -15.94847 -15.77352 -15.60954 -15.39532 -15.20327 -15.14041 -15.06527 -14.91895 -14.84150 -14.56568 -14.49659 -14.07657 -13.85861 -13.75439 -13.69400 -13.34257 -13.15827 -12.75589 -12.69644 -12.55352 -12.41773 -12.29305 -12.24257 -12.12624 -11.82314 -11.46507 -11.12720 -10.63463 -10.32022 -10.13452 -9.73266 -8.85215 -7.84227 -5.34385 -0.36540 0.05960 1.47243 1.48219 1.50633 1.56947 1.57546 1.84602 2.45834 2.51269 2.64170 2.95527 3.25217 3.31988 3.32785 3.54887 3.74526 3.82232 3.98265 4.04351 4.24278 4.25844 4.26882 4.31611 4.43038 4.45490 4.62283 4.73994 4.79967 4.85745 4.99972 5.03008 5.17263 5.17991 5.20152 5.28257 5.30778 5.40954 5.62576 5.67528 5.71994 6.29245 6.40360 6.91915 7.10997 7.81812 8.27193 9.19338 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.019616 B = 0.003065 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.064456 B = 9132.583491 C = 9931.962677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.601 5.601 3 C -0.267 4.267 4 H 0.084 0.916 5 C -0.056 4.056 6 N -0.943 5.943 7 Si 0.975 3.025 8 H -0.274 1.274 9 H -0.300 1.300 10 H -0.273 1.273 11 C 0.168 3.832 12 H 0.092 0.908 13 C -0.141 4.141 14 C 0.105 3.895 15 N -0.601 5.601 16 C 0.546 3.454 17 O -0.571 6.571 18 C -0.095 4.095 19 C -0.086 4.086 20 C -0.075 4.075 21 C -0.087 4.087 22 C -0.079 4.079 23 C -0.163 4.163 24 C 0.492 3.508 25 F -0.174 7.174 26 F -0.193 7.193 27 F -0.176 7.176 28 C 0.097 3.903 29 H -0.010 1.010 30 H 0.026 0.974 31 H 0.023 0.977 32 H 0.247 0.753 33 H 0.108 0.892 34 H 0.060 0.940 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.156 0.844 38 H 0.182 0.818 39 H 0.181 0.819 40 H 0.159 0.841 41 H 0.029 0.971 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.916 -26.821 8.726 28.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.322 5.322 3 C -0.397 4.397 4 H 0.102 0.898 5 C -0.251 4.251 6 N -0.589 5.589 7 Si 0.803 3.197 8 H -0.199 1.199 9 H -0.227 1.227 10 H -0.199 1.199 11 C 0.059 3.941 12 H 0.110 0.890 13 C -0.180 4.180 14 C -0.016 4.016 15 N -0.334 5.334 16 C 0.335 3.665 17 O -0.451 6.451 18 C -0.099 4.099 19 C -0.105 4.105 20 C -0.092 4.092 21 C -0.105 4.105 22 C -0.097 4.097 23 C -0.165 4.165 24 C 0.438 3.562 25 F -0.155 7.155 26 F -0.174 7.174 27 F -0.157 7.157 28 C -0.028 4.028 29 H 0.009 0.991 30 H 0.044 0.956 31 H 0.042 0.958 32 H 0.056 0.944 33 H 0.126 0.874 34 H 0.079 0.921 35 H 0.109 0.891 36 H 0.127 0.873 37 H 0.173 0.827 38 H 0.200 0.800 39 H 0.198 0.802 40 H 0.176 0.824 41 H 0.048 0.952 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.578 -26.589 8.002 28.322 hybrid contribution -0.780 1.839 -1.072 2.268 sum 4.797 -24.750 6.930 26.146 Atomic orbital electron populations 1.20421 0.83198 0.95824 0.96818 1.44118 1.01780 1.01238 1.85059 1.19658 0.98430 0.85985 1.35612 0.89798 1.25904 0.98384 1.02308 0.98470 1.70281 1.19670 1.27580 1.41395 0.85226 0.77510 0.78920 0.78065 1.19928 1.22707 1.19861 1.21599 0.96614 0.84488 0.91408 0.88959 1.23241 1.02260 0.93318 0.99214 1.22666 1.02750 0.98186 0.78029 1.48481 1.66495 1.06213 1.12182 1.18674 0.77323 0.85252 0.85207 1.90867 1.48476 1.86257 1.19523 1.19560 0.96908 0.91966 1.01435 1.21618 0.95683 0.98529 0.94645 1.21863 1.00007 0.91356 0.95998 1.21867 0.91071 1.01982 0.95566 1.21317 1.00974 0.92153 0.95244 1.20024 0.92977 0.98227 1.05242 1.18731 0.84438 0.74813 0.78191 1.93141 1.68259 1.57615 1.96476 1.93196 1.87117 1.55918 1.81168 1.93289 1.91861 1.91800 1.38737 1.22578 0.99702 0.80670 0.99855 0.99129 0.95578 0.95830 0.94381 0.87358 0.92123 0.89087 0.87337 0.82657 0.80040 0.80155 0.82382 0.95219 0.93125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.41 7.75 127.77 0.99 10.40 16 2 N -0.60 -29.70 2.93 -696.16 -2.04 -31.75 16 3 C -0.27 -14.31 9.63 84.03 0.81 -13.50 16 4 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 5 C -0.06 -3.13 5.11 84.86 0.43 -2.69 16 6 N -0.94 -57.25 10.60 21.65 0.23 -57.02 16 7 Si 0.97 44.81 29.57 68.60 2.03 46.84 16 8 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 9 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 11 C 0.17 6.40 3.45 46.18 0.16 6.55 16 12 H 0.09 3.29 7.92 -2.38 -0.02 3.27 16 13 C -0.14 -4.00 6.60 31.98 0.21 -3.79 16 14 C 0.10 2.36 5.52 86.85 0.48 2.84 16 15 N -0.60 -19.63 3.33 -815.21 -2.71 -22.34 16 16 C 0.55 19.05 6.27 86.79 0.54 19.59 16 17 O -0.57 -25.50 14.28 -3.89 -0.06 -25.56 16 18 C -0.10 -2.38 5.06 -20.09 -0.10 -2.48 16 19 C -0.09 -1.26 8.52 22.53 0.19 -1.07 16 20 C -0.07 -0.53 10.03 22.23 0.22 -0.31 16 21 C -0.09 -0.63 10.04 22.33 0.22 -0.40 16 22 C -0.08 -1.14 9.42 22.23 0.21 -0.93 16 23 C -0.16 -3.92 5.40 -19.61 -0.11 -4.02 16 24 C 0.49 15.11 2.82 71.24 0.20 15.31 16 25 F -0.17 -4.47 15.98 44.97 0.72 -3.75 16 26 F -0.19 -6.82 16.53 44.97 0.74 -6.08 16 27 F -0.18 -6.57 14.45 44.97 0.65 -5.92 16 28 C 0.10 3.95 6.51 86.73 0.56 4.51 16 29 H -0.01 -0.57 7.33 -2.39 -0.02 -0.59 16 30 H 0.03 1.18 6.11 -2.39 -0.01 1.17 16 31 H 0.02 1.29 7.16 -2.39 -0.02 1.27 16 32 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 33 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.06 1.97 6.13 -2.38 -0.01 1.95 16 35 H 0.09 1.72 7.66 -2.39 -0.02 1.71 16 36 H 0.11 1.63 7.46 -2.38 -0.02 1.61 16 37 H 0.16 1.74 7.07 -2.91 -0.02 1.72 16 38 H 0.18 -0.17 8.06 -2.91 -0.02 -0.19 16 39 H 0.18 -0.14 8.06 -2.91 -0.02 -0.16 16 40 H 0.16 1.72 7.15 -2.91 -0.02 1.70 16 41 H 0.03 1.46 7.03 -2.39 -0.02 1.45 16 42 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -79.74 350.68 5.66 -74.08 By element: Atomic # 1 Polarization: 0.43 SS G_CDS: 1.06 Total: 1.49 kcal Atomic # 6 Polarization: 24.97 SS G_CDS: 5.04 Total: 30.01 kcal Atomic # 7 Polarization: -106.59 SS G_CDS: -4.52 Total: -111.11 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -0.06 Total: -25.56 kcal Atomic # 9 Polarization: -17.87 SS G_CDS: 2.11 Total: -15.76 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -79.74 5.66 -74.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972785397.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.915 kcal (2) G-P(sol) polarization free energy of solvation -79.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds