Wall clock time and date at job start Wed Apr 1 2020 02:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47318 * 2 1 4 4 C 1.53002 * 109.46954 * 239.99680 * 2 1 3 5 5 N 1.46506 * 109.47035 * 184.99888 * 4 2 1 6 6 C 1.34777 * 119.99873 * 179.97438 * 5 4 2 7 7 O 1.21284 * 119.99754 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00137 * 180.02562 * 6 5 4 9 9 H 1.08996 * 115.54919 * 34.41899 * 8 6 5 10 10 C 1.53003 * 117.50021 * 248.74936 * 8 6 5 11 11 C 1.52999 * 117.49889 * 180.08989 * 8 6 5 12 12 H 1.08998 * 117.50050 * 359.97438 * 11 8 6 13 13 C 1.50708 * 117.49764 * 214.97891 * 11 8 6 14 14 C 1.38223 * 119.95299 * 299.72339 * 13 11 8 15 15 C 1.38433 * 120.04150 * 179.76711 * 14 13 11 16 16 F 1.35099 * 120.02012 * 180.28078 * 15 14 13 17 17 C 1.38593 * 119.95309 * 0.50911 * 15 14 13 18 18 F 1.35103 * 120.04448 * 179.72823 * 17 15 14 19 19 C 1.38604 * 119.91392 * 359.74663 * 17 15 14 20 20 F 1.35097 * 120.02132 * 180.02562 * 19 17 15 21 21 C 1.38226 * 119.95239 * 119.99990 * 13 11 8 22 22 N 1.46501 * 109.47155 * 119.99995 * 2 1 3 23 23 C 1.36940 * 119.99958 * 274.99351 * 22 2 1 24 24 H 1.08000 * 119.99617 * 0.02562 * 23 22 2 25 25 C 1.38814 * 119.99883 * 179.97438 * 23 22 2 26 26 N 1.31616 * 119.99993 * 180.02562 * 25 23 22 27 27 Si 1.86797 * 120.00132 * 0.02562 * 25 23 22 28 28 H 1.48496 * 109.47488 * 89.99413 * 27 25 23 29 29 H 1.48501 * 109.47290 * 209.99850 * 27 25 23 30 30 H 1.48507 * 109.46941 * 329.99439 * 27 25 23 31 31 H 1.09001 * 109.47013 * 299.99960 * 1 2 3 32 32 H 1.08996 * 109.46904 * 59.99549 * 1 2 3 33 33 H 1.08995 * 109.47393 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.46930 * 65.00118 * 4 2 1 35 35 H 1.09000 * 109.47312 * 305.00062 * 4 2 1 36 36 H 0.96999 * 120.00080 * 0.02562 * 5 4 2 37 37 H 1.09005 * 117.49594 * 0.02562 * 10 8 6 38 38 H 1.08998 * 117.49536 * 145.01524 * 10 8 6 39 39 H 1.08001 * 119.97815 * 0.02562 * 14 13 11 40 40 H 1.07992 * 119.97752 * 0.02562 * 21 13 11 41 41 H 0.96998 * 120.00221 * 94.99749 * 22 2 1 42 42 H 0.96996 * 120.00087 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8265 -1.1906 6 6 4.1730 -1.4293 -2.1907 7 8 3.5698 -1.8844 -3.1394 8 6 5.6748 -1.5380 -2.1301 9 1 6.0965 -1.6742 -1.1343 10 6 6.4838 -0.7131 -3.1332 11 6 6.3805 -2.2315 -3.2971 12 1 5.7585 -2.6096 -4.1084 13 6 7.6059 -3.0503 -2.9818 14 6 8.7066 -2.4494 -2.4004 15 6 9.8313 -3.2007 -2.1056 16 9 10.9047 -2.6141 -1.5322 17 6 9.8571 -4.5540 -2.4034 18 9 10.9558 -5.2879 -2.1214 19 6 8.7543 -5.1536 -2.9911 20 9 8.7768 -6.4727 -3.2819 21 6 7.6295 -4.3999 -3.2796 22 7 2.0183 -0.6906 1.1962 23 6 2.1492 -0.0074 2.3757 24 1 1.8921 1.0404 2.4242 25 6 2.6115 -0.6619 3.5093 26 7 2.7368 -0.0055 4.6431 27 14 3.0556 -2.4744 3.4255 28 1 4.4883 -2.6168 3.0620 29 1 2.8155 -3.1046 4.7485 30 1 2.2158 -3.1429 2.3991 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.7516 -0.1584 -2.1370 35 1 1.6053 -1.7199 -1.2951 36 1 3.9824 -0.4628 -0.4316 37 1 5.9297 -0.0915 -3.8366 38 1 7.4379 -0.3070 -2.7972 39 1 8.6876 -1.3939 -2.1723 40 1 6.7703 -4.8664 -3.7382 41 1 2.2490 -1.6318 1.1527 42 1 3.0601 -0.4627 5.4351 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662383473.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:08:45 Heat of formation + Delta-G solvation = -108.548233 kcal Electronic energy + Delta-G solvation = -28730.707560 eV Core-core repulsion = 24069.512809 eV Total energy + Delta-G solvation = -4661.194751 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.130 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.11425 -49.55698 -48.80306 -40.51817 -39.26606 -36.99783 -36.09760 -33.72135 -31.98250 -31.13418 -30.76846 -29.47729 -26.68734 -24.74002 -24.09721 -23.58137 -23.06123 -21.35943 -20.38988 -19.88108 -18.72812 -18.33010 -17.93097 -17.77780 -17.17918 -17.09270 -16.28001 -16.02484 -15.84068 -15.69309 -15.44492 -15.26650 -15.02746 -14.71014 -14.52967 -14.42173 -13.92779 -13.44457 -13.12538 -13.01129 -12.80986 -12.63545 -12.54224 -12.33978 -12.23147 -12.14346 -11.89691 -11.70814 -11.02509 -10.98160 -10.93068 -10.84134 -10.48045 -10.16629 -9.85338 -9.70003 -9.42450 -9.11581 -9.07851 -8.87922 -7.42921 -5.88406 -3.25795 0.18456 0.28777 2.36547 2.65310 2.89981 3.21851 3.27920 3.32181 3.38195 3.51897 3.73519 3.77879 3.90420 3.96187 4.35091 4.47330 4.48027 4.50661 4.65604 4.95776 4.97971 5.08205 5.13437 5.22272 5.27634 5.32871 5.41378 5.41514 5.51983 5.62374 5.69722 5.85631 5.89901 6.01926 6.11759 6.12973 6.31821 6.57773 6.63030 6.87852 7.68351 7.86626 8.29552 8.31091 9.07577 9.79808 9.98638 11.29481 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.011005 B = 0.002728 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.695499 B =10261.716843 C =11474.848188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.165 3.835 3 H 0.063 0.937 4 C 0.112 3.888 5 N -0.709 5.709 6 C 0.539 3.461 7 O -0.551 6.551 8 C -0.171 4.171 9 H 0.131 0.869 10 C -0.138 4.138 11 C -0.093 4.093 12 H 0.138 0.862 13 C 0.001 3.999 14 C -0.138 4.138 15 C 0.105 3.895 16 F -0.118 7.118 17 C 0.026 3.974 18 F -0.118 7.118 19 C 0.104 3.896 20 F -0.118 7.118 21 C -0.125 4.125 22 N -0.748 5.748 23 C -0.248 4.248 24 H 0.092 0.908 25 C 0.009 3.991 26 N -0.930 5.930 27 Si 0.880 3.120 28 H -0.284 1.284 29 H -0.290 1.290 30 H -0.277 1.277 31 H 0.063 0.937 32 H 0.043 0.957 33 H 0.048 0.952 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.412 0.588 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.158 0.842 40 H 0.157 0.843 41 H 0.362 0.638 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.859 -4.548 -18.805 22.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.055 3.945 3 H 0.081 0.919 4 C -0.013 4.013 5 N -0.360 5.360 6 C 0.324 3.676 7 O -0.430 6.430 8 C -0.192 4.192 9 H 0.148 0.852 10 C -0.176 4.176 11 C -0.111 4.111 12 H 0.156 0.844 13 C 0.000 4.000 14 C -0.156 4.156 15 C 0.085 3.915 16 F -0.096 7.096 17 C 0.004 3.996 18 F -0.097 7.097 19 C 0.083 3.917 20 F -0.096 7.096 21 C -0.144 4.144 22 N -0.392 5.392 23 C -0.378 4.378 24 H 0.109 0.891 25 C -0.187 4.187 26 N -0.577 5.577 27 Si 0.711 3.289 28 H -0.210 1.210 29 H -0.217 1.217 30 H -0.204 1.204 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.248 0.752 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.175 0.825 40 H 0.175 0.825 41 H 0.195 0.805 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.501 -4.735 -19.236 22.907 hybrid contribution 0.931 -1.566 0.842 2.007 sum 12.432 -6.301 -18.395 23.079 Atomic orbital electron populations 1.22336 0.97761 1.01327 1.00968 1.20484 0.92894 0.96049 0.85053 0.91896 1.21782 0.79188 1.01250 0.99056 1.45953 1.08357 1.58328 1.23393 1.19460 0.87793 0.77833 0.82470 1.90678 1.69858 1.48599 1.33842 1.22441 0.92652 1.06785 0.97337 0.85154 1.23196 1.01388 0.92468 1.00500 1.21053 0.95469 0.93837 1.00752 0.84414 1.18799 0.93615 0.92422 0.95122 1.21109 0.91259 1.01901 1.01355 1.17265 0.86082 0.88910 0.99245 1.91584 1.52802 1.83521 1.81673 1.17602 0.85648 0.89214 1.07091 1.91564 1.50207 1.76256 1.91639 1.17291 0.94050 0.79185 1.01156 1.91578 1.96654 1.30439 1.90973 1.21010 0.97560 0.93514 1.02331 1.42854 1.79762 1.09463 1.07152 1.19047 1.37500 0.95531 0.85724 0.89062 1.24659 1.01267 0.97269 0.95506 1.69688 1.52133 1.35633 1.00271 0.86629 0.78410 0.86877 0.77029 1.21048 1.21674 1.20360 0.91802 0.93824 0.93310 0.91297 0.91774 0.75154 0.87054 0.87134 0.82485 0.82486 0.80517 0.92934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 9.49 37.16 0.35 -2.23 16 2 C 0.16 2.77 3.05 -67.93 -0.21 2.57 16 3 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 4 C 0.11 1.64 5.23 -4.04 -0.02 1.62 16 5 N -0.71 -9.95 5.39 -60.29 -0.32 -10.27 16 6 C 0.54 7.26 7.61 -10.99 -0.08 7.17 16 7 O -0.55 -8.94 16.26 5.55 0.09 -8.85 16 8 C -0.17 -1.68 5.82 -91.77 -0.53 -2.21 16 9 H 0.13 1.20 8.14 -51.93 -0.42 0.77 16 10 C -0.14 -0.99 9.57 -26.69 -0.26 -1.25 16 11 C -0.09 -0.76 5.56 -91.73 -0.51 -1.27 16 12 H 0.14 1.21 7.67 -51.93 -0.40 0.82 16 13 C 0.00 0.01 5.61 -104.63 -0.59 -0.58 16 14 C -0.14 -1.05 9.28 -39.52 -0.37 -1.42 16 15 C 0.11 0.99 7.31 -39.38 -0.29 0.70 16 16 F -0.12 -1.22 17.18 2.25 0.04 -1.18 16 17 C 0.03 0.26 7.31 -39.32 -0.29 -0.02 16 18 F -0.12 -1.38 17.10 2.25 0.04 -1.34 16 19 C 0.10 0.99 7.31 -39.38 -0.29 0.70 16 20 F -0.12 -1.23 17.18 2.25 0.04 -1.20 16 21 C -0.13 -1.01 9.71 -39.52 -0.38 -1.40 16 22 N -0.75 -15.78 4.37 -53.42 -0.23 -16.02 16 23 C -0.25 -6.41 10.41 -15.06 -0.16 -6.56 16 24 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 25 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 26 N -0.93 -27.82 13.97 55.49 0.78 -27.05 16 27 Si 0.88 21.01 27.74 -169.99 -4.71 16.30 16 28 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 29 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 30 H -0.28 -6.34 6.52 56.52 0.37 -5.97 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.41 5.79 8.14 -40.82 -0.33 5.46 16 37 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.11 0.56 6.17 -51.93 -0.32 0.24 16 39 H 0.16 0.89 6.01 -52.49 -0.32 0.58 16 40 H 0.16 1.04 8.06 -52.49 -0.42 0.61 16 41 H 0.36 7.72 5.66 -40.82 -0.23 7.49 16 42 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 371.81 15.07 5.60 5.60 Total: -1.00 -31.07 371.81 -7.39 -38.46 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -4.99 Total: 9.56 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -3.71 Total: -4.02 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: 0.22 Total: -53.34 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.09 Total: -8.85 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.12 Total: -3.71 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.71 Total: 16.30 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.07 -7.39 -38.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662383473.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.088 kcal (2) G-P(sol) polarization free energy of solvation -31.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds