Wall clock time and date at job start Wed Apr 1 2020 00:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86799 * 120.00427 * 2 1 4 4 H 1.48501 * 109.47169 * 264.66977 * 3 2 1 5 5 H 1.48494 * 109.46919 * 24.66638 * 3 2 1 6 6 H 1.48493 * 109.47315 * 144.66864 * 3 2 1 7 7 C 1.38812 * 119.99694 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00396 * 336.25021 * 7 2 1 9 9 N 1.36937 * 120.00040 * 156.24399 * 7 2 1 10 10 C 1.47429 * 125.65005 * 162.05411 * 9 7 2 11 11 C 1.54908 * 104.83335 * 155.90537 * 10 9 7 12 12 C 1.55166 * 101.58228 * 37.00994 * 11 10 9 13 13 H 1.08997 * 110.71961 * 83.03521 * 12 11 10 14 14 C 1.52999 * 110.71980 * 206.13501 * 12 11 10 15 15 N 1.46492 * 109.47102 * 182.55618 * 14 12 11 16 16 C 1.34781 * 120.00133 * 179.97438 * 15 14 12 17 17 O 1.21493 * 119.99742 * 0.02562 * 16 15 14 18 18 C 1.48213 * 119.99953 * 179.97438 * 16 15 14 19 19 C 1.35447 * 118.71195 * 180.02562 * 18 16 15 20 20 C 1.47085 * 118.77262 * 179.97438 * 19 18 16 21 21 O 1.21834 * 121.59421 * 179.97438 * 20 19 18 22 22 C 1.47539 * 116.80464 * 0.02562 * 20 19 18 23 23 C 1.39459 * 121.33784 * 179.97438 * 22 20 19 24 24 C 1.36731 * 119.67145 * 180.02562 * 23 22 20 25 25 C 1.38790 * 120.39519 * 359.97438 * 24 23 22 26 26 C 1.37803 * 120.75625 * 0.27236 * 25 24 23 27 27 C 1.39158 * 119.84012 * 359.45492 * 26 25 24 28 28 O 1.34096 * 118.71857 * 359.97438 * 18 16 15 29 29 C 1.47317 * 125.61483 * 342.27329 * 9 7 2 30 30 H 0.97009 * 119.99926 * 0.02562 * 1 2 3 31 31 H 1.08997 * 110.36277 * 37.06953 * 10 9 7 32 32 H 1.08997 * 110.45937 * 274.79075 * 10 9 7 33 33 H 1.08996 * 111.00618 * 278.93724 * 11 10 9 34 34 H 1.08999 * 111.03680 * 155.09541 * 11 10 9 35 35 H 1.09008 * 109.46980 * 62.55392 * 14 12 11 36 36 H 1.09000 * 109.46876 * 302.56322 * 14 12 11 37 37 H 0.97000 * 120.00087 * 0.02562 * 15 14 12 38 38 H 1.07992 * 120.61266 * 0.02562 * 19 18 16 39 39 H 1.08002 * 120.16068 * 0.04161 * 23 22 20 40 40 H 1.07998 * 119.79857 * 180.02562 * 24 23 22 41 41 H 1.08001 * 119.62109 * 180.02562 * 25 24 23 42 42 H 1.08001 * 120.08432 * 179.72988 * 26 25 24 43 43 H 1.08997 * 110.06377 * 61.68354 * 29 9 7 44 44 H 1.09001 * 109.85087 * 300.41937 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6104 1.9813 -1.3940 5 1 1.3960 2.6825 0.5843 6 1 3.4869 1.4752 0.8096 7 6 2.0101 -1.2022 0.0005 8 1 1.5387 -2.0977 0.3776 9 7 3.2925 -1.2527 -0.4772 10 6 4.2677 -2.3254 -0.2091 11 6 5.2608 -2.2644 -1.3963 12 6 5.3571 -0.7356 -1.6437 13 1 6.0753 -0.2792 -0.9625 14 6 5.7332 -0.4451 -3.0980 15 7 5.8762 1.0006 -3.2860 16 6 6.2066 1.4934 -4.4962 17 8 6.3854 0.7386 -5.4312 18 6 6.3507 2.9562 -4.6865 19 6 6.6830 3.4231 -5.9137 20 6 6.8258 4.8746 -6.1042 21 8 7.1233 5.3502 -7.1857 22 6 6.5926 5.7268 -4.9226 23 6 6.7031 7.1151 -4.9965 24 6 6.4801 7.8721 -3.8799 25 6 6.1445 7.2671 -2.6768 26 6 6.0356 5.8966 -2.5834 27 6 6.2526 5.1065 -3.7083 28 8 6.1460 3.7658 -3.6372 29 6 3.9268 -0.2415 -1.3404 30 1 -0.4850 0.8401 -0.0004 31 1 3.7683 -3.2938 -0.1817 32 1 4.7881 -2.1410 0.7307 33 1 4.8575 -2.7767 -2.2698 34 1 6.2303 -2.6768 -1.1171 35 1 4.9514 -0.8218 -3.7576 36 1 6.6765 -0.9375 -3.3345 37 1 5.7339 1.6032 -2.5393 38 1 6.8394 2.7423 -6.7373 39 1 6.9634 7.5898 -5.9310 40 1 6.5647 8.9474 -3.9349 41 1 5.9707 7.8772 -1.8027 42 1 5.7782 5.4369 -1.6406 43 1 3.9677 0.7179 -0.8247 44 1 3.3644 -0.1420 -2.2688 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028965166.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:57:47 Heat of formation + Delta-G solvation = -18.210648 kcal Electronic energy + Delta-G solvation = -29118.762428 eV Core-core repulsion = 25003.341748 eV Total energy + Delta-G solvation = -4115.420679 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.141 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.22336 -40.07887 -39.03618 -38.39833 -38.07212 -35.08765 -33.06275 -32.68831 -31.60328 -31.15606 -30.52762 -28.86414 -26.64207 -25.20115 -24.68200 -23.64911 -22.72864 -21.41996 -20.45487 -20.34584 -19.74688 -18.82130 -18.37185 -17.05349 -16.91551 -16.45782 -16.31129 -16.07404 -15.97851 -15.35344 -15.16449 -14.77288 -14.55906 -14.44364 -14.36550 -14.02260 -13.61536 -13.46434 -13.28699 -12.97566 -12.80144 -12.59625 -12.56451 -12.10042 -11.70395 -11.67538 -11.41400 -11.07720 -10.91273 -10.65518 -10.56556 -10.31723 -10.14562 -10.12928 -9.95626 -9.63959 -9.44052 -9.30692 -8.81335 -8.69404 -7.13716 -6.00836 -3.29478 -0.08134 0.30307 0.92288 1.67629 2.22076 2.66938 2.72105 3.24732 3.34938 3.36782 3.42323 3.53828 3.95512 4.12690 4.40848 4.47466 4.54984 4.68451 4.71408 4.79913 4.85379 4.90356 4.95619 5.07298 5.14670 5.35733 5.36983 5.49349 5.50531 5.51081 5.65547 5.72512 5.78590 5.89633 5.90543 5.95399 6.06303 6.13677 6.16911 6.34507 6.50909 6.63314 6.68374 6.71305 7.10163 7.15195 7.64150 7.68218 8.25453 8.77244 9.62825 10.11102 11.15715 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.011919 B = 0.003279 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.656949 B = 8537.932340 C =10161.304526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.021 3.979 3 Si 0.885 3.115 4 H -0.286 1.286 5 H -0.304 1.304 6 H -0.280 1.280 7 C -0.244 4.244 8 H 0.094 0.906 9 N -0.610 5.610 10 C 0.132 3.868 11 C -0.121 4.121 12 C -0.118 4.118 13 H 0.082 0.918 14 C 0.128 3.872 15 N -0.704 5.704 16 C 0.573 3.427 17 O -0.504 6.504 18 C 0.104 3.896 19 C -0.236 4.236 20 C 0.422 3.578 21 O -0.453 6.453 22 C -0.228 4.228 23 C -0.029 4.029 24 C -0.151 4.151 25 C -0.052 4.052 26 C -0.141 4.141 27 C 0.158 3.842 28 O -0.223 6.223 29 C 0.123 3.877 30 H 0.263 0.737 31 H 0.051 0.949 32 H 0.025 0.975 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.411 0.589 38 H 0.176 0.824 39 H 0.142 0.858 40 H 0.137 0.863 41 H 0.143 0.857 42 H 0.148 0.852 43 H 0.024 0.976 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.879 11.939 -5.751 21.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.178 4.178 3 Si 0.717 3.283 4 H -0.213 1.213 5 H -0.232 1.232 6 H -0.207 1.207 7 C -0.371 4.371 8 H 0.111 0.889 9 N -0.337 5.337 10 C 0.007 3.993 11 C -0.159 4.159 12 C -0.137 4.137 13 H 0.101 0.899 14 C 0.005 3.995 15 N -0.354 5.354 16 C 0.356 3.644 17 O -0.381 6.381 18 C 0.053 3.947 19 C -0.258 4.258 20 C 0.305 3.695 21 O -0.332 6.332 22 C -0.230 4.230 23 C -0.047 4.047 24 C -0.169 4.169 25 C -0.070 4.070 26 C -0.159 4.159 27 C 0.113 3.887 28 O -0.128 6.128 29 C -0.002 4.002 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.043 0.957 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.246 0.754 38 H 0.193 0.807 39 H 0.160 0.840 40 H 0.154 0.846 41 H 0.160 0.840 42 H 0.166 0.834 43 H 0.042 0.958 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 16.831 11.583 -6.709 21.505 hybrid contribution 0.273 1.434 0.415 1.517 sum 17.104 13.017 -6.294 22.396 Atomic orbital electron populations 1.69858 1.05535 1.26586 1.52901 1.24963 0.95140 0.97363 1.00302 0.86910 0.78941 0.84954 0.77496 1.21329 1.23182 1.20669 1.18677 0.85204 0.95690 1.37480 0.88883 1.44854 1.10903 1.22186 1.55731 1.21617 0.90124 0.93138 0.94440 1.22734 0.99624 0.93491 1.00092 1.22484 0.98460 0.98363 0.94389 0.89917 1.21631 1.02320 0.78446 0.97096 1.46042 1.68196 1.10024 1.11171 1.17478 0.78612 0.84357 0.83972 1.90875 1.50524 1.56057 1.40614 1.22076 0.96347 0.89742 0.86487 1.24189 1.06126 0.97694 0.97743 1.19860 0.74501 0.87859 0.87263 1.90707 1.37874 1.77510 1.27140 1.20714 1.11299 0.96357 0.94637 1.20871 0.93236 0.91084 0.99541 1.21016 1.02373 1.00905 0.92601 1.21271 0.93973 0.93290 0.98436 1.20643 1.04941 0.93018 0.97304 1.19332 0.95744 0.79242 0.94370 1.82839 1.76264 1.16655 1.37080 1.21779 0.90628 0.92899 0.94874 0.92688 0.93056 0.95710 0.90764 0.91087 0.90122 0.90474 0.75354 0.80679 0.84016 0.84550 0.83964 0.83432 0.95847 0.93900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.57 13.97 55.49 0.78 -26.79 16 2 C 0.02 0.60 5.43 -17.43 -0.09 0.51 16 3 Si 0.89 21.84 24.39 -169.99 -4.15 17.70 16 4 H -0.29 -6.72 6.84 56.52 0.39 -6.33 16 5 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 6 H -0.28 -6.71 6.87 56.52 0.39 -6.32 16 7 C -0.24 -6.76 10.56 -15.06 -0.16 -6.92 16 8 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 9 N -0.61 -14.12 3.22 -169.83 -0.55 -14.67 16 10 C 0.13 2.41 7.23 -2.53 -0.02 2.39 16 11 C -0.12 -1.68 6.54 -24.58 -0.16 -1.84 16 12 C -0.12 -1.70 2.98 -88.78 -0.26 -1.97 16 13 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 14 C 0.13 1.65 5.00 -4.05 -0.02 1.63 16 15 N -0.70 -8.97 5.42 -61.14 -0.33 -9.31 16 16 C 0.57 7.68 7.80 -12.16 -0.09 7.59 16 17 O -0.50 -7.87 16.18 5.37 0.09 -7.78 16 18 C 0.10 1.27 6.89 -36.48 -0.25 1.02 16 19 C -0.24 -2.91 9.76 -36.99 -0.36 -3.27 16 20 C 0.42 5.45 7.18 -32.20 -0.23 5.22 16 21 O -0.45 -6.75 17.42 5.07 0.09 -6.66 16 22 C -0.23 -2.56 5.89 -104.78 -0.62 -3.18 16 23 C -0.03 -0.26 9.62 -39.67 -0.38 -0.65 16 24 C -0.15 -1.03 9.98 -39.92 -0.40 -1.43 16 25 C -0.05 -0.35 10.01 -39.54 -0.40 -0.74 16 26 C -0.14 -1.21 10.01 -39.40 -0.39 -1.61 16 27 C 0.16 1.71 6.78 -38.37 -0.26 1.45 16 28 O -0.22 -2.58 8.88 5.21 0.05 -2.53 16 29 C 0.12 2.48 4.55 -2.90 -0.01 2.46 16 30 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 1.02 8.05 -51.93 -0.42 0.60 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.08 1.14 8.01 -51.92 -0.42 0.72 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.41 4.90 7.75 -40.82 -0.32 4.59 16 38 H 0.18 2.10 7.49 -52.49 -0.39 1.71 16 39 H 0.14 1.16 7.81 -52.49 -0.41 0.75 16 40 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 41 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 42 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 43 H 0.02 0.51 3.55 -51.93 -0.18 0.33 16 44 H 0.04 0.93 7.73 -51.93 -0.40 0.53 16 LS Contribution 368.14 15.07 5.55 5.55 Total: -1.00 -33.90 368.14 -8.10 -42.00 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -5.51 Total: 1.85 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -4.12 Total: 0.66 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: -0.10 Total: -50.77 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: 0.22 Total: -16.98 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.15 Total: 17.70 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.90 -8.10 -42.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028965166.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.789 kcal (2) G-P(sol) polarization free energy of solvation -33.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds