Wall clock time and date at job start Wed Apr 1 2020 00:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38165 * 120.03006 * 2 1 4 4 C 1.38246 * 120.05555 * 180.29664 * 3 2 1 5 5 C 1.38283 * 120.11125 * 359.68684 * 4 3 2 6 6 C 1.38119 * 120.06045 * 359.97438 * 5 4 3 7 7 C 1.38714 * 120.03021 * 179.68470 * 2 1 3 8 8 O 1.35909 * 120.05150 * 359.97438 * 7 2 1 9 9 C 1.42901 * 116.99681 * 184.96224 * 8 7 2 10 10 C 1.53003 * 109.46862 * 175.20493 * 9 8 7 11 11 N 1.46497 * 109.46970 * 65.02830 * 10 9 8 12 12 C 1.46508 * 119.99583 * 275.20229 * 11 10 9 13 13 S 1.65593 * 120.00307 * 95.20068 * 11 10 9 14 14 O 1.42101 * 106.40422 * 208.75891 * 13 11 10 15 15 O 1.42095 * 106.40281 * 341.68446 * 13 11 10 16 16 N 1.65608 * 107.21762 * 95.22521 * 13 11 10 17 17 C 1.46492 * 119.99984 * 95.37410 * 16 13 11 18 18 C 1.46504 * 119.99448 * 275.37837 * 16 13 11 19 19 C 1.50697 * 109.47213 * 95.78742 * 18 16 13 20 20 H 1.07996 * 119.99987 * 4.90510 * 19 18 16 21 21 C 1.37879 * 119.99837 * 184.90391 * 19 18 16 22 22 N 1.31519 * 119.99950 * 5.11591 * 21 19 18 23 23 Si 1.86801 * 120.00049 * 185.11159 * 21 19 18 24 24 H 1.48499 * 109.46965 * 94.99386 * 23 21 19 25 25 H 1.48490 * 109.47068 * 214.99500 * 23 21 19 26 26 H 1.48502 * 109.46905 * 334.99584 * 23 21 19 27 27 H 1.09004 * 109.46959 * 265.11228 * 1 2 3 28 28 H 1.08998 * 109.47139 * 25.10787 * 1 2 3 29 29 H 1.08996 * 109.46950 * 145.11404 * 1 2 3 30 30 H 1.07999 * 119.97121 * 0.02562 * 3 2 1 31 31 H 1.08007 * 119.94385 * 179.69917 * 4 3 2 32 32 H 1.08001 * 119.96911 * 180.02562 * 5 4 3 33 33 H 1.07991 * 120.03512 * 180.02562 * 6 5 4 34 34 H 1.08998 * 109.47603 * 295.20881 * 9 8 7 35 35 H 1.09006 * 109.46899 * 55.20925 * 9 8 7 36 36 H 1.08999 * 109.46837 * 185.02444 * 10 9 8 37 37 H 1.08995 * 109.47388 * 305.02568 * 10 9 8 38 38 H 1.08994 * 109.47075 * 90.00275 * 12 11 10 39 39 H 1.08997 * 109.46619 * 209.99772 * 12 11 10 40 40 H 1.08998 * 109.46991 * 330.00114 * 12 11 10 41 41 H 1.09001 * 109.47065 * 90.00083 * 17 16 13 42 42 H 1.09003 * 109.47018 * 210.00077 * 17 16 13 43 43 H 1.09002 * 109.47435 * 329.99755 * 17 16 13 44 44 H 1.09006 * 109.46504 * 215.78820 * 18 16 13 45 45 H 1.09000 * 109.47504 * 335.78013 * 18 16 13 46 46 H 0.96997 * 119.99765 * 184.99899 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5809 1.1968 -0.0062 5 6 4.2752 0.0009 -0.0059 6 6 3.5887 -1.1976 0.0012 7 6 2.2012 -1.2009 0.0066 8 8 1.5233 -2.3789 0.0136 9 6 2.2993 -3.5731 0.1303 10 6 1.3649 -4.7797 0.2406 11 7 0.6105 -4.9286 -1.0064 12 6 -0.6225 -4.1645 -1.2122 13 16 1.1513 -5.9604 -2.1832 14 8 0.6934 -5.4331 -3.4207 15 8 2.5225 -6.2056 -1.9026 16 7 0.3652 -7.4023 -1.9700 17 6 -0.8487 -7.6951 -2.7360 18 6 0.8839 -8.3851 -1.0152 19 6 0.1687 -8.2313 0.3023 20 1 -0.6492 -7.5321 0.3944 21 6 0.5586 -8.9833 1.3902 22 7 1.6168 -9.7600 1.3075 23 14 -0.4160 -8.8990 2.9816 24 1 -1.4034 -10.0076 3.0166 25 1 0.5095 -9.0239 4.1360 26 1 -1.1289 -7.5985 3.0571 27 1 -0.3633 -0.0876 1.0240 28 1 -0.3633 0.9305 -0.4361 29 1 -0.3633 -0.8430 -0.5878 30 1 1.6585 2.1315 0.0004 31 1 4.1196 2.1329 -0.0111 32 1 5.3552 0.0041 -0.0103 33 1 4.1313 -2.1313 0.0019 34 1 2.9321 -3.6829 -0.7504 35 1 2.9241 -3.5148 1.0216 36 1 1.9532 -5.6797 0.4189 37 1 0.6722 -4.6284 1.0684 38 1 -0.3846 -3.2109 -1.6834 39 1 -1.2969 -4.7295 -1.8556 40 1 -1.1033 -3.9847 -0.2506 41 1 -0.5790 -8.1888 -3.6695 42 1 -1.4972 -8.3492 -2.1531 43 1 -1.3732 -6.7650 -2.9551 44 1 0.7190 -9.3904 -1.4030 45 1 1.9518 -8.2223 -0.8701 46 1 1.8492 -10.3433 2.0468 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000028084009.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:13 Heat of formation + Delta-G solvation = -106.553398 kcal Electronic energy + Delta-G solvation = -29036.650748 eV Core-core repulsion = 25052.843191 eV Total energy + Delta-G solvation = -3983.807557 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.16910 -38.74282 -38.36666 -37.23332 -36.96518 -36.86433 -34.47229 -33.72645 -31.49614 -30.43807 -29.64323 -27.67267 -26.99157 -26.65668 -24.52415 -24.09478 -22.68203 -22.19452 -19.94786 -19.19127 -18.68452 -18.49282 -18.18402 -17.59729 -17.12225 -16.80716 -16.49477 -16.37883 -15.61667 -15.45462 -15.17444 -15.09018 -14.88258 -14.36345 -14.22548 -14.04911 -14.01221 -13.91736 -13.90715 -13.52286 -13.37535 -13.13132 -13.05898 -13.00225 -12.98859 -12.90583 -12.58311 -12.53791 -12.42301 -12.34862 -12.19616 -11.95900 -11.83044 -11.69617 -11.65074 -10.56838 -10.08276 -9.75935 -9.74304 -9.04080 -8.15488 -6.29285 -0.35155 0.39009 0.51349 1.45213 1.47358 1.56982 1.93030 2.23611 2.44062 2.52278 2.83200 3.15585 3.34453 3.70984 3.80972 3.88654 4.02297 4.09292 4.20822 4.23291 4.27162 4.38367 4.43942 4.56552 4.66816 4.70262 4.72070 4.80238 4.80859 4.85709 4.87567 4.98980 5.02377 5.04687 5.09985 5.27279 5.36454 5.44565 5.44990 5.55321 5.59591 5.61776 5.76582 5.91687 5.95134 6.11225 6.46237 6.83690 7.41141 8.92537 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.012861 B = 0.003572 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.654893 B = 7837.534043 C = 8679.962514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.135 4.135 3 C -0.088 4.088 4 C -0.160 4.160 5 C -0.095 4.095 6 C -0.226 4.226 7 C 0.104 3.896 8 O -0.309 6.309 9 C 0.045 3.955 10 C 0.134 3.866 11 N -0.998 5.998 12 C 0.102 3.898 13 S 2.795 3.205 14 O -1.005 7.005 15 O -1.011 7.011 16 N -1.004 6.004 17 C 0.096 3.904 18 C 0.256 3.744 19 C -0.537 4.537 20 H 0.073 0.927 21 C 0.015 3.985 22 N -0.928 5.928 23 Si 0.957 3.043 24 H -0.278 1.278 25 H -0.288 1.288 26 H -0.258 1.258 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.060 0.940 30 H 0.153 0.847 31 H 0.148 0.852 32 H 0.141 0.859 33 H 0.126 0.874 34 H 0.051 0.949 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.088 0.912 41 H 0.054 0.946 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.017 0.983 45 H 0.023 0.977 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.624 19.490 -0.850 19.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.136 4.136 3 C -0.106 4.106 4 C -0.178 4.178 5 C -0.113 4.113 6 C -0.244 4.244 7 C 0.058 3.942 8 O -0.223 6.223 9 C -0.032 4.032 10 C 0.008 3.992 11 N -0.838 5.838 12 C -0.043 4.043 13 S 2.803 3.197 14 O -0.989 6.989 15 O -0.995 6.995 16 N -0.845 5.845 17 C -0.050 4.050 18 C 0.133 3.867 19 C -0.576 4.576 20 H 0.091 0.909 21 C -0.185 4.185 22 N -0.568 5.568 23 Si 0.782 3.218 24 H -0.204 1.204 25 H -0.214 1.214 26 H -0.182 1.182 27 H 0.089 0.911 28 H 0.100 0.900 29 H 0.079 0.921 30 H 0.171 0.829 31 H 0.166 0.834 32 H 0.159 0.841 33 H 0.144 0.856 34 H 0.070 0.930 35 H 0.107 0.893 36 H 0.111 0.889 37 H 0.122 0.878 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.107 0.893 41 H 0.073 0.927 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.036 0.964 45 H 0.041 0.959 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.087 19.559 -1.439 19.722 hybrid contribution -0.016 -0.977 1.041 1.428 sum -2.103 18.582 -0.398 18.704 Atomic orbital electron populations 1.20613 0.89500 1.03133 1.02561 1.19641 0.97627 0.90427 1.05877 1.21243 0.94527 0.97144 0.97655 1.21392 0.94452 0.98729 1.03183 1.21239 1.00897 0.91688 0.97444 1.21506 0.93275 1.00448 1.09207 1.19258 0.91073 0.86246 0.97586 1.86063 1.35983 1.12230 1.88037 1.23386 0.94603 0.83183 1.02045 1.21339 0.95001 0.95952 0.86926 1.57565 1.36520 1.57668 1.32036 1.21533 0.83957 0.95537 1.03234 1.01384 0.72888 0.72531 0.72856 1.93513 1.82975 1.79495 1.42944 1.93515 1.34443 1.85688 1.85894 1.57620 1.40142 1.33383 1.53394 1.21497 0.86115 1.02327 0.95029 1.18825 0.94065 0.87284 0.86551 1.21809 1.17038 1.24042 0.94749 0.90879 1.25773 0.95220 0.95563 1.01923 1.70079 1.25797 1.26505 1.34369 0.85553 0.78343 0.79083 0.78801 1.20400 1.21429 1.18171 0.91093 0.89983 0.92119 0.82939 0.83404 0.84090 0.85636 0.93044 0.89269 0.88887 0.87779 0.92351 0.91358 0.89334 0.92687 0.90374 0.90483 0.96446 0.95921 0.92551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.89 9.73 71.24 0.69 -1.19 16 2 C -0.14 -3.04 5.89 -19.77 -0.12 -3.16 16 3 C -0.09 -1.59 9.68 22.25 0.22 -1.38 16 4 C -0.16 -2.79 10.04 22.28 0.22 -2.57 16 5 C -0.09 -1.92 10.04 22.25 0.22 -1.69 16 6 C -0.23 -5.62 9.03 22.37 0.20 -5.42 16 7 C 0.10 2.76 6.65 22.51 0.15 2.91 16 8 O -0.31 -8.75 8.48 -92.52 -0.78 -9.54 16 9 C 0.04 1.31 5.09 71.98 0.37 1.67 16 10 C 0.13 4.31 5.83 86.38 0.50 4.81 16 11 N -1.00 -33.58 3.23 -539.13 -1.74 -35.32 16 12 C 0.10 2.75 9.67 127.77 1.23 3.99 16 13 S 2.79 112.99 5.98 -56.49 -0.34 112.65 16 14 O -1.01 -41.53 16.29 -128.00 -2.09 -43.62 16 15 O -1.01 -47.30 15.60 -128.00 -2.00 -49.30 16 16 N -1.00 -41.37 3.23 -543.22 -1.75 -43.12 16 17 C 0.10 3.18 10.32 127.77 1.32 4.50 16 18 C 0.26 12.68 5.44 85.63 0.47 13.15 16 19 C -0.54 -26.89 9.37 25.60 0.24 -26.65 16 20 H 0.07 3.46 7.82 -2.91 -0.02 3.44 16 21 C 0.01 0.77 5.45 84.65 0.46 1.23 16 22 N -0.93 -52.23 13.28 21.45 0.28 -51.94 16 23 Si 0.96 40.44 29.54 68.60 2.03 42.46 16 24 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 25 H -0.29 -12.24 7.11 99.48 0.71 -11.54 16 26 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 27 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 28 H 0.08 1.15 8.05 -2.39 -0.02 1.13 16 29 H 0.06 1.26 7.70 -2.39 -0.02 1.24 16 30 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 31 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 32 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 33 H 0.13 3.07 6.33 -2.92 -0.02 3.05 16 34 H 0.05 1.63 7.72 -2.39 -0.02 1.61 16 35 H 0.09 2.25 7.62 -2.38 -0.02 2.23 16 36 H 0.09 3.47 7.46 -2.39 -0.02 3.45 16 37 H 0.10 2.96 7.97 -2.39 -0.02 2.94 16 38 H 0.06 1.52 8.04 -2.39 -0.02 1.50 16 39 H 0.07 1.72 7.60 -2.39 -0.02 1.70 16 40 H 0.09 2.03 7.94 -2.39 -0.02 2.01 16 41 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.08 2.51 8.07 -2.39 -0.02 2.49 16 43 H 0.08 2.19 7.33 -2.39 -0.02 2.17 16 44 H 0.02 0.91 8.11 -2.38 -0.02 0.89 16 45 H 0.02 1.26 6.97 -2.39 -0.02 1.25 16 46 H 0.27 14.16 8.32 -92.71 -0.77 13.39 16 Total: -1.00 -67.16 392.69 0.75 -66.41 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: 0.96 Total: 21.10 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: 6.18 Total: -9.79 kcal Atomic # 7 Polarization: -127.17 SS G_CDS: -3.21 Total: -130.38 kcal Atomic # 8 Polarization: -97.59 SS G_CDS: -4.87 Total: -102.45 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.46 kcal Atomic # 16 Polarization: 112.99 SS G_CDS: -0.34 Total: 112.65 kcal Total: -67.16 0.75 -66.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028084009.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.145 kcal (2) G-P(sol) polarization free energy of solvation -67.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds