Wall clock time and date at job start Wed Apr 1 2020 03:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36936 * 120.00051 * 2 1 4 4 H 1.07995 * 120.00340 * 214.11213 * 3 2 1 5 5 C 1.38815 * 119.99894 * 34.10441 * 3 2 1 6 6 N 1.31624 * 119.99838 * 5.41711 * 5 3 2 7 7 Si 1.86801 * 120.00127 * 185.41239 * 5 3 2 8 8 H 1.48496 * 109.46815 * 0.02562 * 7 5 3 9 9 H 1.48507 * 109.46871 * 120.00264 * 7 5 3 10 10 H 1.48499 * 109.47093 * 240.00389 * 7 5 3 11 11 C 1.46504 * 120.00238 * 179.97438 * 2 1 3 12 12 H 1.08996 * 110.63700 * 176.86351 * 11 2 1 13 13 C 1.55158 * 110.71608 * 300.00110 * 11 2 1 14 14 C 1.54916 * 101.61153 * 153.84597 * 13 11 2 15 15 N 1.47466 * 104.81499 * 323.04432 * 14 13 11 16 16 C 1.34775 * 125.63019 * 204.14254 * 15 14 13 17 17 O 1.21553 * 119.99852 * 354.69282 * 16 15 14 18 18 C 1.47847 * 119.99644 * 174.69847 * 16 15 14 19 19 C 1.39589 * 120.14741 * 8.21291 * 18 16 15 20 20 C 1.37934 * 119.85410 * 179.97438 * 19 18 16 21 21 C 1.38388 * 120.14615 * 359.97438 * 20 19 18 22 22 C 1.38335 * 120.29012 * 0.02562 * 21 20 19 23 23 C 1.50695 * 119.92696 * 180.02562 * 22 21 20 24 24 F 1.39894 * 109.47218 * 359.97438 * 23 22 21 25 25 F 1.39902 * 109.47483 * 119.99973 * 23 22 21 26 26 F 1.39905 * 109.46808 * 239.99392 * 23 22 21 27 27 C 1.37985 * 120.14445 * 359.73643 * 22 21 20 28 28 C 1.47024 * 108.71982 * 24.06648 * 15 14 13 29 29 H 1.08993 * 109.47554 * 265.09847 * 1 2 3 30 30 H 1.08998 * 109.47193 * 25.10674 * 1 2 3 31 31 H 1.09003 * 109.46411 * 145.10311 * 1 2 3 32 32 H 0.97000 * 119.99816 * 179.97438 * 6 5 3 33 33 H 1.08996 * 111.00532 * 271.93512 * 13 11 2 34 34 H 1.08998 * 111.00503 * 35.75656 * 13 11 2 35 35 H 1.08998 * 110.36544 * 81.84874 * 14 13 11 36 36 H 1.09000 * 110.36772 * 204.16812 * 14 13 11 37 37 H 1.08001 * 120.07611 * 359.95585 * 19 18 16 38 38 H 1.07997 * 119.92943 * 180.02562 * 20 19 18 39 39 H 1.08001 * 119.85300 * 180.02562 * 21 20 19 40 40 H 1.08000 * 120.07083 * 180.25272 * 27 22 21 41 41 H 1.09003 * 109.88548 * 239.56147 * 28 15 14 42 42 H 1.08997 * 109.87977 * 118.39557 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0903 1.2664 -0.5245 5 6 1.6347 2.2847 0.6741 6 7 0.5445 2.1592 1.4009 7 14 2.4888 3.9413 0.5498 8 1 3.6842 3.8176 -0.3225 9 1 1.5537 4.9380 -0.0311 10 1 2.9072 4.3853 1.9037 11 6 2.1976 -1.2687 0.0006 12 1 3.2717 -1.0921 -0.0553 13 6 1.8436 -2.1063 1.2578 14 6 2.1165 -3.5475 0.7593 15 7 1.6780 -3.5488 -0.6487 16 6 1.2938 -4.6335 -1.3503 17 8 1.3819 -5.7401 -0.8552 18 6 0.7653 -4.4774 -2.7222 19 6 0.8211 -3.2358 -3.3579 20 6 0.3267 -3.0971 -4.6381 21 6 -0.2232 -4.1854 -5.2925 22 6 -0.2815 -5.4185 -4.6683 23 6 -0.8815 -6.5983 -5.3887 24 9 -1.3058 -6.2011 -6.6612 25 9 0.0792 -7.6079 -5.5111 26 9 -1.9754 -7.0811 -4.6623 27 6 0.2140 -5.5720 -3.3896 28 6 1.7275 -2.1711 -1.1597 29 1 -0.3634 -0.0878 1.0238 30 1 -0.3633 0.9305 -0.4360 31 1 -0.3632 -0.8429 -0.5880 32 1 0.1848 2.9269 1.8722 33 1 2.4958 -1.8518 2.0931 34 1 0.7958 -1.9789 1.5298 35 1 3.1801 -3.7766 0.8252 36 1 1.5363 -4.2656 1.3387 37 1 1.2501 -2.3857 -2.8483 38 1 0.3696 -2.1372 -5.1312 39 1 -0.6085 -4.0715 -6.2950 40 1 0.1715 -6.5362 -2.9049 41 1 0.7358 -1.8627 -1.4908 42 1 2.4334 -2.1081 -1.9877 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972788399.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:26 Heat of formation + Delta-G solvation = -105.425289 kcal Electronic energy + Delta-G solvation = -29951.241185 eV Core-core repulsion = 25290.181855 eV Total energy + Delta-G solvation = -4661.059330 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -50.39241 -47.92323 -47.83254 -40.64600 -38.82794 -37.51719 -34.87197 -32.86796 -31.69876 -31.42594 -29.87166 -28.22303 -26.24236 -26.10385 -24.89821 -23.32601 -22.34613 -21.93242 -20.07640 -19.59014 -18.70684 -18.60552 -18.45156 -17.16320 -16.82630 -16.19194 -16.07973 -15.58215 -15.01887 -14.88048 -14.74163 -14.53024 -14.31665 -14.28978 -14.09990 -14.00480 -13.96505 -13.60119 -13.53623 -13.12091 -12.91035 -12.81739 -12.68780 -12.50682 -11.98147 -11.79223 -11.54216 -11.22450 -11.01911 -10.90681 -10.59918 -10.52476 -10.32379 -10.09606 -10.08012 -9.78658 -9.53730 -9.36491 -8.67541 -8.49371 -6.80236 -5.92781 -3.49124 0.45810 0.77859 2.38117 2.63136 2.98994 3.26919 3.35249 3.36428 3.46683 3.48218 3.78122 4.18620 4.27429 4.38221 4.55660 4.68544 4.82650 4.99354 5.05945 5.10360 5.21075 5.32510 5.36123 5.48850 5.52141 5.67341 5.69569 5.78945 5.86255 5.93416 5.98255 6.06799 6.26059 6.33046 6.44825 6.53970 6.66418 6.78800 7.14644 7.52496 7.57683 7.67008 8.14383 8.29480 9.06167 9.64529 10.19151 11.13328 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.018301 B = 0.002652 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.589431 B =10555.273899 C =11490.164581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.157 3.843 2 N -0.583 5.583 3 C -0.270 4.270 4 H 0.067 0.933 5 C 0.016 3.984 6 N -0.898 5.898 7 Si 0.905 3.095 8 H -0.276 1.276 9 H -0.288 1.288 10 H -0.288 1.288 11 C 0.170 3.830 12 H 0.083 0.917 13 C -0.151 4.151 14 C 0.108 3.892 15 N -0.603 5.603 16 C 0.571 3.429 17 O -0.545 6.545 18 C -0.127 4.127 19 C -0.089 4.089 20 C -0.125 4.125 21 C -0.053 4.053 22 C -0.198 4.198 23 C 0.512 3.488 24 F -0.178 7.178 25 F -0.176 7.176 26 F -0.175 7.175 27 C -0.014 4.014 28 C 0.061 3.939 29 H 0.023 0.977 30 H 0.052 0.948 31 H -0.002 1.002 32 H 0.255 0.745 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.177 0.823 38 H 0.143 0.857 39 H 0.141 0.859 40 H 0.144 0.856 41 H 0.087 0.913 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.157 -12.524 -12.033 17.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.303 5.303 3 C -0.400 4.400 4 H 0.085 0.915 5 C -0.185 4.185 6 N -0.540 5.540 7 Si 0.734 3.266 8 H -0.201 1.201 9 H -0.215 1.215 10 H -0.215 1.215 11 C 0.060 3.940 12 H 0.101 0.899 13 C -0.191 4.191 14 C -0.015 4.015 15 N -0.335 5.335 16 C 0.360 3.640 17 O -0.424 6.424 18 C -0.130 4.130 19 C -0.106 4.106 20 C -0.143 4.143 21 C -0.072 4.072 22 C -0.199 4.199 23 C 0.458 3.542 24 F -0.159 7.159 25 F -0.157 7.157 26 F -0.157 7.157 27 C -0.033 4.033 28 C -0.063 4.063 29 H 0.042 0.958 30 H 0.071 0.929 31 H 0.016 0.984 32 H 0.065 0.935 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.193 0.807 38 H 0.161 0.839 39 H 0.159 0.841 40 H 0.162 0.838 41 H 0.104 0.896 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.260 -13.027 -11.717 17.566 hybrid contribution 0.148 0.742 -0.108 0.764 sum -1.112 -12.285 -11.824 17.087 Atomic orbital electron populations 1.20791 0.82922 0.97064 0.97983 1.43775 1.01518 0.99785 1.85254 1.19166 1.05857 0.87677 1.27289 0.91501 1.25317 0.97669 0.99351 0.96144 1.70009 1.22132 1.29758 1.32138 0.86198 0.79120 0.83782 0.77486 1.20081 1.21498 1.21477 1.21415 0.96630 0.86103 0.89856 0.89930 1.23388 1.03104 0.92278 1.00329 1.22323 0.99465 0.99034 0.80638 1.48351 1.64233 1.07319 1.13582 1.17753 0.78007 0.83464 0.84804 1.90764 1.56242 1.24447 1.70951 1.19859 1.03671 0.94317 0.95195 1.23302 0.93953 0.98462 0.94920 1.21254 0.98969 0.99107 0.94969 1.21246 0.94911 0.91025 0.99999 1.19856 1.08836 0.94073 0.97154 1.18211 0.76213 0.82934 0.76887 1.93159 1.90470 1.90607 1.41654 1.93229 1.63652 1.62908 1.95920 1.93233 1.55673 1.89333 1.77429 1.20921 0.91371 0.99414 0.91593 1.23324 1.02099 0.81218 0.99621 0.95819 0.92937 0.98422 0.93472 0.90125 0.90565 0.91485 0.90912 0.80656 0.83919 0.84138 0.83781 0.89562 0.90906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.42 7.98 59.85 0.48 3.90 16 2 N -0.58 -12.74 2.90 -171.39 -0.50 -13.24 16 3 C -0.27 -6.65 9.48 -15.06 -0.14 -6.80 16 4 H 0.07 1.61 7.83 -52.49 -0.41 1.20 16 5 C 0.02 0.40 5.17 -17.43 -0.09 0.31 16 6 N -0.90 -24.28 11.10 55.49 0.62 -23.67 16 7 Si 0.90 20.18 29.56 -169.99 -5.02 15.15 16 8 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 9 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 C 0.17 2.98 3.45 -66.09 -0.23 2.75 16 12 H 0.08 1.43 7.95 -51.93 -0.41 1.02 16 13 C -0.15 -2.46 6.65 -24.58 -0.16 -2.62 16 14 C 0.11 1.57 6.89 -2.50 -0.02 1.56 16 15 N -0.60 -9.07 3.33 -174.80 -0.58 -9.66 16 16 C 0.57 9.01 7.81 -12.33 -0.10 8.91 16 17 O -0.54 -10.03 16.68 5.32 0.09 -9.94 16 18 C -0.13 -1.71 5.87 -104.97 -0.62 -2.32 16 19 C -0.09 -1.02 8.59 -39.19 -0.34 -1.36 16 20 C -0.13 -1.19 10.03 -39.64 -0.40 -1.58 16 21 C -0.05 -0.50 9.43 -39.49 -0.37 -0.88 16 22 C -0.20 -2.17 5.37 -104.68 -0.56 -2.73 16 23 C 0.51 5.45 3.31 36.00 0.12 5.57 16 24 F -0.18 -1.77 15.96 2.25 0.04 -1.74 16 25 F -0.18 -1.97 17.23 2.25 0.04 -1.93 16 26 F -0.18 -2.00 17.24 2.25 0.04 -1.96 16 27 C -0.01 -0.18 9.14 -39.18 -0.36 -0.53 16 28 C 0.06 0.90 4.46 -3.07 -0.01 0.88 16 29 H 0.02 0.56 7.49 -51.93 -0.39 0.18 16 30 H 0.05 1.25 7.25 -51.93 -0.38 0.87 16 31 H 0.00 -0.05 6.05 -51.93 -0.31 -0.36 16 32 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 33 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 34 H 0.08 1.37 7.16 -51.93 -0.37 1.00 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 1.07 8.09 -51.93 -0.42 0.65 16 37 H 0.18 2.01 2.79 -56.65 -0.16 1.85 16 38 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.14 1.01 7.14 -52.49 -0.37 0.64 16 40 H 0.14 1.82 7.67 -52.49 -0.40 1.42 16 41 H 0.09 1.30 4.43 -51.93 -0.23 1.07 16 42 H 0.07 0.94 6.79 -51.93 -0.35 0.59 16 LS Contribution 352.24 15.07 5.31 5.31 Total: -1.00 -28.60 352.24 -7.39 -35.99 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -4.62 Total: 0.62 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: -2.80 Total: 5.07 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: -0.46 Total: -46.56 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.09 Total: -9.94 kcal Atomic # 9 Polarization: -5.75 SS G_CDS: 0.11 Total: -5.63 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.60 -7.39 -35.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972788399.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.439 kcal (2) G-P(sol) polarization free energy of solvation -28.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds