Wall clock time and date at job start Wed Apr 1 2020 03:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36932 * 119.99894 * 2 1 4 4 H 1.07997 * 120.00142 * 204.23461 * 3 2 1 5 5 C 1.38810 * 120.00410 * 24.24284 * 3 2 1 6 6 N 1.31627 * 119.99838 * 9.06971 * 5 3 2 7 7 Si 1.86793 * 120.00361 * 189.07446 * 5 3 2 8 8 H 1.48501 * 109.47242 * 89.99813 * 7 5 3 9 9 H 1.48502 * 109.47616 * 209.99690 * 7 5 3 10 10 H 1.48503 * 109.47205 * 329.99775 * 7 5 3 11 11 C 1.46496 * 119.99701 * 180.02562 * 2 1 3 12 12 H 1.08997 * 110.88526 * 182.42669 * 11 2 1 13 13 C 1.55161 * 111.03601 * 306.32696 * 11 2 1 14 14 C 1.54334 * 103.01943 * 153.40138 * 13 11 2 15 15 N 1.47017 * 107.26601 * 338.13496 * 14 13 11 16 16 C 1.34775 * 125.64955 * 178.85181 * 15 14 13 17 17 O 1.21550 * 120.00114 * 185.22934 * 16 15 14 18 18 C 1.47853 * 119.99893 * 5.22297 * 16 15 14 19 19 C 1.39570 * 120.14559 * 172.86841 * 18 16 15 20 20 C 1.37952 * 119.85574 * 179.97438 * 19 18 16 21 21 C 1.38361 * 120.14322 * 0.02562 * 20 19 18 22 22 C 1.50703 * 119.85524 * 179.97438 * 21 20 19 23 23 F 1.39901 * 109.47351 * 89.99423 * 22 21 20 24 24 F 1.39893 * 109.47072 * 209.99606 * 22 21 20 25 25 F 1.39900 * 109.46850 * 329.99439 * 22 21 20 26 26 C 1.38356 * 120.29441 * 0.24708 * 21 20 19 27 27 C 1.37959 * 120.14185 * 359.49923 * 26 21 20 28 28 C 1.47423 * 108.70297 * 358.59407 * 15 14 13 29 29 H 1.09006 * 109.46912 * 275.36090 * 1 2 3 30 30 H 1.09002 * 109.46824 * 35.35459 * 1 2 3 31 31 H 1.08996 * 109.47601 * 155.35905 * 1 2 3 32 32 H 0.96997 * 119.99760 * 179.97438 * 6 5 3 33 33 H 1.09004 * 110.71848 * 271.96098 * 13 11 2 34 34 H 1.09002 * 110.71777 * 35.22922 * 13 11 2 35 35 H 1.09003 * 109.98639 * 218.66252 * 14 13 11 36 36 H 1.08992 * 109.78144 * 97.49857 * 14 13 11 37 37 H 1.08005 * 120.07259 * 359.95898 * 19 18 16 38 38 H 1.07997 * 119.93467 * 179.97438 * 20 19 18 39 39 H 1.07993 * 119.93171 * 179.74817 * 26 21 20 40 40 H 1.08001 * 120.07766 * 180.25590 * 27 26 21 41 41 H 1.08998 * 110.36799 * 143.19536 * 28 15 14 42 42 H 1.09001 * 110.36263 * 265.40301 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1583 1.2271 -0.3839 5 6 1.5475 2.3350 0.4936 6 7 0.3940 2.2554 1.1226 7 14 2.3740 3.9945 0.2651 8 1 1.9186 4.6029 -1.0108 9 1 2.0130 4.8872 1.3956 10 1 3.8474 3.8129 0.2288 11 6 2.1975 -1.2687 -0.0006 12 1 3.2729 -1.0966 0.0426 13 6 1.7329 -2.1805 1.1658 14 6 2.0341 -3.5995 0.6389 15 7 2.0999 -3.5158 -0.8274 16 6 2.3650 -4.5406 -1.6616 17 8 2.4881 -4.3376 -2.8537 18 6 2.5064 -5.9117 -1.1267 19 6 2.6325 -6.9945 -1.9982 20 6 2.7646 -8.2712 -1.4926 21 6 2.7717 -8.4795 -0.1247 22 6 2.9158 -9.8770 0.4206 23 9 4.2718 -10.1687 0.6038 24 9 2.2489 -9.9702 1.6468 25 9 2.3605 -10.7896 -0.4828 26 6 2.6415 -7.4111 0.7446 27 6 2.5139 -6.1288 0.2521 28 6 1.8215 -2.1265 -1.2345 29 1 -0.3633 0.0960 1.0232 30 1 -0.3633 0.8382 -0.5947 31 1 -0.3634 -0.9340 -0.4284 32 1 -0.0266 3.0583 1.4678 33 1 2.3057 -1.9725 2.0696 34 1 0.6651 -2.0593 1.3482 35 1 1.2392 -4.2837 0.9359 36 1 2.9896 -3.9445 1.0338 37 1 2.6264 -6.8333 -3.0661 38 1 2.8619 -9.1101 -2.1657 39 1 2.6437 -7.5809 1.8112 40 1 2.4165 -5.2951 0.9318 41 1 2.4382 -1.8511 -2.0901 42 1 0.7652 -2.0060 -1.4747 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972786270.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:18 Heat of formation + Delta-G solvation = -102.411710 kcal Electronic energy + Delta-G solvation = -29412.883567 eV Core-core repulsion = 24751.954915 eV Total energy + Delta-G solvation = -4660.928652 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.52120 -48.03699 -47.97940 -40.72002 -38.91674 -37.51698 -35.06090 -32.80089 -31.78805 -31.34688 -29.97907 -28.26875 -26.71892 -26.11698 -24.24614 -23.46962 -22.60852 -22.02459 -20.08581 -19.44970 -18.84711 -18.72850 -18.67467 -17.46915 -17.14973 -16.21705 -15.86251 -15.18686 -15.08027 -14.92844 -14.78464 -14.67940 -14.43755 -14.34346 -14.23868 -14.13588 -13.99288 -13.75939 -13.51840 -13.38404 -13.14298 -12.79684 -12.54993 -12.47837 -12.08943 -12.03033 -11.78831 -11.10454 -10.94439 -10.74197 -10.56241 -10.53701 -10.33360 -10.00521 -9.97395 -9.88911 -9.61736 -9.50310 -8.67096 -8.52573 -6.87853 -5.82629 -3.32618 0.16455 0.85169 2.26549 2.49826 2.93209 3.32405 3.33153 3.39709 3.40407 3.40878 3.63799 4.04720 4.25762 4.37015 4.41246 4.42764 4.76381 4.85634 4.94935 5.08717 5.09374 5.23952 5.31956 5.44491 5.48695 5.58226 5.68299 5.71920 5.79115 5.88210 5.88882 6.15859 6.23478 6.25516 6.39439 6.52667 6.69304 6.76623 7.29226 7.53641 7.64605 7.72299 8.09499 8.29141 9.12426 9.73338 10.21764 11.21510 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.027966 B = 0.002130 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.982830 B =13142.303385 C =13571.401328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.585 5.585 3 C -0.262 4.262 4 H 0.070 0.930 5 C 0.006 3.994 6 N -0.906 5.906 7 Si 0.909 3.091 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.279 1.279 11 C 0.174 3.826 12 H 0.080 0.920 13 C -0.154 4.154 14 C 0.088 3.912 15 N -0.602 5.602 16 C 0.564 3.436 17 O -0.536 6.536 18 C -0.091 4.091 19 C -0.065 4.065 20 C -0.080 4.080 21 C -0.168 4.168 22 C 0.508 3.492 23 F -0.176 7.176 24 F -0.176 7.176 25 F -0.177 7.177 26 C -0.078 4.078 27 C -0.127 4.127 28 C 0.083 3.917 29 H 0.035 0.965 30 H 0.044 0.956 31 H 0.000 1.000 32 H 0.254 0.746 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.148 0.852 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.176 0.824 41 H 0.076 0.924 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.454 -23.085 0.663 23.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.305 5.305 3 C -0.391 4.391 4 H 0.088 0.912 5 C -0.192 4.192 6 N -0.550 5.550 7 Si 0.738 3.262 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.063 3.937 12 H 0.098 0.902 13 C -0.194 4.194 14 C -0.035 4.035 15 N -0.335 5.335 16 C 0.353 3.647 17 O -0.415 6.415 18 C -0.094 4.094 19 C -0.083 4.083 20 C -0.098 4.098 21 C -0.170 4.170 22 C 0.454 3.546 23 F -0.157 7.157 24 F -0.157 7.157 25 F -0.158 7.158 26 C -0.096 4.096 27 C -0.144 4.144 28 C -0.041 4.041 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.018 0.982 32 H 0.064 0.936 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.165 0.835 38 H 0.159 0.841 39 H 0.159 0.841 40 H 0.192 0.808 41 H 0.095 0.905 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.408 -22.858 0.074 23.110 hybrid contribution 0.311 0.528 0.128 0.626 sum 3.719 -22.330 0.201 22.638 Atomic orbital electron populations 1.20850 0.82337 0.95553 0.99759 1.43800 1.01908 0.99785 1.85005 1.19224 0.99150 0.85566 1.35165 0.91211 1.25086 0.97539 0.98763 0.97861 1.70052 1.17647 1.27622 1.39717 0.86199 0.78956 0.83717 0.77299 1.21374 1.21651 1.20400 1.21405 0.96556 0.85884 0.89855 0.90191 1.23317 1.03224 0.92135 1.00739 1.22590 1.00587 0.99888 0.80433 1.48349 1.68088 1.09900 1.07136 1.17836 0.77684 0.83607 0.85616 1.90786 1.51175 1.84446 1.15080 1.20277 1.01004 0.93999 0.94108 1.21287 0.95550 0.90426 1.01077 1.20910 0.97522 0.98111 0.93289 1.20213 1.09111 0.91771 0.95900 1.18319 0.74031 0.86625 0.75644 1.93238 1.32783 1.94447 1.95216 1.93199 1.80667 1.96733 1.45109 1.93198 1.85425 1.69748 1.67422 1.20978 0.96946 0.91508 1.00137 1.22950 0.96926 0.98746 0.95794 1.23126 1.01511 0.78619 1.00823 0.94700 0.93728 0.98162 0.93594 0.90111 0.90227 0.90847 0.90615 0.83452 0.84087 0.84063 0.80751 0.90546 0.90985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.65 7.59 59.85 0.45 4.10 16 2 N -0.58 -13.55 2.96 -171.03 -0.51 -14.06 16 3 C -0.26 -6.79 9.61 -15.06 -0.14 -6.94 16 4 H 0.07 1.78 7.84 -52.49 -0.41 1.37 16 5 C 0.01 0.17 5.18 -17.43 -0.09 0.08 16 6 N -0.91 -25.15 10.57 55.49 0.59 -24.56 16 7 Si 0.91 21.08 29.56 -169.99 -5.03 16.06 16 8 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 9 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 11 C 0.17 3.21 3.54 -65.78 -0.23 2.97 16 12 H 0.08 1.50 7.96 -51.93 -0.41 1.08 16 13 C -0.15 -2.28 6.51 -24.89 -0.16 -2.44 16 14 C 0.09 1.02 4.87 -3.06 -0.01 1.00 16 15 N -0.60 -8.80 3.33 -175.64 -0.58 -9.39 16 16 C 0.56 8.48 7.81 -12.33 -0.10 8.39 16 17 O -0.54 -9.84 16.60 5.32 0.09 -9.75 16 18 C -0.09 -1.06 5.87 -104.97 -0.62 -1.68 16 19 C -0.06 -0.67 9.59 -39.19 -0.38 -1.05 16 20 C -0.08 -0.70 9.38 -39.64 -0.37 -1.07 16 21 C -0.17 -1.49 5.46 -104.53 -0.57 -2.06 16 22 C 0.51 4.43 3.36 36.01 0.12 4.55 16 23 F -0.18 -1.63 17.30 2.25 0.04 -1.59 16 24 F -0.18 -1.57 16.44 2.25 0.04 -1.53 16 25 F -0.18 -1.58 16.45 2.25 0.04 -1.54 16 26 C -0.08 -0.65 9.38 -39.64 -0.37 -1.02 16 27 C -0.13 -1.19 8.61 -39.18 -0.34 -1.53 16 28 C 0.08 1.43 6.48 -2.53 -0.02 1.42 16 29 H 0.03 0.86 7.31 -51.93 -0.38 0.48 16 30 H 0.04 1.12 7.33 -51.93 -0.38 0.74 16 31 H 0.00 0.00 6.34 -51.93 -0.33 -0.33 16 32 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.08 1.27 7.08 -51.93 -0.37 0.90 16 35 H 0.07 0.71 6.78 -51.93 -0.35 0.36 16 36 H 0.08 0.72 6.70 -51.93 -0.35 0.37 16 37 H 0.15 1.49 7.67 -52.48 -0.40 1.08 16 38 H 0.14 0.94 7.59 -52.49 -0.40 0.54 16 39 H 0.14 0.89 7.58 -52.49 -0.40 0.50 16 40 H 0.18 1.42 2.75 -57.68 -0.16 1.26 16 41 H 0.08 1.41 7.99 -51.93 -0.41 1.00 16 42 H 0.07 1.31 6.34 -51.93 -0.33 0.98 16 LS Contribution 351.50 15.07 5.30 5.30 Total: -1.00 -29.90 351.50 -7.50 -37.39 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -4.64 Total: -1.05 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: -2.83 Total: 4.71 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: -0.50 Total: -48.00 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.09 Total: -9.75 kcal Atomic # 9 Polarization: -4.77 SS G_CDS: 0.11 Total: -4.66 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.90 -7.50 -37.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972786270.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.018 kcal (2) G-P(sol) polarization free energy of solvation -29.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds