Wall clock time and date at job start Wed Apr 1 2020 02:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46899 * 109.46930 * 2 1 4 4 C 1.39117 * 110.99858 * 209.17058 * 3 2 1 5 5 N 1.32567 * 120.11237 * 236.07011 * 4 3 2 6 6 C 1.32307 * 119.94438 * 179.97438 * 5 4 3 7 7 C 1.38068 * 120.16455 * 359.97438 * 6 5 4 8 8 N 1.32349 * 120.22026 * 0.02562 * 7 6 5 9 9 C 1.32069 * 120.05780 * 359.97438 * 8 7 6 10 10 F 1.35098 * 120.08300 * 180.02562 * 9 8 7 11 11 C 1.46904 * 110.99696 * 85.21942 * 3 2 1 12 12 H 1.09003 * 109.46747 * 174.67219 * 11 3 2 13 13 C 1.52999 * 109.47174 * 54.68106 * 11 3 2 14 14 C 1.52993 * 109.47274 * 294.67392 * 11 3 2 15 15 N 1.46497 * 109.47045 * 304.29265 * 14 11 3 16 16 C 1.34783 * 119.99910 * 179.97438 * 15 14 11 17 17 O 1.21280 * 120.00060 * 0.02562 * 16 15 14 18 18 C 1.50696 * 119.99943 * 180.02562 * 16 15 14 19 19 S 1.81005 * 109.47255 * 180.02562 * 18 16 15 20 20 C 1.76200 * 99.99895 * 180.02562 * 19 18 16 21 21 H 1.07999 * 120.00380 * 359.97438 * 20 19 18 22 22 C 1.38799 * 119.99501 * 180.02562 * 20 19 18 23 23 N 1.31627 * 120.00316 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99842 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46863 * 89.99770 * 24 22 20 26 26 H 1.48496 * 109.47160 * 209.99866 * 24 22 20 27 27 H 1.48499 * 109.46876 * 329.99918 * 24 22 20 28 28 H 1.08999 * 109.47346 * 317.38011 * 1 2 3 29 29 H 1.08998 * 109.47184 * 77.37403 * 1 2 3 30 30 H 1.08998 * 109.47554 * 197.37721 * 1 2 3 31 31 H 1.08993 * 109.47071 * 239.99736 * 2 1 3 32 32 H 1.09000 * 109.46587 * 119.99717 * 2 1 3 33 33 H 1.07997 * 119.91291 * 179.97438 * 6 5 4 34 34 H 1.08001 * 119.88435 * 180.27630 * 7 6 5 35 35 H 1.08996 * 109.47023 * 180.02562 * 13 11 3 36 36 H 1.09003 * 109.46559 * 299.99228 * 13 11 3 37 37 H 1.08990 * 109.47892 * 59.99328 * 13 11 3 38 38 H 1.08996 * 109.47093 * 64.29568 * 14 11 3 39 39 H 1.09008 * 109.47277 * 184.29658 * 14 11 3 40 40 H 0.97001 * 120.00577 * 359.97438 * 15 14 11 41 41 H 1.09003 * 109.47569 * 300.00497 * 18 16 15 42 42 H 1.09005 * 109.47266 * 60.00437 * 18 16 15 43 43 H 0.97002 * 120.00388 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.2550 1.4770 -0.6330 5 7 4.2932 1.9966 0.0069 6 6 5.4667 2.0821 -0.5981 7 6 5.6133 1.6308 -1.8947 8 7 4.5811 1.1110 -2.5398 9 6 3.4058 1.0214 -1.9442 10 9 2.3520 0.4904 -2.6020 11 6 2.0873 1.9194 1.3667 12 1 2.5410 2.9103 1.3473 13 6 2.9337 0.9882 2.2371 14 6 0.6750 2.0162 1.9470 15 7 -0.1635 2.8249 1.0587 16 6 -1.4560 3.0471 1.3696 17 8 -1.9247 2.5778 2.3850 18 6 -2.3187 3.8784 0.4555 19 16 -3.9895 3.9932 1.1421 20 6 -4.7594 4.9884 -0.0914 21 1 -4.1907 5.3268 -0.9449 22 6 -6.0966 5.3385 0.0345 23 7 -6.7897 4.9266 1.0749 24 14 -6.9128 6.3942 -1.2728 25 1 -7.4971 5.5200 -2.3213 26 1 -7.9879 7.2084 -0.6513 27 1 -5.9019 7.2935 -1.8849 28 1 -0.3634 0.7562 0.6958 29 1 -0.3633 0.2246 -1.0028 30 1 -0.3634 -0.9807 0.3069 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 6.3121 2.5058 -0.0764 34 1 6.5743 1.6987 -2.3828 35 1 2.9835 1.3845 3.2512 36 1 2.4801 -0.0027 2.2565 37 1 3.9398 0.9192 1.8237 38 1 0.2501 1.0166 2.0374 39 1 0.7177 2.4833 2.9310 40 1 0.2115 3.2005 0.2467 41 1 -1.8940 4.8782 0.3650 42 1 -2.3611 3.4113 -0.5284 43 1 -7.7243 5.1709 1.1627 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089576607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:33:07 Heat of formation + Delta-G solvation = 11.631763 kcal Electronic energy + Delta-G solvation = -27689.779559 eV Core-core repulsion = 23619.929341 eV Total energy + Delta-G solvation = -4069.850218 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.127 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.48968 -41.82677 -39.86027 -38.50978 -34.93087 -34.20649 -32.40289 -32.15495 -31.84727 -29.58417 -28.95036 -26.14966 -25.41196 -25.20446 -24.33414 -22.96104 -20.61312 -20.18806 -18.83617 -18.50359 -18.16374 -17.74567 -16.82402 -16.28333 -16.13705 -16.03934 -15.53797 -15.01591 -14.81354 -14.77724 -14.59810 -14.12742 -13.95319 -13.70463 -13.57375 -13.35678 -13.18015 -12.90779 -12.59756 -12.39928 -12.27869 -12.07206 -11.95137 -11.77896 -11.62072 -11.07106 -11.03927 -10.99527 -10.73665 -10.64121 -10.36912 -9.78904 -9.76938 -9.37008 -9.04353 -8.83907 -8.66578 -8.20356 -6.46592 -6.19091 -3.89085 0.12021 0.44930 2.57899 2.88704 3.05897 3.13666 3.17444 3.24509 3.30289 3.35260 3.60585 3.68604 3.80166 4.23276 4.33897 4.41413 4.55064 4.66277 4.71188 4.80631 4.92090 4.98128 5.16013 5.16755 5.21702 5.28295 5.35112 5.44983 5.52198 5.65777 5.74504 5.75353 5.85125 5.90660 5.94996 6.14138 6.19933 6.28034 6.43385 6.64619 6.67052 7.08516 7.62547 7.78661 8.38163 8.65908 9.26425 10.88314 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.017069 B = 0.002462 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.994618 B =11372.127426 C =12120.171522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.037 3.963 3 N -0.459 5.459 4 C 0.262 3.738 5 N -0.450 5.450 6 C 0.069 3.931 7 C 0.047 3.953 8 N -0.448 5.448 9 C 0.246 3.754 10 F -0.094 7.094 11 C 0.078 3.922 12 H 0.105 0.895 13 C -0.180 4.180 14 C 0.118 3.882 15 N -0.729 5.729 16 C 0.532 3.468 17 O -0.520 6.520 18 C -0.153 4.153 19 S -0.060 6.060 20 C -0.534 4.534 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.093 0.907 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.179 0.821 34 H 0.179 0.821 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.403 0.597 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.587 -9.188 -2.928 30.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.087 4.087 3 N -0.175 5.175 4 C 0.025 3.975 5 N -0.170 5.170 6 C -0.091 4.091 7 C -0.112 4.112 8 N -0.168 5.168 9 C 0.084 3.916 10 F -0.073 7.073 11 C -0.029 4.029 12 H 0.123 0.877 13 C -0.239 4.239 14 C -0.007 4.007 15 N -0.384 5.384 16 C 0.318 3.682 17 O -0.395 6.395 18 C -0.304 4.304 19 S 0.166 5.834 20 C -0.682 4.682 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.504 5.504 24 Si 0.744 3.256 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 H 0.111 0.889 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.196 0.804 34 H 0.196 0.804 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.238 0.762 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 27.162 -9.724 -1.372 28.883 hybrid contribution 0.571 1.007 -2.371 2.638 sum 27.733 -8.717 -3.743 29.311 Atomic orbital electron populations 1.22321 0.92601 1.03542 1.04512 1.22636 0.98357 0.84797 1.02948 1.59360 1.17558 1.21550 1.19082 1.20731 0.90270 0.95569 0.90966 1.68619 0.98559 1.15074 1.34714 1.23708 0.95447 0.96364 0.93623 1.23422 0.97476 0.96915 0.93383 1.67737 0.98547 1.13279 1.37203 1.18553 0.85020 0.99673 0.88319 1.91657 1.51849 1.82949 1.80817 1.21997 0.95868 1.00524 0.84478 0.87706 1.22405 1.00921 0.99597 1.00943 1.21596 0.88101 0.97179 0.93783 1.45956 1.10755 1.54764 1.26974 1.20293 0.81347 0.80233 0.86340 1.90703 1.72678 1.49889 1.26214 1.23524 1.03295 1.01485 1.02048 1.85357 0.97125 1.68382 1.32506 1.22871 0.98460 1.37144 1.09769 0.90962 1.24986 0.96212 0.96102 0.96293 1.70017 1.09116 1.43431 1.27787 0.86176 0.78894 0.79788 0.80697 1.20282 1.20780 1.19705 0.88895 0.91772 0.91769 0.90080 0.91354 0.80353 0.80394 0.90829 0.91983 0.90583 0.90245 0.90605 0.76206 0.89347 0.89218 0.92225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.81 9.60 37.16 0.36 -1.46 16 2 C 0.04 0.33 4.97 -3.82 -0.02 0.31 16 3 N -0.46 -4.27 3.89 -165.40 -0.64 -4.91 16 4 C 0.26 2.44 6.03 -154.58 -0.93 1.51 16 5 N -0.45 -3.54 6.93 -12.17 -0.08 -3.62 16 6 C 0.07 0.36 11.21 -17.41 -0.20 0.16 16 7 C 0.05 0.27 11.21 -17.39 -0.19 0.08 16 8 N -0.45 -4.24 10.50 -13.24 -0.14 -4.38 16 9 C 0.25 2.53 7.87 -16.93 -0.13 2.39 16 10 F -0.09 -1.06 15.09 2.25 0.03 -1.03 16 11 C 0.08 0.69 2.10 -67.71 -0.14 0.54 16 12 H 0.10 0.96 7.57 -51.93 -0.39 0.56 16 13 C -0.18 -1.30 8.50 37.16 0.32 -0.99 16 14 C 0.12 1.31 4.23 -4.05 -0.02 1.29 16 15 N -0.73 -9.71 4.25 -60.30 -0.26 -9.96 16 16 C 0.53 9.79 7.48 -10.98 -0.08 9.71 16 17 O -0.52 -11.55 15.86 5.56 0.09 -11.46 16 18 C -0.15 -3.12 6.16 36.00 0.22 -2.90 16 19 S -0.06 -1.64 20.57 -107.50 -2.21 -3.86 16 20 C -0.53 -15.35 9.50 30.94 0.29 -15.06 16 21 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.33 13.22 55.49 0.73 -25.60 16 24 Si 0.92 21.63 29.55 -169.99 -5.02 16.61 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 28 H 0.09 1.15 2.89 -51.93 -0.15 1.00 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.73 5.51 -51.93 -0.29 0.44 16 32 H 0.07 0.53 5.17 -51.93 -0.27 0.27 16 33 H 0.18 0.28 8.06 -52.49 -0.42 -0.14 16 34 H 0.18 0.38 8.06 -52.49 -0.42 -0.04 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.44 5.86 -51.93 -0.30 0.13 16 37 H 0.08 0.57 6.06 -51.93 -0.31 0.25 16 38 H 0.08 0.93 5.56 -51.93 -0.29 0.64 16 39 H 0.08 0.88 8.14 -51.92 -0.42 0.45 16 40 H 0.40 4.78 8.17 -40.82 -0.33 4.45 16 41 H 0.09 1.69 8.14 -51.91 -0.42 1.26 16 42 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 43 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 363.40 15.07 5.48 5.48 Total: -1.00 -35.29 363.40 -7.91 -43.21 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -5.26 Total: 1.93 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -0.62 Total: -2.40 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: -0.39 Total: -48.48 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.09 Total: -11.46 kcal Atomic # 9 Polarization: -1.06 SS G_CDS: 0.03 Total: -1.03 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.29 -7.91 -43.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089576607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.837 kcal (2) G-P(sol) polarization free energy of solvation -35.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds