Wall clock time and date at job start Wed Apr 1 2020 03:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36936 * 119.99570 * 2 1 4 4 H 1.08006 * 119.99973 * 203.51255 * 3 2 1 5 5 C 1.38817 * 120.00302 * 23.50549 * 3 2 1 6 6 N 1.31614 * 119.99750 * 11.48693 * 5 3 2 7 7 Si 1.86801 * 120.00107 * 191.48468 * 5 3 2 8 8 H 1.48497 * 109.47088 * 90.00310 * 7 5 3 9 9 H 1.48496 * 109.47092 * 210.00108 * 7 5 3 10 10 H 1.48501 * 109.47176 * 329.99902 * 7 5 3 11 11 C 1.46498 * 120.00419 * 179.97438 * 2 1 3 12 12 H 1.08998 * 109.49793 * 179.97438 * 11 2 1 13 13 C 1.53040 * 109.49502 * 299.99861 * 11 2 1 14 14 C 1.53039 * 109.53524 * 181.31423 * 13 11 2 15 15 C 1.53193 * 109.31460 * 298.63552 * 14 13 11 16 16 N 1.46925 * 108.77553 * 54.63697 * 15 14 13 17 17 C 1.34778 * 120.63048 * 126.36680 * 16 15 14 18 18 O 1.21587 * 119.99897 * 179.97438 * 17 16 15 19 19 C 1.47548 * 120.00142 * 0.02562 * 17 16 15 20 20 C 1.39927 * 120.17887 * 89.97184 * 19 17 16 21 21 F 1.35100 * 120.06979 * 0.04950 * 20 19 17 22 22 C 1.38169 * 119.85099 * 180.02562 * 20 19 17 23 23 C 1.38341 * 120.21412 * 0.02562 * 22 20 19 24 24 C 1.38438 * 120.35695 * 359.97438 * 23 22 20 25 25 F 1.35102 * 119.92343 * 180.28091 * 24 23 22 26 26 C 1.38438 * 120.14829 * 0.02562 * 24 23 22 27 27 F 1.35105 * 120.11237 * 180.02562 * 26 24 23 28 28 C 1.46921 * 118.73451 * 306.64249 * 16 15 14 29 29 H 1.09005 * 109.47210 * 274.32670 * 1 2 3 30 30 H 1.08991 * 109.47587 * 34.32929 * 1 2 3 31 31 H 1.09006 * 109.46778 * 154.33215 * 1 2 3 32 32 H 0.96998 * 120.00219 * 179.97438 * 6 5 3 33 33 H 1.08998 * 109.46105 * 61.29643 * 13 11 2 34 34 H 1.08993 * 109.46149 * 301.33579 * 13 11 2 35 35 H 1.09003 * 109.49609 * 178.68161 * 14 13 11 36 36 H 1.09003 * 109.50001 * 58.59135 * 14 13 11 37 37 H 1.08997 * 109.58629 * 294.84636 * 15 14 13 38 38 H 1.09005 * 109.58078 * 174.42253 * 15 14 13 39 39 H 1.07998 * 119.89227 * 179.97438 * 22 20 19 40 40 H 1.08001 * 119.81613 * 179.97438 * 23 22 20 41 41 H 1.09005 * 109.58636 * 173.14251 * 28 16 15 42 42 H 1.08998 * 109.58751 * 293.56849 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1624 1.2249 -0.3732 5 6 1.5418 2.3383 0.4795 6 7 0.4050 2.2575 1.1377 7 14 2.3376 4.0034 0.1905 8 1 1.8431 4.5731 -1.0886 9 1 1.9900 4.9186 1.3071 10 1 3.8124 3.8423 0.1234 11 6 2.1976 -1.2687 0.0006 12 1 3.2693 -1.0699 0.0000 13 6 1.8283 -2.0711 1.2503 14 6 2.6177 -3.3820 1.2685 15 6 2.2498 -4.2122 0.0347 16 7 2.4655 -3.3946 -1.1669 17 6 3.2367 -3.8465 -2.1756 18 8 3.4070 -3.1605 -3.1649 19 6 3.8733 -5.1741 -2.0799 20 6 3.2056 -6.3101 -2.5508 21 9 1.9749 -6.1944 -3.0960 22 6 3.8079 -7.5500 -2.4572 23 6 5.0680 -7.6716 -1.8994 24 6 5.7365 -6.5536 -1.4307 25 9 6.9691 -6.6817 -0.8927 26 6 5.1470 -5.3040 -1.5170 27 9 5.8003 -4.2133 -1.0599 28 6 1.8294 -2.0725 -1.2452 29 1 -0.3634 0.0775 1.0248 30 1 -0.3634 0.8486 -0.5795 31 1 -0.3633 -0.9263 -0.4452 32 1 -0.0195 3.0626 1.4730 33 1 0.7607 -2.2903 1.2389 34 1 2.0698 -1.4894 2.1398 35 1 2.3718 -3.9423 2.1706 36 1 3.6856 -3.1639 1.2551 37 1 1.2023 -4.5079 0.0923 38 1 2.8804 -5.1002 -0.0095 39 1 3.2929 -8.4273 -2.8201 40 1 5.5326 -8.6441 -1.8291 41 1 2.1827 -1.5491 -2.1336 42 1 0.7469 -2.1902 -1.2941 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027548049.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:10 Heat of formation + Delta-G solvation = -107.616634 kcal Electronic energy + Delta-G solvation = -30805.068875 eV Core-core repulsion = 26143.914520 eV Total energy + Delta-G solvation = -4661.154354 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -49.92119 -49.47956 -48.98531 -40.39068 -38.76334 -37.45219 -35.15503 -32.61770 -31.73497 -31.31179 -30.53318 -28.80869 -26.06117 -25.86085 -24.26656 -23.47520 -23.34197 -21.71773 -20.39782 -18.95525 -18.67996 -18.33340 -17.96520 -17.20968 -16.78204 -16.67396 -16.30918 -15.96866 -15.81781 -15.34597 -15.09176 -14.96554 -14.89989 -14.60695 -14.14745 -14.04622 -13.71882 -13.54099 -13.47893 -12.87386 -12.70943 -12.52944 -12.44150 -12.29444 -12.17391 -11.99567 -11.10274 -10.98149 -10.84949 -10.69259 -10.44293 -10.35288 -10.20216 -10.08153 -9.89864 -9.76713 -9.57676 -9.16965 -8.66287 -8.44316 -6.76303 -5.72377 -3.19919 0.09005 0.21191 2.31248 2.49571 2.83268 3.13271 3.40401 3.46452 3.46819 3.48354 3.85841 3.86289 4.15011 4.23132 4.49496 4.82085 4.86965 5.01959 5.09076 5.16156 5.21955 5.26859 5.38639 5.43228 5.47802 5.51997 5.71275 5.80349 5.93755 6.03987 6.11762 6.16391 6.33728 6.45628 6.54819 6.74423 6.90404 6.96968 7.37073 7.37536 7.72440 7.82318 8.01709 8.40126 9.23500 9.85210 10.33718 11.32272 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.018319 B = 0.003093 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.102166 B = 9049.268650 C = 9484.195938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.591 5.591 3 C -0.256 4.256 4 H 0.069 0.931 5 C 0.004 3.996 6 N -0.907 5.907 7 Si 0.906 3.094 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.169 3.831 12 H 0.066 0.934 13 C -0.132 4.132 14 C -0.132 4.132 15 C 0.107 3.893 16 N -0.588 5.588 17 C 0.560 3.440 18 O -0.517 6.517 19 C -0.160 4.160 20 C 0.152 3.848 21 F -0.114 7.114 22 C -0.135 4.135 23 C -0.084 4.084 24 C 0.059 3.941 25 F -0.119 7.119 26 C 0.130 3.870 27 F -0.105 7.105 28 C 0.096 3.904 29 H 0.031 0.969 30 H 0.043 0.957 31 H -0.002 1.002 32 H 0.252 0.748 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.161 0.839 40 H 0.162 0.838 41 H 0.092 0.908 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.921 -24.784 -3.103 25.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.313 5.313 3 C -0.385 4.385 4 H 0.086 0.914 5 C -0.194 4.194 6 N -0.552 5.552 7 Si 0.736 3.264 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.059 3.941 12 H 0.084 0.916 13 C -0.171 4.171 14 C -0.171 4.171 15 C -0.016 4.016 16 N -0.320 5.320 17 C 0.345 3.655 18 O -0.393 6.393 19 C -0.166 4.166 20 C 0.132 3.868 21 F -0.092 7.092 22 C -0.153 4.153 23 C -0.103 4.103 24 C 0.039 3.961 25 F -0.098 7.098 26 C 0.109 3.891 27 F -0.083 7.083 28 C -0.027 4.027 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.016 0.984 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.178 0.822 40 H 0.180 0.820 41 H 0.111 0.889 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.894 -24.153 -3.534 25.112 hybrid contribution 0.457 1.122 0.106 1.216 sum 6.352 -23.031 -3.428 24.136 Atomic orbital electron populations 1.20802 0.82551 0.95504 0.99415 1.43871 1.01826 0.99923 1.85675 1.19248 0.98661 0.85457 1.35177 0.91365 1.25021 0.97781 0.98540 0.98067 1.70058 1.18773 1.27275 1.39118 0.86232 0.78901 0.83980 0.77311 1.21435 1.21749 1.20448 1.20495 0.96669 0.86367 0.90552 0.91567 1.22126 0.99429 0.94509 1.01073 1.21941 1.01315 0.97517 0.96340 1.21802 1.01575 0.93366 0.84865 1.48156 1.47745 1.19111 1.17003 1.17619 0.79467 0.84573 0.83868 1.90854 1.60972 1.56787 1.30648 1.19959 0.95239 0.95921 1.05450 1.17291 0.81348 0.92252 0.95915 1.91611 1.38566 1.96654 1.82393 1.21018 0.95602 0.96655 1.02074 1.21024 0.94189 0.98370 0.96714 1.17461 0.83175 0.92572 1.02923 1.91584 1.38283 1.96375 1.83524 1.17259 0.90337 0.82928 0.98576 1.91646 1.79604 1.51395 1.85671 1.22483 0.97178 0.80492 1.02536 0.95075 0.93814 0.98369 0.93757 0.92303 0.91197 0.90974 0.91618 0.90754 0.91063 0.82166 0.82045 0.88917 0.91223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.91 8.03 59.85 0.48 4.39 16 2 N -0.59 -14.69 2.81 -173.60 -0.49 -15.17 16 3 C -0.26 -7.09 9.58 -15.06 -0.14 -7.23 16 4 H 0.07 1.89 7.82 -52.48 -0.41 1.47 16 5 C 0.00 0.12 5.12 -17.43 -0.09 0.03 16 6 N -0.91 -26.29 10.66 55.49 0.59 -25.70 16 7 Si 0.91 22.17 29.57 -169.99 -5.03 17.14 16 8 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 9 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 C 0.17 3.45 2.72 -68.03 -0.19 3.27 16 12 H 0.07 1.45 7.87 -51.93 -0.41 1.04 16 13 C -0.13 -2.28 5.15 -26.69 -0.14 -2.42 16 14 C -0.13 -1.75 6.08 -26.61 -0.16 -1.91 16 15 C 0.11 1.32 6.34 -3.71 -0.02 1.30 16 16 N -0.59 -9.33 2.98 -174.26 -0.52 -9.85 16 17 C 0.56 9.32 6.42 -12.46 -0.08 9.24 16 18 O -0.52 -10.60 16.52 5.29 0.09 -10.51 16 19 C -0.16 -2.03 3.64 -104.86 -0.38 -2.41 16 20 C 0.15 1.51 7.29 -38.97 -0.28 1.23 16 21 F -0.11 -1.29 16.83 2.25 0.04 -1.26 16 22 C -0.13 -0.81 10.01 -39.57 -0.40 -1.20 16 23 C -0.08 -0.48 10.01 -39.47 -0.40 -0.87 16 24 C 0.06 0.53 7.29 -39.43 -0.29 0.24 16 25 F -0.12 -1.17 17.18 2.25 0.04 -1.13 16 26 C 0.13 1.54 7.15 -38.90 -0.28 1.27 16 27 F -0.11 -1.50 16.74 2.25 0.04 -1.46 16 28 C 0.10 1.79 5.77 -3.94 -0.02 1.77 16 29 H 0.03 0.81 7.38 -51.93 -0.38 0.42 16 30 H 0.04 1.15 7.28 -51.93 -0.38 0.77 16 31 H 0.00 -0.04 6.35 -51.93 -0.33 -0.37 16 32 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 33 H 0.06 1.01 7.72 -51.93 -0.40 0.61 16 34 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.73 6.22 -51.93 -0.32 0.41 16 39 H 0.16 0.46 8.06 -52.49 -0.42 0.04 16 40 H 0.16 0.38 8.06 -52.49 -0.42 -0.04 16 41 H 0.09 1.96 7.00 -51.93 -0.36 1.59 16 42 H 0.07 1.27 6.48 -51.93 -0.34 0.93 16 LS Contribution 356.33 15.07 5.37 5.37 Total: -1.00 -32.52 356.33 -7.26 -39.78 By element: Atomic # 1 Polarization: 1.12 SS G_CDS: -5.01 Total: -3.88 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: -2.39 Total: 6.67 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: -0.42 Total: -50.73 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.09 Total: -10.51 kcal Atomic # 9 Polarization: -3.96 SS G_CDS: 0.11 Total: -3.85 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.03 Total: 17.14 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.52 -7.26 -39.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027548049.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.832 kcal (2) G-P(sol) polarization free energy of solvation -32.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds