Wall clock time and date at job start Wed Apr 1 2020 02:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46899 * 109.46930 * 2 1 4 4 C 1.39117 * 110.99858 * 209.17058 * 3 2 1 5 5 N 1.32567 * 120.11237 * 236.07011 * 4 3 2 6 6 C 1.32307 * 119.94438 * 179.97438 * 5 4 3 7 7 C 1.38068 * 120.16455 * 359.97438 * 6 5 4 8 8 N 1.32349 * 120.22026 * 0.02562 * 7 6 5 9 9 C 1.32069 * 120.05780 * 359.97438 * 8 7 6 10 10 F 1.35098 * 120.08300 * 180.02562 * 9 8 7 11 11 C 1.46904 * 110.99696 * 85.21942 * 3 2 1 12 12 H 1.09003 * 109.46747 * 174.67219 * 11 3 2 13 13 C 1.52999 * 109.47174 * 54.68106 * 11 3 2 14 14 C 1.52993 * 109.47274 * 294.67392 * 11 3 2 15 15 N 1.46497 * 109.47045 * 304.29265 * 14 11 3 16 16 C 1.34783 * 119.99910 * 179.97438 * 15 14 11 17 17 O 1.21280 * 120.00060 * 0.02562 * 16 15 14 18 18 C 1.50696 * 119.99943 * 180.02562 * 16 15 14 19 19 S 1.81005 * 109.47255 * 180.02562 * 18 16 15 20 20 C 1.76200 * 99.99895 * 180.02562 * 19 18 16 21 21 H 1.07999 * 120.00380 * 359.97438 * 20 19 18 22 22 C 1.38799 * 119.99501 * 180.02562 * 20 19 18 23 23 N 1.31627 * 120.00316 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99842 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46863 * 89.99770 * 24 22 20 26 26 H 1.48496 * 109.47160 * 209.99866 * 24 22 20 27 27 H 1.48499 * 109.46876 * 329.99918 * 24 22 20 28 28 H 1.08999 * 109.47346 * 317.38011 * 1 2 3 29 29 H 1.08998 * 109.47184 * 77.37403 * 1 2 3 30 30 H 1.08998 * 109.47554 * 197.37721 * 1 2 3 31 31 H 1.08993 * 109.47071 * 239.99736 * 2 1 3 32 32 H 1.09000 * 109.46587 * 119.99717 * 2 1 3 33 33 H 1.07997 * 119.91291 * 179.97438 * 6 5 4 34 34 H 1.08001 * 119.88435 * 180.27630 * 7 6 5 35 35 H 1.08996 * 109.47023 * 180.02562 * 13 11 3 36 36 H 1.09003 * 109.46559 * 299.99228 * 13 11 3 37 37 H 1.08990 * 109.47892 * 59.99328 * 13 11 3 38 38 H 1.08996 * 109.47093 * 64.29568 * 14 11 3 39 39 H 1.09008 * 109.47277 * 184.29658 * 14 11 3 40 40 H 0.97001 * 120.00577 * 359.97438 * 15 14 11 41 41 H 1.09003 * 109.47569 * 300.00497 * 18 16 15 42 42 H 1.09005 * 109.47266 * 60.00437 * 18 16 15 43 43 H 0.97002 * 120.00388 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.2550 1.4770 -0.6330 5 7 4.2932 1.9966 0.0069 6 6 5.4667 2.0821 -0.5981 7 6 5.6133 1.6308 -1.8947 8 7 4.5811 1.1110 -2.5398 9 6 3.4058 1.0214 -1.9442 10 9 2.3520 0.4904 -2.6020 11 6 2.0873 1.9194 1.3667 12 1 2.5410 2.9103 1.3473 13 6 2.9337 0.9882 2.2371 14 6 0.6750 2.0162 1.9470 15 7 -0.1635 2.8249 1.0587 16 6 -1.4560 3.0471 1.3696 17 8 -1.9247 2.5778 2.3850 18 6 -2.3187 3.8784 0.4555 19 16 -3.9895 3.9932 1.1421 20 6 -4.7594 4.9884 -0.0914 21 1 -4.1907 5.3268 -0.9449 22 6 -6.0966 5.3385 0.0345 23 7 -6.7897 4.9266 1.0749 24 14 -6.9128 6.3942 -1.2728 25 1 -7.4971 5.5200 -2.3213 26 1 -7.9879 7.2084 -0.6513 27 1 -5.9019 7.2935 -1.8849 28 1 -0.3634 0.7562 0.6958 29 1 -0.3633 0.2246 -1.0028 30 1 -0.3634 -0.9807 0.3069 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 6.3121 2.5058 -0.0764 34 1 6.5743 1.6987 -2.3828 35 1 2.9835 1.3845 3.2512 36 1 2.4801 -0.0027 2.2565 37 1 3.9398 0.9192 1.8237 38 1 0.2501 1.0166 2.0374 39 1 0.7177 2.4833 2.9310 40 1 0.2115 3.2005 0.2467 41 1 -1.8940 4.8782 0.3650 42 1 -2.3611 3.4113 -0.5284 43 1 -7.7243 5.1709 1.1627 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089576607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:33:06 Heat of formation + Delta-G solvation = -13.611535 kcal Electronic energy + Delta-G solvation = -27690.874190 eV Core-core repulsion = 23619.929341 eV Total energy + Delta-G solvation = -4070.944850 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.127 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.20683 -42.43037 -40.90921 -39.60388 -35.86048 -35.03036 -34.58266 -33.05059 -32.54077 -30.94444 -29.69771 -27.74692 -26.95195 -25.85367 -24.93807 -23.72846 -21.71041 -21.28911 -19.82416 -19.40697 -19.13986 -18.83011 -17.71481 -17.50543 -17.27722 -16.91368 -16.87725 -16.34700 -16.04129 -15.87381 -15.45513 -15.25170 -14.82694 -14.69494 -14.55048 -14.44504 -14.28950 -14.08374 -13.83422 -13.38588 -13.16370 -13.10759 -13.03174 -12.89218 -12.74190 -12.66790 -12.57176 -12.26748 -11.79381 -11.70073 -11.50371 -11.14349 -11.03788 -10.88281 -10.33961 -10.27586 -10.06866 -9.28964 -8.65391 -8.34601 -6.11983 -0.42695 -0.10899 1.27271 1.41890 1.46708 1.57587 1.64425 1.95724 2.26263 2.30861 2.36234 2.59423 2.99314 3.09579 3.17323 3.33296 3.58273 3.85781 3.90482 3.99730 4.06074 4.11550 4.19803 4.27837 4.30549 4.39274 4.45062 4.51953 4.56804 4.60461 4.76847 4.84095 4.91359 4.99841 5.16392 5.28196 5.37241 5.40478 5.41921 5.54317 5.79012 6.09309 6.19944 6.51998 6.54625 7.06770 7.26002 8.74546 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.017069 B = 0.002462 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.994618 B =11372.127426 C =12120.171522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.044 3.956 3 N -0.469 5.469 4 C 0.253 3.747 5 N -0.458 5.458 6 C 0.083 3.917 7 C 0.056 3.944 8 N -0.474 5.474 9 C 0.216 3.784 10 F -0.111 7.111 11 C 0.091 3.909 12 H 0.106 0.894 13 C -0.173 4.173 14 C 0.118 3.882 15 N -0.703 5.703 16 C 0.536 3.464 17 O -0.563 6.563 18 C -0.131 4.131 19 S -0.144 6.144 20 C -0.547 4.547 21 H 0.080 0.920 22 C 0.014 3.986 23 N -0.910 5.910 24 Si 0.997 3.003 25 H -0.268 1.268 26 H -0.276 1.276 27 H -0.259 1.259 28 H 0.075 0.925 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.223 0.777 34 H 0.218 0.782 35 H 0.081 0.919 36 H 0.063 0.937 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.413 0.587 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.660 -8.364 -3.965 32.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.081 4.081 3 N -0.186 5.186 4 C 0.017 3.983 5 N -0.177 5.177 6 C -0.078 4.078 7 C -0.104 4.104 8 N -0.194 5.194 9 C 0.056 3.944 10 F -0.091 7.091 11 C -0.017 4.017 12 H 0.124 0.876 13 C -0.232 4.232 14 C -0.006 4.006 15 N -0.357 5.357 16 C 0.322 3.678 17 O -0.441 6.441 18 C -0.282 4.282 19 S 0.083 5.917 20 C -0.695 4.695 21 H 0.098 0.902 22 C -0.191 4.191 23 N -0.547 5.547 24 Si 0.819 3.181 25 H -0.194 1.194 26 H -0.201 1.201 27 H -0.183 1.183 28 H 0.093 0.907 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.239 0.761 34 H 0.234 0.766 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.250 0.750 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 30.257 -8.915 -2.433 31.637 hybrid contribution -0.097 0.729 -2.056 2.184 sum 30.161 -8.186 -4.489 31.573 Atomic orbital electron populations 1.22256 0.94014 1.03252 1.03085 1.22550 0.96956 0.85133 1.03480 1.59282 1.18431 1.21661 1.19231 1.20586 0.90584 0.96441 0.90656 1.68672 0.99104 1.14955 1.35014 1.24466 0.95490 0.94375 0.93499 1.24178 0.97819 0.94745 0.93645 1.67753 0.99064 1.14281 1.38323 1.18684 0.85237 1.01558 0.88933 1.91600 1.52742 1.83502 1.81212 1.21874 0.94094 1.01077 0.84606 0.87587 1.22351 1.00582 0.99247 1.01014 1.21754 0.89010 0.96415 0.93425 1.45707 1.09073 1.53631 1.27271 1.19927 0.82595 0.79874 0.85399 1.90690 1.73789 1.51780 1.27869 1.23370 0.99134 1.03193 1.02511 1.85485 1.02829 1.68850 1.34563 1.23196 0.99143 1.37238 1.09916 0.90206 1.26106 0.96849 0.97400 0.98733 1.70174 1.09574 1.44893 1.30028 0.84970 0.77831 0.77859 0.77424 1.19352 1.20147 1.18341 0.90690 0.93043 0.91155 0.90268 0.90059 0.76106 0.76604 0.89970 0.91801 0.90234 0.90570 0.90658 0.75008 0.87670 0.87786 0.91973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.59 9.60 71.98 0.69 -2.90 16 2 C 0.04 0.76 4.97 86.30 0.43 1.19 16 3 N -0.47 -8.28 3.89 -677.20 -2.63 -10.91 16 4 C 0.25 4.36 6.03 133.09 0.80 5.16 16 5 N -0.46 -5.94 6.93 -192.41 -1.33 -7.28 16 6 C 0.08 0.54 11.21 84.58 0.95 1.49 16 7 C 0.06 0.46 11.21 84.57 0.95 1.40 16 8 N -0.47 -8.26 10.50 -195.79 -2.06 -10.31 16 9 C 0.22 4.30 7.87 84.99 0.67 4.97 16 10 F -0.11 -2.59 15.09 44.97 0.68 -1.91 16 11 C 0.09 1.44 2.10 44.91 0.09 1.54 16 12 H 0.11 1.71 7.57 -2.39 -0.02 1.69 16 13 C -0.17 -2.15 8.50 71.98 0.61 -1.54 16 14 C 0.12 2.52 4.23 86.38 0.37 2.88 16 15 N -0.70 -18.32 4.25 -463.07 -1.97 -20.28 16 16 C 0.54 19.88 7.48 87.65 0.66 20.54 16 17 O -0.56 -25.66 15.86 -3.03 -0.05 -25.71 16 18 C -0.13 -5.35 6.16 71.23 0.44 -4.91 16 19 S -0.14 -8.12 20.57 -56.49 -1.16 -9.28 16 20 C -0.55 -31.78 9.50 67.95 0.65 -31.13 16 21 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 22 C 0.01 0.80 5.49 84.86 0.47 1.27 16 23 N -0.91 -56.39 13.22 21.65 0.29 -56.10 16 24 Si 1.00 44.30 29.55 68.60 2.03 46.32 16 25 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 26 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 27 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 28 H 0.07 1.88 2.89 -2.39 -0.01 1.87 16 29 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.08 1.44 5.51 -2.39 -0.01 1.42 16 32 H 0.08 1.18 5.17 -2.39 -0.01 1.17 16 33 H 0.22 -0.55 8.06 -2.91 -0.02 -0.57 16 34 H 0.22 -0.09 8.06 -2.91 -0.02 -0.11 16 35 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.06 0.78 5.86 -2.39 -0.01 0.76 16 37 H 0.08 0.97 6.06 -2.39 -0.01 0.96 16 38 H 0.08 1.75 5.56 -2.39 -0.01 1.74 16 39 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 40 H 0.41 9.34 8.17 -92.71 -0.76 8.58 16 41 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 42 H 0.10 3.94 8.14 -2.39 -0.02 3.92 16 43 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -79.97 363.40 1.87 -78.10 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 0.31 Total: 17.43 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: 7.76 Total: -0.05 kcal Atomic # 7 Polarization: -97.18 SS G_CDS: -7.70 Total: -104.89 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -0.05 Total: -25.71 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.68 Total: -1.91 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: -8.12 SS G_CDS: -1.16 Total: -9.28 kcal Total: -79.97 1.87 -78.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089576607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.485 kcal (2) G-P(sol) polarization free energy of solvation -79.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds