Wall clock time and date at job start Wed Apr 1 2020 03:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52997 * 109.46981 * 117.65955 * 3 2 1 5 5 N 1.46501 * 109.47039 * 179.97438 * 4 3 2 6 6 C 1.46500 * 120.00219 * 275.00017 * 5 4 3 7 7 C 1.50698 * 109.47429 * 275.00296 * 6 5 4 8 8 H 1.07995 * 119.99644 * 359.97438 * 7 6 5 9 9 C 1.37874 * 119.99879 * 180.02562 * 7 6 5 10 10 N 1.31510 * 119.99950 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99757 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47127 * 89.99985 * 11 9 7 13 13 H 1.48499 * 109.47152 * 209.99731 * 11 9 7 14 14 H 1.48498 * 109.47334 * 329.99893 * 11 9 7 15 15 S 1.65608 * 119.99650 * 95.00421 * 5 4 3 16 16 O 1.42102 * 104.27363 * 206.06992 * 15 5 4 17 17 O 1.42097 * 104.27711 * 333.92606 * 15 5 4 18 18 C 1.81401 * 104.44945 * 89.99952 * 15 5 4 19 19 C 1.52998 * 109.46866 * 179.97438 * 18 15 5 20 20 H 1.08999 * 110.32542 * 307.21443 * 19 18 15 21 21 C 1.54754 * 110.35536 * 185.00055 * 19 18 15 22 22 C 1.53474 * 103.62897 * 217.36204 * 21 19 18 23 23 C 1.52641 * 115.84409 * 230.97297 * 22 21 19 24 24 C 1.53989 * 86.72928 * 217.20174 * 23 22 21 25 25 C 1.52649 * 115.82307 * 129.61174 * 22 21 19 26 26 C 1.53440 * 105.20792 * 0.31568 * 22 21 19 27 27 O 1.44512 * 110.35841 * 69.55763 * 19 18 15 28 28 H 1.09008 * 109.47009 * 357.66523 * 3 2 1 29 29 H 1.08995 * 109.47269 * 237.66610 * 3 2 1 30 30 H 1.08999 * 109.47069 * 60.00413 * 4 3 2 31 31 H 1.09000 * 109.47677 * 299.99959 * 4 3 2 32 32 H 1.08994 * 109.46638 * 35.00405 * 6 5 4 33 33 H 1.09005 * 109.46874 * 155.00013 * 6 5 4 34 34 H 0.97009 * 119.99744 * 179.97438 * 10 9 7 35 35 H 1.08996 * 109.47000 * 300.00248 * 18 15 5 36 36 H 1.09006 * 109.46904 * 59.99979 * 18 15 5 37 37 H 1.09000 * 110.59423 * 335.89696 * 21 19 18 38 38 H 1.08998 * 110.59472 * 98.82655 * 21 19 18 39 39 H 1.08995 * 113.67189 * 331.66254 * 23 22 21 40 40 H 1.09001 * 113.67087 * 102.74219 * 23 22 21 41 41 H 1.08995 * 113.58384 * 269.97286 * 24 23 22 42 42 H 1.09004 * 113.57618 * 139.18614 * 24 23 22 43 43 H 1.09002 * 113.67556 * 257.27864 * 25 22 21 44 44 H 1.09001 * 113.67177 * 28.26723 * 25 22 21 45 45 H 1.08995 * 110.42165 * 141.95329 * 26 22 21 46 46 H 1.08999 * 110.42600 * 264.31237 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.6705 -1.2776 5 7 4.5826 0.6717 -1.2774 6 6 5.3142 1.7405 -0.5927 7 6 5.4573 2.9228 -1.5162 8 1 5.0450 2.8819 -2.5135 9 6 6.1155 4.0561 -1.0882 10 7 6.6180 4.1056 0.1261 11 14 6.2935 5.5212 -2.2332 12 1 5.1325 6.4304 -2.0579 13 1 7.5465 6.2509 -1.9123 14 1 6.3431 5.0473 -3.6397 15 16 5.4117 -0.5351 -2.0511 16 8 6.6582 -0.5954 -1.3713 17 8 4.5166 -1.6386 -2.0391 18 6 5.6378 0.0828 -3.7416 19 6 6.4014 -0.9554 -4.5662 20 1 7.3221 -1.2404 -4.0572 21 6 6.7155 -0.3983 -5.9754 22 6 6.5469 -1.6175 -6.8921 23 6 7.7080 -1.9022 -7.8411 24 6 6.6453 -2.3163 -8.8758 25 6 5.6580 -1.4114 -8.1159 26 6 6.1460 -2.7691 -5.9606 27 8 5.5745 -2.1168 -4.8024 28 1 2.9718 -1.0261 0.0419 29 1 2.9711 0.5504 0.8683 30 1 2.7539 1.6972 -1.3196 31 1 2.7546 0.1207 -2.1460 32 1 4.7664 2.0413 0.3003 33 1 6.3027 1.3798 -0.3084 34 1 7.0815 4.9029 0.4270 35 1 4.6636 0.2632 -4.1958 36 1 6.2044 1.0137 -3.7154 37 1 6.0069 0.3849 -6.2448 38 1 7.7381 -0.0235 -6.0203 39 1 8.2705 -1.0124 -8.1237 40 1 8.3467 -2.7238 -7.5171 41 1 6.3866 -3.3743 -8.8357 42 1 6.8633 -1.9714 -9.8866 43 1 4.6620 -1.8417 -8.0108 44 1 5.6396 -0.3825 -8.4751 45 1 5.4051 -3.4073 -6.4420 46 1 7.0224 -3.3519 -5.6773 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364802497.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:38 Heat of formation + Delta-G solvation = -73.123304 kcal Electronic energy + Delta-G solvation = -28689.424426 eV Core-core repulsion = 24707.066506 eV Total energy + Delta-G solvation = -3982.357920 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.75913 -37.29925 -37.11140 -36.51248 -35.68878 -35.29794 -32.85255 -32.34014 -30.65816 -29.55305 -26.99798 -26.34500 -26.07847 -23.80581 -23.10685 -22.21267 -21.26349 -18.94126 -18.27604 -17.47827 -17.06883 -16.62823 -16.42311 -16.16134 -15.85422 -15.56022 -15.29734 -14.86465 -14.62419 -14.59380 -14.01836 -13.81891 -13.54331 -13.41698 -12.97536 -12.69694 -12.60313 -12.43361 -12.30608 -12.25830 -11.92145 -11.87958 -11.78181 -11.66623 -11.48299 -11.35870 -11.24998 -11.18886 -11.00906 -10.85338 -10.66007 -10.60278 -10.52912 -10.43957 -10.25536 -9.97120 -9.91542 -9.76101 -8.58569 -8.20627 -6.20555 -4.28641 0.82559 2.92771 3.02100 3.18844 3.23917 3.27295 3.30003 3.61177 4.08106 4.19214 4.25971 4.28173 4.30470 4.43359 4.52596 4.66439 4.74861 4.84583 4.98510 5.05920 5.13309 5.18250 5.25370 5.31877 5.37822 5.42221 5.45600 5.53211 5.54997 5.61620 5.67490 5.72481 5.74567 5.79198 5.83601 5.98262 6.05220 6.11039 6.23624 6.39790 6.63332 7.20998 7.31815 7.50415 7.75186 7.77729 8.03596 8.76025 9.38710 10.87152 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.008730 B = 0.004128 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3206.676365 B = 6781.888808 C = 8784.124608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C 0.223 3.777 3 C -0.052 4.052 4 C 0.139 3.861 5 N -0.985 5.985 6 C 0.240 3.760 7 C -0.551 4.551 8 H 0.063 0.937 9 C 0.068 3.932 10 N -0.885 5.885 11 Si 0.892 3.108 12 H -0.279 1.279 13 H -0.285 1.285 14 H -0.274 1.274 15 S 2.613 3.387 16 O -0.953 6.953 17 O -0.960 6.960 18 C -0.631 4.631 19 C 0.084 3.916 20 H 0.083 0.917 21 C -0.128 4.128 22 C -0.120 4.120 23 C -0.127 4.127 24 C -0.142 4.142 25 C -0.125 4.125 26 C 0.067 3.933 27 O -0.363 6.363 28 H 0.114 0.886 29 H 0.117 0.883 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.043 0.957 33 H 0.058 0.942 34 H 0.266 0.734 35 H 0.135 0.865 36 H 0.155 0.845 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.084 0.916 45 H 0.095 0.905 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.622 -10.122 -13.837 17.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.131 5.131 2 C -0.094 4.094 3 C -0.094 4.094 4 C 0.010 3.990 5 N -0.822 5.822 6 C 0.118 3.882 7 C -0.590 4.590 8 H 0.081 0.919 9 C -0.136 4.136 10 N -0.522 5.522 11 Si 0.720 3.280 12 H -0.205 1.205 13 H -0.210 1.210 14 H -0.199 1.199 15 S 2.705 3.295 16 O -0.944 6.944 17 O -0.950 6.950 18 C -0.758 4.758 19 C 0.025 3.975 20 H 0.101 0.899 21 C -0.167 4.167 22 C -0.120 4.120 23 C -0.164 4.164 24 C -0.180 4.180 25 C -0.163 4.163 26 C -0.009 4.009 27 O -0.282 6.282 28 H 0.132 0.868 29 H 0.135 0.865 30 H 0.110 0.890 31 H 0.094 0.906 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.153 0.847 36 H 0.173 0.827 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.090 0.910 41 H 0.099 0.901 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.103 0.897 45 H 0.113 0.887 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.131 -10.857 -13.176 17.073 hybrid contribution 0.678 1.717 -1.188 2.195 sum 0.809 -9.139 -14.363 17.044 Atomic orbital electron populations 1.81165 1.13098 1.09714 1.09152 1.29144 0.95135 0.92426 0.92739 1.19906 0.81225 1.05349 1.02966 1.20885 0.80801 1.02114 0.95186 1.57510 1.12812 1.44564 1.67343 1.19322 0.92694 0.83376 0.92813 1.21564 1.37201 0.99673 1.00585 0.91928 1.24934 0.95025 0.98528 0.95153 1.69921 1.36318 1.29109 1.16896 0.86599 0.77760 0.82687 0.80969 1.20515 1.21042 1.19855 1.04864 0.74354 0.73873 0.76435 1.93576 1.44543 1.86165 1.70068 1.93549 1.64702 1.50079 1.86710 1.30804 1.10423 1.09518 1.25052 1.22636 0.92988 0.85329 0.96573 0.89940 1.22844 1.03292 0.97724 0.92833 1.22537 0.98315 0.96253 0.94933 1.22843 0.95755 1.01841 0.95975 1.22910 0.96892 0.99915 0.98256 1.22836 0.98004 1.00494 0.94921 1.23109 0.98801 0.93867 0.85171 1.89310 1.52204 1.39065 1.47627 0.86821 0.86517 0.88997 0.90595 0.93884 0.92401 0.92431 0.84699 0.82691 0.89686 0.89720 0.89609 0.91049 0.90132 0.91388 0.90977 0.89742 0.88681 0.91576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.63 18.54 42.15 0.78 -6.85 16 2 C 0.22 3.27 15.43 -20.76 -0.32 2.95 16 3 C -0.05 -0.70 6.02 -29.52 -0.18 -0.88 16 4 C 0.14 2.07 5.21 -4.04 -0.02 2.05 16 5 N -0.99 -17.63 2.70 -115.67 -0.31 -17.94 16 6 C 0.24 5.29 5.41 -5.19 -0.03 5.26 16 7 C -0.55 -13.13 9.38 -34.44 -0.32 -13.46 16 8 H 0.06 1.40 7.81 -52.49 -0.41 0.99 16 9 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 10 N -0.88 -23.79 13.29 55.43 0.74 -23.05 16 11 Si 0.89 19.49 29.54 -169.99 -5.02 14.47 16 12 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 13 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 14 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 15 S 2.61 46.40 5.30 -107.50 -0.57 45.83 16 16 O -0.95 -20.10 16.53 -57.54 -0.95 -21.05 16 17 O -0.96 -17.85 16.55 -57.62 -0.95 -18.81 16 18 C -0.63 -9.26 5.80 37.16 0.22 -9.05 16 19 C 0.08 1.14 3.27 -25.81 -0.08 1.05 16 20 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 21 C -0.13 -1.40 6.15 -25.56 -0.16 -1.56 16 22 C -0.12 -1.13 1.17 -154.42 -0.18 -1.31 16 23 C -0.13 -0.96 7.30 -26.40 -0.19 -1.15 16 24 C -0.14 -0.99 7.95 -25.72 -0.20 -1.19 16 25 C -0.13 -1.04 7.22 -26.40 -0.19 -1.23 16 26 C 0.07 0.71 6.90 37.39 0.26 0.97 16 27 O -0.36 -5.23 11.06 -35.23 -0.39 -5.62 16 28 H 0.11 1.47 7.90 -51.92 -0.41 1.06 16 29 H 0.12 1.45 8.14 -51.93 -0.42 1.03 16 30 H 0.09 1.36 8.11 -51.93 -0.42 0.94 16 31 H 0.08 1.01 7.61 -51.93 -0.40 0.62 16 32 H 0.04 0.97 8.11 -51.93 -0.42 0.55 16 33 H 0.06 1.42 6.82 -51.93 -0.35 1.07 16 34 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 35 H 0.13 1.76 8.14 -51.93 -0.42 1.33 16 36 H 0.16 2.26 8.14 -51.92 -0.42 1.84 16 37 H 0.08 0.92 7.71 -51.93 -0.40 0.52 16 38 H 0.08 0.83 7.97 -51.93 -0.41 0.41 16 39 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.50 8.05 -51.93 -0.42 0.08 16 41 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.61 8.05 -51.93 -0.42 0.19 16 44 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.10 0.87 7.91 -51.93 -0.41 0.46 16 46 H 0.07 0.62 8.04 -51.93 -0.42 0.20 16 LS Contribution 395.01 15.07 5.95 5.95 Total: -1.00 -31.36 395.01 -9.64 -41.00 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -7.41 Total: 2.00 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: -1.50 Total: -15.92 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: 1.21 Total: -47.85 kcal Atomic # 8 Polarization: -43.18 SS G_CDS: -2.29 Total: -45.47 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.47 kcal Atomic # 16 Polarization: 46.40 SS G_CDS: -0.57 Total: 45.83 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.36 -9.64 -41.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364802497.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.127 kcal (2) G-P(sol) polarization free energy of solvation -31.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds