Wall clock time and date at job start Wed Apr 1 2020 03:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36936 * 120.00182 * 2 1 4 4 H 1.08005 * 119.99770 * 204.95344 * 3 2 1 5 5 C 1.38807 * 120.00097 * 24.95276 * 3 2 1 6 6 N 1.31611 * 120.00112 * 5.28826 * 5 3 2 7 7 Si 1.86803 * 119.99873 * 185.29711 * 5 3 2 8 8 H 1.48497 * 109.47149 * 359.97438 * 7 5 3 9 9 H 1.48504 * 109.47277 * 119.99839 * 7 5 3 10 10 H 1.48507 * 109.46642 * 239.99693 * 7 5 3 11 11 C 1.46507 * 119.99893 * 180.02562 * 2 1 3 12 12 H 1.08992 * 110.77883 * 178.21367 * 11 2 1 13 13 C 1.55156 * 110.71901 * 54.97060 * 11 2 1 14 14 C 1.55131 * 101.48718 * 205.96976 * 13 11 2 15 15 N 1.47426 * 104.71900 * 37.29773 * 14 13 11 16 16 C 1.34773 * 125.64783 * 155.81491 * 15 14 13 17 17 O 1.21552 * 120.00155 * 185.52644 * 16 15 14 18 18 C 1.47845 * 120.00009 * 5.53179 * 16 15 14 19 19 C 1.39606 * 120.14367 * 24.70033 * 18 16 15 20 20 C 1.37932 * 119.85338 * 180.25634 * 19 18 16 21 21 C 1.38384 * 120.14385 * 359.76357 * 20 19 18 22 22 C 1.38337 * 120.29346 * 359.97438 * 21 20 19 23 23 C 1.50706 * 119.92777 * 179.97438 * 22 21 20 24 24 F 1.39891 * 109.47097 * 270.01850 * 23 22 21 25 25 F 1.39900 * 109.46640 * 30.02348 * 23 22 21 26 26 F 1.39897 * 109.46998 * 150.02069 * 23 22 21 27 27 C 1.37980 * 120.14604 * 359.97438 * 22 21 20 28 28 C 1.47022 * 108.70371 * 335.55447 * 15 14 13 29 29 H 1.09001 * 109.46790 * 275.04856 * 1 2 3 30 30 H 1.09005 * 109.47244 * 35.04347 * 1 2 3 31 31 H 1.08995 * 109.47791 * 155.04700 * 1 2 3 32 32 H 0.97002 * 120.00270 * 179.97438 * 6 5 3 33 33 H 1.08995 * 111.00623 * 324.21529 * 13 11 2 34 34 H 1.09004 * 111.00410 * 88.02593 * 13 11 2 35 35 H 1.08998 * 110.49614 * 278.45811 * 14 13 11 36 36 H 1.08990 * 110.34121 * 156.06198 * 14 13 11 37 37 H 1.08001 * 120.07532 * 359.97438 * 19 18 16 38 38 H 1.07991 * 119.92895 * 179.74279 * 20 19 18 39 39 H 1.07997 * 119.85689 * 179.97438 * 21 20 19 40 40 H 1.07997 * 120.07406 * 180.02562 * 27 22 21 41 41 H 1.08998 * 109.88414 * 120.70605 * 28 15 14 42 42 H 1.09003 * 109.88186 * 241.87398 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1541 1.2295 -0.3946 5 6 1.5529 2.3319 0.5071 6 7 0.3713 2.2592 1.0822 7 14 2.4267 3.9775 0.3731 8 1 3.7317 3.7908 -0.3104 9 1 1.5882 4.9211 -0.4091 10 1 2.6551 4.5288 1.7331 11 6 2.1975 -1.2688 -0.0006 12 1 3.2729 -1.0944 -0.0323 13 6 1.7505 -2.1601 -1.1893 14 6 2.0689 -3.5788 -0.6485 15 7 1.7322 -3.5174 0.7855 16 6 1.4054 -4.5698 1.5614 17 8 1.0480 -4.3908 2.7093 18 6 1.4817 -5.9420 1.0163 19 6 2.3366 -6.2262 -0.0501 20 6 2.3991 -7.5073 -0.5574 21 6 1.6204 -8.5109 -0.0084 22 6 0.7752 -8.2372 1.0520 23 6 -0.0696 -9.3362 1.6432 24 9 -1.2997 -9.3874 0.9790 25 9 0.5904 -10.5611 1.4978 26 9 -0.2836 -9.0803 3.0018 27 6 0.7040 -6.9601 1.5696 28 6 1.8181 -2.1187 1.2304 29 1 -0.3633 0.0904 1.0237 30 1 -0.3634 0.8414 -0.5901 31 1 -0.3634 -0.9317 -0.4335 32 1 -0.0456 3.0600 1.4369 33 1 0.6849 -2.0434 -1.3861 34 1 2.3366 -1.9431 -2.0824 35 1 3.1261 -3.8092 -0.7804 36 1 1.4520 -4.3233 -1.1515 37 1 2.9444 -5.4437 -0.4800 38 1 3.0570 -7.7276 -1.3850 39 1 1.6727 -9.5123 -0.4094 40 1 0.0440 -6.7478 2.3977 41 1 0.8540 -1.7944 1.6220 42 1 2.5848 -2.0206 1.9990 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972788398.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:22 Heat of formation + Delta-G solvation = -115.961000 kcal Electronic energy + Delta-G solvation = -29624.292491 eV Core-core repulsion = 24962.776298 eV Total energy + Delta-G solvation = -4661.516193 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -50.44960 -47.96748 -47.90239 -40.59879 -38.90956 -37.42108 -34.95589 -32.78249 -31.79143 -31.35190 -29.81804 -28.10927 -26.32385 -26.08852 -24.86455 -22.88514 -22.81158 -22.07562 -20.14592 -19.28434 -18.77617 -18.66799 -18.35912 -17.13583 -16.87550 -16.44566 -15.96290 -15.74714 -15.09963 -14.93066 -14.81878 -14.59577 -14.42984 -14.29839 -14.08637 -14.05859 -13.98120 -13.57765 -13.37901 -13.18720 -13.01810 -12.74719 -12.61452 -12.23557 -12.14486 -11.93713 -11.76960 -11.33926 -10.93433 -10.87409 -10.61106 -10.47726 -10.34068 -10.00149 -9.91259 -9.84797 -9.64810 -9.45270 -8.62938 -8.43790 -6.85431 -5.80634 -3.31602 0.35208 0.66583 2.31046 2.57803 2.99645 3.32947 3.36691 3.39302 3.40084 3.41852 3.71545 4.11141 4.25595 4.40259 4.41805 4.52781 4.66147 4.87943 4.91716 5.03610 5.16458 5.26966 5.33747 5.39052 5.51534 5.63171 5.71847 5.75031 5.82449 5.84433 5.90534 6.21436 6.25396 6.27501 6.43045 6.58665 6.78109 6.79797 7.34053 7.63167 7.69578 7.75518 8.19160 8.31562 9.14576 9.75175 10.24580 11.23233 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.027720 B = 0.002250 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.872199 B =12443.167609 C =12878.092100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.586 5.586 3 C -0.262 4.262 4 H 0.071 0.929 5 C 0.006 3.994 6 N -0.905 5.905 7 Si 0.908 3.092 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.289 1.289 11 C 0.173 3.827 12 H 0.080 0.920 13 C -0.155 4.155 14 C 0.094 3.906 15 N -0.604 5.604 16 C 0.565 3.435 17 O -0.534 6.534 18 C -0.121 4.121 19 C -0.067 4.067 20 C -0.127 4.127 21 C -0.053 4.053 22 C -0.193 4.193 23 C 0.511 3.489 24 F -0.175 7.175 25 F -0.177 7.177 26 F -0.174 7.174 27 C -0.017 4.017 28 C 0.086 3.914 29 H 0.031 0.969 30 H 0.047 0.953 31 H -0.001 1.001 32 H 0.254 0.746 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.151 0.849 38 H 0.142 0.858 39 H 0.139 0.861 40 H 0.147 0.853 41 H 0.076 0.924 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.149 -23.356 -5.713 24.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.307 5.307 3 C -0.392 4.392 4 H 0.089 0.911 5 C -0.193 4.193 6 N -0.549 5.549 7 Si 0.738 3.262 8 H -0.202 1.202 9 H -0.216 1.216 10 H -0.216 1.216 11 C 0.062 3.938 12 H 0.098 0.902 13 C -0.195 4.195 14 C -0.029 4.029 15 N -0.337 5.337 16 C 0.353 3.647 17 O -0.412 6.412 18 C -0.125 4.125 19 C -0.085 4.085 20 C -0.145 4.145 21 C -0.071 4.071 22 C -0.195 4.195 23 C 0.457 3.543 24 F -0.157 7.157 25 F -0.159 7.159 26 F -0.155 7.155 27 C -0.036 4.036 28 C -0.038 4.038 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.018 0.982 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.168 0.832 38 H 0.160 0.840 39 H 0.157 0.843 40 H 0.165 0.835 41 H 0.094 0.906 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.784 -23.126 -4.957 23.814 hybrid contribution 0.204 0.670 0.169 0.720 sum 2.988 -22.456 -4.788 23.154 Atomic orbital electron populations 1.20842 0.82276 0.95540 0.99647 1.43907 1.01968 0.99829 1.84960 1.19257 0.99533 0.85723 1.34662 0.91137 1.25166 0.97244 0.98926 0.97923 1.70063 1.15754 1.27754 1.41310 0.86135 0.78943 0.83784 0.77353 1.20249 1.21582 1.21567 1.21368 0.96461 0.86000 0.89924 0.90223 1.23444 1.03089 0.92867 1.00107 1.22691 0.99487 0.99633 0.81063 1.48437 1.66778 1.07976 1.10547 1.17788 0.78186 0.83429 0.85305 1.90811 1.47126 1.85506 1.17770 1.19973 1.00088 0.94156 0.98238 1.22177 0.95562 0.97812 0.92915 1.21145 1.00083 0.92224 1.00999 1.21133 0.92677 1.00466 0.92853 1.19889 1.03323 0.93967 1.02278 1.18213 0.78518 0.81428 0.76179 1.93236 1.45313 1.96572 1.80546 1.93187 1.80707 1.46505 1.95476 1.93221 1.95094 1.93918 1.33270 1.21017 0.95734 0.89845 0.96960 1.23024 1.02700 0.78098 0.99997 0.95039 0.93419 0.98237 0.93577 0.90199 0.90207 0.91162 0.90826 0.83211 0.84039 0.84319 0.83532 0.90552 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.82 7.71 59.84 0.46 4.29 16 2 N -0.59 -13.78 2.93 -171.39 -0.50 -14.29 16 3 C -0.26 -6.82 9.61 -15.06 -0.14 -6.97 16 4 H 0.07 1.77 7.83 -52.48 -0.41 1.36 16 5 C 0.01 0.17 5.24 -17.44 -0.09 0.08 16 6 N -0.90 -25.70 10.44 55.49 0.58 -25.12 16 7 Si 0.91 21.15 29.56 -169.99 -5.02 16.12 16 8 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 9 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 C 0.17 3.20 3.44 -66.09 -0.23 2.98 16 12 H 0.08 1.43 7.95 -51.93 -0.41 1.02 16 13 C -0.16 -2.23 6.60 -24.46 -0.16 -2.39 16 14 C 0.09 1.09 5.00 -2.41 -0.01 1.08 16 15 N -0.60 -9.28 3.32 -171.49 -0.57 -9.85 16 16 C 0.56 9.06 7.64 -12.33 -0.09 8.96 16 17 O -0.53 -10.67 16.94 5.32 0.09 -10.58 16 18 C -0.12 -1.48 5.67 -104.96 -0.59 -2.08 16 19 C -0.07 -0.59 8.08 -39.18 -0.32 -0.91 16 20 C -0.13 -0.87 10.03 -39.64 -0.40 -1.27 16 21 C -0.05 -0.40 9.39 -39.49 -0.37 -0.77 16 22 C -0.19 -1.90 5.45 -104.68 -0.57 -2.47 16 23 C 0.51 5.05 3.36 36.01 0.12 5.18 16 24 F -0.18 -1.82 17.30 2.25 0.04 -1.78 16 25 F -0.18 -1.65 16.45 2.25 0.04 -1.61 16 26 F -0.17 -1.92 16.45 2.25 0.04 -1.88 16 27 C -0.02 -0.19 8.94 -39.19 -0.35 -0.55 16 28 C 0.09 1.59 6.51 -3.06 -0.02 1.57 16 29 H 0.03 0.83 7.27 -51.93 -0.38 0.45 16 30 H 0.05 1.22 7.25 -51.93 -0.38 0.85 16 31 H 0.00 -0.02 6.12 -51.93 -0.32 -0.33 16 32 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.08 1.26 6.14 -51.93 -0.32 0.94 16 34 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 0.64 6.84 -51.93 -0.36 0.28 16 36 H 0.07 0.72 6.82 -51.93 -0.35 0.36 16 37 H 0.15 1.11 4.61 -52.49 -0.24 0.87 16 38 H 0.14 0.55 8.06 -52.49 -0.42 0.12 16 39 H 0.14 0.75 7.59 -52.49 -0.40 0.35 16 40 H 0.15 1.82 7.38 -52.49 -0.39 1.43 16 41 H 0.08 1.66 7.06 -51.93 -0.37 1.29 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 352.91 15.07 5.32 5.32 Total: -1.00 -31.08 352.91 -7.49 -38.56 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: -4.72 Total: -1.63 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: -2.77 Total: 6.73 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: -0.49 Total: -49.25 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.09 Total: -10.58 kcal Atomic # 9 Polarization: -5.39 SS G_CDS: 0.11 Total: -5.28 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.08 -7.49 -38.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972788398.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.396 kcal (2) G-P(sol) polarization free energy of solvation -31.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds