Wall clock time and date at job start Wed Apr 1 2020 03:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36932 * 119.99894 * 2 1 4 4 H 1.07997 * 120.00142 * 204.23461 * 3 2 1 5 5 C 1.38810 * 120.00410 * 24.24284 * 3 2 1 6 6 N 1.31627 * 119.99838 * 9.06971 * 5 3 2 7 7 Si 1.86793 * 120.00361 * 189.07446 * 5 3 2 8 8 H 1.48501 * 109.47242 * 89.99813 * 7 5 3 9 9 H 1.48502 * 109.47616 * 209.99690 * 7 5 3 10 10 H 1.48503 * 109.47205 * 329.99775 * 7 5 3 11 11 C 1.46496 * 119.99701 * 180.02562 * 2 1 3 12 12 H 1.08997 * 110.88526 * 182.42669 * 11 2 1 13 13 C 1.55161 * 111.03601 * 306.32696 * 11 2 1 14 14 C 1.54334 * 103.01943 * 153.40138 * 13 11 2 15 15 N 1.47017 * 107.26601 * 338.13496 * 14 13 11 16 16 C 1.34775 * 125.64955 * 178.85181 * 15 14 13 17 17 O 1.21550 * 120.00114 * 185.22934 * 16 15 14 18 18 C 1.47853 * 119.99893 * 5.22297 * 16 15 14 19 19 C 1.39570 * 120.14559 * 172.86841 * 18 16 15 20 20 C 1.37952 * 119.85574 * 179.97438 * 19 18 16 21 21 C 1.38361 * 120.14322 * 0.02562 * 20 19 18 22 22 C 1.50703 * 119.85524 * 179.97438 * 21 20 19 23 23 F 1.39901 * 109.47351 * 89.99423 * 22 21 20 24 24 F 1.39893 * 109.47072 * 209.99606 * 22 21 20 25 25 F 1.39900 * 109.46850 * 329.99439 * 22 21 20 26 26 C 1.38356 * 120.29441 * 0.24708 * 21 20 19 27 27 C 1.37959 * 120.14185 * 359.49923 * 26 21 20 28 28 C 1.47423 * 108.70297 * 358.59407 * 15 14 13 29 29 H 1.09006 * 109.46912 * 275.36090 * 1 2 3 30 30 H 1.09002 * 109.46824 * 35.35459 * 1 2 3 31 31 H 1.08996 * 109.47601 * 155.35905 * 1 2 3 32 32 H 0.96997 * 119.99760 * 179.97438 * 6 5 3 33 33 H 1.09004 * 110.71848 * 271.96098 * 13 11 2 34 34 H 1.09002 * 110.71777 * 35.22922 * 13 11 2 35 35 H 1.09003 * 109.98639 * 218.66252 * 14 13 11 36 36 H 1.08992 * 109.78144 * 97.49857 * 14 13 11 37 37 H 1.08005 * 120.07259 * 359.95898 * 19 18 16 38 38 H 1.07997 * 119.93467 * 179.97438 * 20 19 18 39 39 H 1.07993 * 119.93171 * 179.74817 * 26 21 20 40 40 H 1.08001 * 120.07766 * 180.25590 * 27 26 21 41 41 H 1.08998 * 110.36799 * 143.19536 * 28 15 14 42 42 H 1.09001 * 110.36263 * 265.40301 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1583 1.2271 -0.3839 5 6 1.5475 2.3350 0.4936 6 7 0.3940 2.2554 1.1226 7 14 2.3740 3.9945 0.2651 8 1 1.9186 4.6029 -1.0108 9 1 2.0130 4.8872 1.3956 10 1 3.8474 3.8129 0.2288 11 6 2.1975 -1.2687 -0.0006 12 1 3.2729 -1.0966 0.0426 13 6 1.7329 -2.1805 1.1658 14 6 2.0341 -3.5995 0.6389 15 7 2.0999 -3.5158 -0.8274 16 6 2.3650 -4.5406 -1.6616 17 8 2.4881 -4.3376 -2.8537 18 6 2.5064 -5.9117 -1.1267 19 6 2.6325 -6.9945 -1.9982 20 6 2.7646 -8.2712 -1.4926 21 6 2.7717 -8.4795 -0.1247 22 6 2.9158 -9.8770 0.4206 23 9 4.2718 -10.1687 0.6038 24 9 2.2489 -9.9702 1.6468 25 9 2.3605 -10.7896 -0.4828 26 6 2.6415 -7.4111 0.7446 27 6 2.5139 -6.1288 0.2521 28 6 1.8215 -2.1265 -1.2345 29 1 -0.3633 0.0960 1.0232 30 1 -0.3633 0.8382 -0.5947 31 1 -0.3634 -0.9340 -0.4284 32 1 -0.0266 3.0583 1.4678 33 1 2.3057 -1.9725 2.0696 34 1 0.6651 -2.0593 1.3482 35 1 1.2392 -4.2837 0.9359 36 1 2.9896 -3.9445 1.0338 37 1 2.6264 -6.8333 -3.0661 38 1 2.8619 -9.1101 -2.1657 39 1 2.6437 -7.5809 1.8112 40 1 2.4165 -5.2951 0.9318 41 1 2.4382 -1.8511 -2.0901 42 1 0.7652 -2.0060 -1.4747 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972786270.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:17 Heat of formation + Delta-G solvation = -118.534155 kcal Electronic energy + Delta-G solvation = -29413.582689 eV Core-core repulsion = 24751.954915 eV Total energy + Delta-G solvation = -4661.627774 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -51.19953 -48.71125 -48.66506 -41.75183 -39.88957 -38.82963 -36.70053 -33.95311 -33.03237 -32.30144 -31.36677 -29.56232 -28.06616 -27.59617 -25.45801 -24.61885 -23.72369 -22.96210 -21.15088 -20.93275 -19.52482 -19.42439 -19.40277 -18.95782 -18.47937 -17.61342 -17.06711 -16.48050 -16.02633 -15.89165 -15.76860 -15.56398 -15.39455 -15.12696 -15.10092 -14.98351 -14.90070 -14.81367 -14.69847 -14.55941 -14.30178 -14.20044 -13.90205 -13.69929 -13.45519 -13.07336 -12.80786 -12.76836 -12.56297 -12.39970 -12.15785 -12.09470 -11.97829 -11.65365 -11.42451 -11.13763 -10.65040 -10.43181 -10.20514 -9.75169 -8.77800 -7.83261 -5.34278 -0.63281 0.15973 1.47791 1.49487 1.53497 1.57188 1.57857 1.78713 2.50146 2.52768 2.63990 2.96297 3.25160 3.34602 3.37118 3.48281 3.70980 3.76905 3.89107 4.00170 4.10455 4.14764 4.21267 4.27740 4.37797 4.52840 4.57554 4.73493 4.82386 4.88366 4.92904 4.97507 5.00395 5.06249 5.20643 5.23653 5.32196 5.42713 5.54875 5.64997 5.74949 6.32495 6.39800 6.93630 7.14729 7.84123 8.27668 9.18993 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.027966 B = 0.002130 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.982830 B =13142.303385 C =13571.401328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.602 5.602 3 C -0.267 4.267 4 H 0.070 0.930 5 C -0.046 4.046 6 N -0.934 5.934 7 Si 0.967 3.033 8 H -0.290 1.290 9 H -0.294 1.294 10 H -0.269 1.269 11 C 0.166 3.834 12 H 0.076 0.924 13 C -0.143 4.143 14 C 0.091 3.909 15 N -0.603 5.603 16 C 0.562 3.438 17 O -0.581 6.581 18 C -0.108 4.108 19 C -0.071 4.071 20 C -0.076 4.076 21 C -0.168 4.168 22 C 0.513 3.487 23 F -0.178 7.178 24 F -0.175 7.175 25 F -0.178 7.178 26 C -0.072 4.072 27 C -0.118 4.118 28 C 0.095 3.905 29 H 0.015 0.985 30 H 0.012 0.988 31 H 0.028 0.972 32 H 0.249 0.751 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.142 0.858 38 H 0.160 0.840 39 H 0.168 0.832 40 H 0.190 0.810 41 H 0.056 0.944 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.304 -25.374 1.969 25.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.323 5.323 3 C -0.397 4.397 4 H 0.088 0.912 5 C -0.242 4.242 6 N -0.580 5.580 7 Si 0.796 3.204 8 H -0.217 1.217 9 H -0.220 1.220 10 H -0.193 1.193 11 C 0.057 3.943 12 H 0.094 0.906 13 C -0.183 4.183 14 C -0.030 4.030 15 N -0.335 5.335 16 C 0.353 3.647 17 O -0.462 6.462 18 C -0.111 4.111 19 C -0.090 4.090 20 C -0.094 4.094 21 C -0.170 4.170 22 C 0.459 3.541 23 F -0.160 7.160 24 F -0.156 7.156 25 F -0.159 7.159 26 C -0.090 4.090 27 C -0.135 4.135 28 C -0.030 4.030 29 H 0.033 0.967 30 H 0.030 0.970 31 H 0.046 0.954 32 H 0.058 0.942 33 H 0.109 0.891 34 H 0.088 0.912 35 H 0.123 0.877 36 H 0.127 0.873 37 H 0.160 0.840 38 H 0.178 0.822 39 H 0.185 0.815 40 H 0.207 0.793 41 H 0.074 0.926 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.281 -25.196 1.398 25.595 hybrid contribution 0.080 1.112 -0.317 1.159 sum 4.361 -24.084 1.081 24.500 Atomic orbital electron populations 1.20534 0.82589 0.95532 0.98041 1.43942 1.02047 1.00826 1.85478 1.19516 0.99155 0.86930 1.34070 0.91229 1.25768 0.98315 1.01741 0.98378 1.70199 1.18884 1.27865 1.41074 0.85268 0.78531 0.79989 0.76627 1.21688 1.22004 1.19334 1.21536 0.95939 0.84833 0.92010 0.90623 1.23147 1.02592 0.93058 0.99501 1.22832 1.03540 0.98347 0.78248 1.48357 1.67948 1.08620 1.08532 1.18382 0.76537 0.84736 0.85069 1.90759 1.53187 1.85235 1.17033 1.20072 1.03591 0.92012 0.95453 1.21309 0.95939 0.90885 1.00902 1.21065 0.96619 0.97904 0.93773 1.20362 1.08499 0.92077 0.96043 1.18240 0.73849 0.86452 0.75593 1.93238 1.33045 1.94460 1.95230 1.93204 1.80635 1.96723 1.45066 1.93200 1.85427 1.69813 1.67479 1.21261 0.95585 0.90700 1.01420 1.23005 0.96200 0.99674 0.94623 1.22724 1.00297 0.80423 0.99543 0.96717 0.96953 0.95375 0.94192 0.89050 0.91229 0.87699 0.87336 0.83995 0.82224 0.81459 0.79333 0.92571 0.92095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.31 7.59 127.77 0.97 9.28 16 2 N -0.60 -28.21 2.96 -695.03 -2.06 -30.26 16 3 C -0.27 -14.01 9.61 84.03 0.81 -13.20 16 4 H 0.07 3.58 7.84 -2.91 -0.02 3.55 16 5 C -0.05 -2.51 5.18 84.86 0.44 -2.07 16 6 N -0.93 -53.03 10.57 21.65 0.23 -52.80 16 7 Si 0.97 43.87 29.56 68.60 2.03 45.90 16 8 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 9 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 10 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 11 C 0.17 6.04 3.54 46.38 0.16 6.21 16 12 H 0.08 2.80 7.96 -2.39 -0.02 2.79 16 13 C -0.14 -3.95 6.51 31.79 0.21 -3.74 16 14 C 0.09 1.82 4.87 86.73 0.42 2.24 16 15 N -0.60 -16.75 3.33 -827.87 -2.75 -19.51 16 16 C 0.56 16.42 7.81 86.79 0.68 17.10 16 17 O -0.58 -21.64 16.60 -3.87 -0.06 -21.71 16 18 C -0.11 -2.31 5.87 -20.09 -0.12 -2.43 16 19 C -0.07 -1.37 9.59 22.52 0.22 -1.16 16 20 C -0.08 -1.13 9.38 22.23 0.21 -0.92 16 21 C -0.17 -2.43 5.46 -19.81 -0.11 -2.54 16 22 C 0.51 7.40 3.36 71.24 0.24 7.64 16 23 F -0.18 -2.82 17.30 44.97 0.78 -2.05 16 24 F -0.17 -2.55 16.44 44.97 0.74 -1.81 16 25 F -0.18 -2.71 16.45 44.97 0.74 -1.97 16 26 C -0.07 -0.91 9.38 22.23 0.21 -0.70 16 27 C -0.12 -1.78 8.61 22.53 0.19 -1.58 16 28 C 0.10 3.28 6.48 86.85 0.56 3.85 16 29 H 0.01 0.74 7.31 -2.38 -0.02 0.72 16 30 H 0.01 0.62 7.33 -2.39 -0.02 0.60 16 31 H 0.03 1.12 6.34 -2.39 -0.02 1.11 16 32 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 33 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 34 H 0.07 2.09 7.08 -2.39 -0.02 2.07 16 35 H 0.11 1.54 6.78 -2.39 -0.02 1.52 16 36 H 0.11 1.54 6.70 -2.39 -0.02 1.52 16 37 H 0.14 2.83 7.67 -2.91 -0.02 2.80 16 38 H 0.16 1.72 7.59 -2.91 -0.02 1.70 16 39 H 0.17 1.27 7.58 -2.91 -0.02 1.25 16 40 H 0.19 2.16 2.75 -7.79 -0.02 2.14 16 41 H 0.06 2.14 7.99 -2.39 -0.02 2.12 16 42 H 0.06 2.23 6.34 -2.39 -0.02 2.21 16 Total: -1.00 -66.59 351.50 5.80 -60.79 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: 1.07 Total: 5.45 kcal Atomic # 6 Polarization: 12.87 SS G_CDS: 5.09 Total: 17.96 kcal Atomic # 7 Polarization: -97.99 SS G_CDS: -4.58 Total: -102.57 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.06 Total: -21.71 kcal Atomic # 9 Polarization: -8.08 SS G_CDS: 2.26 Total: -5.83 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -66.59 5.80 -60.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972786270.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.741 kcal (2) G-P(sol) polarization free energy of solvation -66.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds