Wall clock time and date at job start Wed Apr 1 2020 00:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38165 * 120.03006 * 2 1 4 4 C 1.38246 * 120.05555 * 180.29664 * 3 2 1 5 5 C 1.38283 * 120.11125 * 359.68684 * 4 3 2 6 6 C 1.38119 * 120.06045 * 359.97438 * 5 4 3 7 7 C 1.38714 * 120.03021 * 179.68470 * 2 1 3 8 8 O 1.35909 * 120.05150 * 359.97438 * 7 2 1 9 9 C 1.42901 * 116.99681 * 184.96224 * 8 7 2 10 10 C 1.53003 * 109.46862 * 175.20493 * 9 8 7 11 11 N 1.46497 * 109.46970 * 65.02830 * 10 9 8 12 12 C 1.46508 * 119.99583 * 275.20229 * 11 10 9 13 13 S 1.65593 * 120.00307 * 95.20068 * 11 10 9 14 14 O 1.42101 * 106.40422 * 208.75891 * 13 11 10 15 15 O 1.42095 * 106.40281 * 341.68446 * 13 11 10 16 16 N 1.65608 * 107.21762 * 95.22521 * 13 11 10 17 17 C 1.46492 * 119.99984 * 95.37410 * 16 13 11 18 18 C 1.46504 * 119.99448 * 275.37837 * 16 13 11 19 19 C 1.50697 * 109.47213 * 95.78742 * 18 16 13 20 20 H 1.07996 * 119.99987 * 4.90510 * 19 18 16 21 21 C 1.37879 * 119.99837 * 184.90391 * 19 18 16 22 22 N 1.31519 * 119.99950 * 5.11591 * 21 19 18 23 23 Si 1.86801 * 120.00049 * 185.11159 * 21 19 18 24 24 H 1.48499 * 109.46965 * 94.99386 * 23 21 19 25 25 H 1.48490 * 109.47068 * 214.99500 * 23 21 19 26 26 H 1.48502 * 109.46905 * 334.99584 * 23 21 19 27 27 H 1.09004 * 109.46959 * 265.11228 * 1 2 3 28 28 H 1.08998 * 109.47139 * 25.10787 * 1 2 3 29 29 H 1.08996 * 109.46950 * 145.11404 * 1 2 3 30 30 H 1.07999 * 119.97121 * 0.02562 * 3 2 1 31 31 H 1.08007 * 119.94385 * 179.69917 * 4 3 2 32 32 H 1.08001 * 119.96911 * 180.02562 * 5 4 3 33 33 H 1.07991 * 120.03512 * 180.02562 * 6 5 4 34 34 H 1.08998 * 109.47603 * 295.20881 * 9 8 7 35 35 H 1.09006 * 109.46899 * 55.20925 * 9 8 7 36 36 H 1.08999 * 109.46837 * 185.02444 * 10 9 8 37 37 H 1.08995 * 109.47388 * 305.02568 * 10 9 8 38 38 H 1.08994 * 109.47075 * 90.00275 * 12 11 10 39 39 H 1.08997 * 109.46619 * 209.99772 * 12 11 10 40 40 H 1.08998 * 109.46991 * 330.00114 * 12 11 10 41 41 H 1.09001 * 109.47065 * 90.00083 * 17 16 13 42 42 H 1.09003 * 109.47018 * 210.00077 * 17 16 13 43 43 H 1.09002 * 109.47435 * 329.99755 * 17 16 13 44 44 H 1.09006 * 109.46504 * 215.78820 * 18 16 13 45 45 H 1.09000 * 109.47504 * 335.78013 * 18 16 13 46 46 H 0.96997 * 119.99765 * 184.99899 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5809 1.1968 -0.0062 5 6 4.2752 0.0009 -0.0059 6 6 3.5887 -1.1976 0.0012 7 6 2.2012 -1.2009 0.0066 8 8 1.5233 -2.3789 0.0136 9 6 2.2993 -3.5731 0.1303 10 6 1.3649 -4.7797 0.2406 11 7 0.6105 -4.9286 -1.0064 12 6 -0.6225 -4.1645 -1.2122 13 16 1.1513 -5.9604 -2.1832 14 8 0.6934 -5.4331 -3.4207 15 8 2.5225 -6.2056 -1.9026 16 7 0.3652 -7.4023 -1.9700 17 6 -0.8487 -7.6951 -2.7360 18 6 0.8839 -8.3851 -1.0152 19 6 0.1687 -8.2313 0.3023 20 1 -0.6492 -7.5321 0.3944 21 6 0.5586 -8.9833 1.3902 22 7 1.6168 -9.7600 1.3075 23 14 -0.4160 -8.8990 2.9816 24 1 -1.4034 -10.0076 3.0166 25 1 0.5095 -9.0239 4.1360 26 1 -1.1289 -7.5985 3.0571 27 1 -0.3633 -0.0876 1.0240 28 1 -0.3633 0.9305 -0.4361 29 1 -0.3633 -0.8430 -0.5878 30 1 1.6585 2.1315 0.0004 31 1 4.1196 2.1329 -0.0111 32 1 5.3552 0.0041 -0.0103 33 1 4.1313 -2.1313 0.0019 34 1 2.9321 -3.6829 -0.7504 35 1 2.9241 -3.5148 1.0216 36 1 1.9532 -5.6797 0.4189 37 1 0.6722 -4.6284 1.0684 38 1 -0.3846 -3.2109 -1.6834 39 1 -1.2969 -4.7295 -1.8556 40 1 -1.1033 -3.9847 -0.2506 41 1 -0.5790 -8.1888 -3.6695 42 1 -1.4972 -8.3492 -2.1531 43 1 -1.3732 -6.7650 -2.9551 44 1 0.7190 -9.3904 -1.4030 45 1 1.9518 -8.2223 -0.8701 46 1 1.8492 -10.3433 2.0468 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028084009.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:14 Heat of formation + Delta-G solvation = -87.321363 kcal Electronic energy + Delta-G solvation = -29035.816784 eV Core-core repulsion = 25052.843191 eV Total energy + Delta-G solvation = -3982.973594 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.23100 -37.72805 -36.71439 -35.71068 -35.48881 -35.22861 -32.89447 -32.54340 -30.46289 -29.41820 -27.83164 -26.83679 -25.73004 -25.08071 -23.34116 -22.29095 -21.73248 -21.25023 -18.50576 -18.02171 -17.10382 -16.91670 -16.41277 -16.26818 -15.99807 -15.67469 -15.41462 -14.74115 -14.55127 -14.19457 -14.02260 -13.58477 -13.41008 -13.27056 -13.21456 -13.04583 -12.61500 -12.39579 -12.32563 -12.28619 -12.11291 -12.08774 -11.71928 -11.68188 -11.41923 -11.26398 -11.24369 -11.19596 -11.15920 -10.85258 -10.78507 -10.65140 -10.53364 -10.14251 -9.83733 -8.91535 -8.76308 -8.53886 -8.13060 -8.06252 -6.17451 -4.24543 1.22970 1.23993 1.38757 3.20261 3.24147 3.28948 3.29843 3.47270 3.68582 4.08720 4.31388 4.70507 4.73763 4.87932 4.95461 5.02063 5.12591 5.15542 5.18427 5.27596 5.37698 5.40779 5.50317 5.58145 5.60472 5.64502 5.75995 5.79343 5.85813 6.03840 6.07227 6.12404 6.15353 6.24533 6.29520 6.35732 6.39633 6.44908 6.51858 6.75499 6.87702 7.27613 7.38533 7.45162 7.58923 7.80151 8.09076 8.81907 9.41886 10.90038 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.012861 B = 0.003572 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.654893 B = 7837.534043 C = 8679.962514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.122 4.122 3 C -0.086 4.086 4 C -0.162 4.162 5 C -0.086 4.086 6 C -0.208 4.208 7 C 0.134 3.866 8 O -0.303 6.303 9 C 0.038 3.962 10 C 0.135 3.865 11 N -1.000 6.000 12 C 0.108 3.892 13 S 2.785 3.215 14 O -0.997 6.997 15 O -0.979 6.979 16 N -0.998 5.998 17 C 0.105 3.895 18 C 0.243 3.757 19 C -0.540 4.540 20 H 0.064 0.936 21 C 0.065 3.935 22 N -0.888 5.888 23 Si 0.892 3.108 24 H -0.281 1.281 25 H -0.285 1.285 26 H -0.273 1.273 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.125 0.875 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.129 0.871 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.118 0.882 37 H 0.087 0.913 38 H 0.053 0.947 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.043 0.957 42 H 0.073 0.927 43 H 0.054 0.946 44 H 0.034 0.966 45 H 0.054 0.946 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.111 16.986 -1.603 17.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.122 4.122 3 C -0.104 4.104 4 C -0.180 4.180 5 C -0.104 4.104 6 C -0.226 4.226 7 C 0.088 3.912 8 O -0.216 6.216 9 C -0.039 4.039 10 C 0.009 3.991 11 N -0.838 5.838 12 C -0.037 4.037 13 S 2.794 3.206 14 O -0.981 6.981 15 O -0.963 6.963 16 N -0.840 5.840 17 C -0.042 4.042 18 C 0.120 3.880 19 C -0.579 4.579 20 H 0.082 0.918 21 C -0.138 4.138 22 N -0.526 5.526 23 Si 0.719 3.281 24 H -0.207 1.207 25 H -0.211 1.211 26 H -0.197 1.197 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.143 0.857 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.147 0.853 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.136 0.864 37 H 0.106 0.894 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.062 0.938 42 H 0.092 0.908 43 H 0.073 0.927 44 H 0.052 0.948 45 H 0.072 0.928 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.551 17.036 -2.165 17.181 hybrid contribution -0.515 -0.315 1.335 1.465 sum -1.067 16.721 -0.830 16.775 Atomic orbital electron populations 1.20599 0.90533 1.02559 1.02340 1.19291 0.96579 0.90406 1.05964 1.20856 0.94118 0.96657 0.98810 1.20990 0.94237 0.97933 1.04860 1.20922 0.99716 0.91916 0.97891 1.21352 0.93256 0.99660 1.08360 1.18940 0.90437 0.86148 0.95660 1.86117 1.35961 1.12123 1.87433 1.23587 0.95129 0.83265 1.01929 1.21327 0.94702 0.96153 0.86933 1.57778 1.35425 1.58229 1.32392 1.21303 0.85026 0.95639 1.01782 1.01851 0.73609 0.72491 0.72698 1.93533 1.82984 1.79459 1.42128 1.93562 1.32177 1.85172 1.85427 1.57694 1.39018 1.33687 1.53584 1.21247 0.87173 1.00831 0.94923 1.19237 0.95641 0.87293 0.85780 1.21586 1.17301 1.24411 0.94603 0.91816 1.24961 0.94415 0.95852 0.98589 1.69949 1.24069 1.25338 1.33238 0.86590 0.79878 0.78553 0.83078 1.20666 1.21130 1.19723 0.91507 0.92013 0.90938 0.85721 0.86214 0.86018 0.85266 0.91540 0.90882 0.86426 0.89438 0.92850 0.92188 0.91338 0.93806 0.90813 0.92739 0.94831 0.92785 0.92519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.06 9.73 36.00 0.35 -0.71 16 2 C -0.12 -1.47 5.89 -104.47 -0.62 -2.08 16 3 C -0.09 -0.90 9.68 -39.61 -0.38 -1.28 16 4 C -0.16 -1.63 10.04 -39.56 -0.40 -2.03 16 5 C -0.09 -0.94 10.04 -39.61 -0.40 -1.34 16 6 C -0.21 -2.61 9.03 -39.43 -0.36 -2.97 16 7 C 0.13 1.82 6.65 -39.21 -0.26 1.56 16 8 O -0.30 -4.33 8.48 -19.45 -0.16 -4.50 16 9 C 0.04 0.54 5.09 37.16 0.19 0.73 16 10 C 0.14 2.17 5.83 -4.04 -0.02 2.14 16 11 N -1.00 -17.03 3.23 -121.76 -0.39 -17.42 16 12 C 0.11 1.55 9.67 59.85 0.58 2.13 16 13 S 2.79 55.78 5.98 -107.50 -0.64 55.13 16 14 O -1.00 -20.81 16.29 -57.17 -0.93 -21.74 16 15 O -0.98 -22.03 15.60 -57.17 -0.89 -22.92 16 16 N -1.00 -20.48 3.23 -123.05 -0.40 -20.88 16 17 C 0.10 1.80 10.32 59.84 0.62 2.42 16 18 C 0.24 5.85 5.44 -5.19 -0.03 5.82 16 19 C -0.54 -13.50 9.37 -34.44 -0.32 -13.83 16 20 H 0.06 1.55 7.82 -52.49 -0.41 1.14 16 21 C 0.07 1.69 5.45 -17.82 -0.10 1.59 16 22 N -0.89 -24.49 13.28 55.43 0.74 -23.76 16 23 Si 0.89 19.91 29.54 -169.99 -5.02 14.89 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.51 8.05 -51.93 -0.42 0.10 16 29 H 0.07 0.80 7.70 -51.93 -0.40 0.40 16 30 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 31 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 32 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 33 H 0.13 1.53 6.33 -52.49 -0.33 1.20 16 34 H 0.07 1.00 7.72 -51.93 -0.40 0.60 16 35 H 0.07 0.90 7.62 -51.93 -0.40 0.51 16 36 H 0.12 2.11 7.46 -51.93 -0.39 1.72 16 37 H 0.09 1.29 7.97 -51.93 -0.41 0.87 16 38 H 0.05 0.73 8.04 -51.93 -0.42 0.31 16 39 H 0.06 0.82 7.60 -51.93 -0.39 0.42 16 40 H 0.07 0.87 7.94 -51.93 -0.41 0.45 16 41 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 43 H 0.05 0.83 7.33 -51.93 -0.38 0.45 16 44 H 0.03 0.84 8.11 -51.93 -0.42 0.42 16 45 H 0.05 1.43 6.97 -51.93 -0.36 1.07 16 46 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 LS Contribution 392.69 15.07 5.92 5.92 Total: -1.00 -31.13 392.69 -10.15 -41.28 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -7.21 Total: 1.84 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -1.15 Total: -7.84 kcal Atomic # 7 Polarization: -62.00 SS G_CDS: -0.05 Total: -62.06 kcal Atomic # 8 Polarization: -47.17 SS G_CDS: -1.99 Total: -49.16 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Atomic # 16 Polarization: 55.78 SS G_CDS: -0.64 Total: 55.13 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.13 -10.15 -41.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028084009.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.041 kcal (2) G-P(sol) polarization free energy of solvation -31.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds