Wall clock time and date at job start Wed Apr 1 2020 00:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35491 * 125.50678 * 2 1 4 4 C 1.39803 * 107.84243 * 180.02562 * 3 2 1 5 5 C 1.38003 * 106.96674 * 359.97438 * 4 3 2 6 6 C 1.46491 * 126.25995 * 179.97438 * 5 4 3 7 7 O 1.21623 * 120.00070 * 0.02936 * 6 5 4 8 8 O 1.34896 * 119.99752 * 180.02562 * 6 5 4 9 9 C 1.45200 * 116.99878 * 185.08027 * 8 6 5 10 10 C 1.50697 * 109.47027 * 184.92054 * 9 8 6 11 11 O 1.21280 * 120.00227 * 4.99899 * 10 9 8 12 12 N 1.34779 * 120.00107 * 184.98899 * 10 9 8 13 13 C 1.37131 * 119.99835 * 3.76008 * 12 10 9 14 14 H 1.07997 * 120.00711 * 308.19966 * 13 12 10 15 15 C 1.38893 * 119.99843 * 128.19785 * 13 12 10 16 16 N 1.31424 * 120.00121 * 173.09572 * 15 13 12 17 17 Si 1.86800 * 119.99722 * 353.09266 * 15 13 12 18 18 H 1.48502 * 109.47048 * 95.34719 * 17 15 13 19 19 H 1.48507 * 109.47027 * 215.34331 * 17 15 13 20 20 H 1.48490 * 109.47458 * 335.34352 * 17 15 13 21 21 C 1.39795 * 120.00033 * 183.76429 * 12 10 9 22 22 C 1.38958 * 120.07869 * 171.69574 * 21 12 10 23 23 C 1.38079 * 119.92203 * 180.23107 * 22 21 12 24 24 C 1.38305 * 120.07735 * 359.46814 * 23 22 21 25 25 C 1.38308 * 120.15644 * 0.55655 * 24 23 22 26 26 C 1.38082 * 120.07598 * 359.70051 * 25 24 23 27 27 N 1.34965 * 125.50703 * 180.31122 * 2 1 3 28 28 C 1.46493 * 125.63491 * 0.02562 * 27 2 1 29 29 H 1.08993 * 109.47306 * 89.96896 * 1 2 3 30 30 H 1.08996 * 109.46849 * 209.97949 * 1 2 3 31 31 H 1.09010 * 109.46713 * 329.97549 * 1 2 3 32 32 H 1.07999 * 126.08207 * 0.02562 * 3 2 1 33 33 H 1.07996 * 126.51648 * 180.02562 * 4 3 2 34 34 H 1.09005 * 109.47074 * 64.92762 * 9 8 6 35 35 H 1.08995 * 109.47215 * 304.92726 * 9 8 6 36 36 H 0.97001 * 119.99906 * 179.97438 * 16 15 13 37 37 H 1.08003 * 120.03299 * 359.95345 * 22 21 12 38 38 H 1.08001 * 119.95783 * 179.74883 * 23 22 21 39 39 H 1.07996 * 119.92437 * 180.25361 * 24 23 22 40 40 H 1.07996 * 119.96199 * 179.71950 * 25 24 23 41 41 H 1.08008 * 120.03961 * 180.02562 * 26 25 24 42 42 H 1.08996 * 109.47183 * 270.21712 * 28 27 2 43 43 H 1.09008 * 109.47020 * 30.22293 * 28 27 2 44 44 H 1.09003 * 109.47109 * 150.21901 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.1030 0.0000 4 6 3.6260 0.6787 -0.0006 5 6 3.6092 -0.7012 -0.0004 6 6 4.7798 -1.5819 -0.0013 7 8 5.8990 -1.1059 -0.0019 8 8 4.6163 -2.9209 -0.0015 9 6 5.8157 -3.7314 0.1121 10 6 5.4530 -5.1875 -0.0266 11 8 4.3136 -5.5059 -0.2938 12 7 6.3948 -6.1360 0.1461 13 6 7.6644 -5.7809 0.5235 14 1 8.1995 -5.0221 -0.0280 15 6 8.2623 -6.3972 1.6152 16 7 9.5238 -6.1577 1.8956 17 14 7.2734 -7.5663 2.6850 18 1 7.4989 -8.9625 2.2320 19 1 7.7056 -7.4289 4.0992 20 1 5.8296 -7.2371 2.5746 21 6 6.0774 -7.4818 -0.0596 22 6 7.0808 -8.4431 -0.0519 23 6 6.7643 -9.7709 -0.2602 24 6 5.4489 -10.1459 -0.4654 25 6 4.4477 -9.1918 -0.4742 26 6 4.7576 -7.8615 -0.2718 27 7 2.2909 -1.0987 -0.0060 28 6 1.8174 -2.4849 -0.0140 29 1 -0.3633 0.0006 -1.0276 30 1 -0.3633 -0.8901 0.5135 31 1 -0.3633 0.8899 0.5143 32 1 1.9528 2.1277 0.0004 33 1 4.5017 1.3108 -0.0004 34 1 6.2772 -3.5631 1.0852 35 1 6.5169 -3.4550 -0.6752 36 1 9.9412 -6.5878 2.6583 37 1 8.1076 -8.1513 0.1123 38 1 7.5442 -10.5180 -0.2584 39 1 5.2036 -11.1856 -0.6240 40 1 3.4222 -9.4876 -0.6392 41 1 3.9752 -7.1170 -0.2784 42 1 1.6959 -2.8333 1.0116 43 1 0.8597 -2.5388 -0.5320 44 1 2.5442 -3.1142 -0.5278 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053225847.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:42:07 Heat of formation + Delta-G solvation = -29.006645 kcal Electronic energy + Delta-G solvation = -29613.569554 eV Core-core repulsion = 25497.680725 eV Total energy + Delta-G solvation = -4115.888829 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.141 amu Computer time = 3.17 seconds Orbital eigenvalues (eV) -42.62781 -41.98485 -40.98353 -39.23339 -37.58798 -37.02028 -34.28275 -33.91974 -32.82388 -31.77396 -31.57877 -29.48687 -27.75219 -27.46316 -27.17234 -24.16626 -23.41473 -22.96122 -21.49340 -21.29533 -20.56631 -20.05953 -19.07490 -18.10371 -17.93789 -17.91035 -17.56725 -17.09367 -16.61622 -16.33173 -16.03049 -15.77951 -15.45267 -15.04336 -14.79549 -14.72501 -14.51164 -14.43518 -14.18966 -14.02594 -13.95560 -13.76246 -13.64529 -13.63000 -13.22687 -12.93796 -12.88329 -12.71158 -12.64124 -12.52364 -12.15270 -12.02539 -11.95395 -11.90155 -11.40856 -10.91212 -10.26384 -9.80666 -9.68859 -9.18426 -8.94842 -8.62590 -6.59963 0.09113 0.33856 0.52221 1.12558 1.20475 1.25797 1.34524 1.57736 1.60535 1.78059 2.04385 2.07364 2.46010 2.66570 3.05341 3.54076 3.54952 3.88011 3.91629 4.01070 4.10449 4.16231 4.18272 4.25714 4.35365 4.44406 4.48424 4.64667 4.69227 4.74353 4.79352 4.80363 4.83543 4.98729 5.06900 5.15669 5.19197 5.26743 5.42109 5.52687 5.62595 5.69468 5.74823 5.87129 5.88188 5.93466 6.23311 6.32275 6.53255 6.70758 7.04810 7.33019 8.41394 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.015503 B = 0.003202 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.696364 B = 8742.783221 C = 9942.609602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.069 3.931 3 C -0.220 4.220 4 C -0.098 4.098 5 C -0.089 4.089 6 C 0.532 3.468 7 O -0.532 6.532 8 O -0.341 6.341 9 C 0.079 3.921 10 C 0.496 3.504 11 O -0.549 6.549 12 N -0.410 5.410 13 C -0.377 4.377 14 H 0.090 0.910 15 C 0.062 3.938 16 N -0.882 5.882 17 Si 0.915 3.085 18 H -0.234 1.234 19 H -0.285 1.285 20 H -0.278 1.278 21 C 0.123 3.877 22 C -0.172 4.172 23 C -0.107 4.107 24 C -0.152 4.152 25 C -0.104 4.104 26 C -0.199 4.199 27 N -0.416 5.416 28 C 0.060 3.940 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.105 0.895 32 H 0.176 0.824 33 H 0.152 0.848 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.287 0.713 37 H 0.119 0.881 38 H 0.143 0.857 39 H 0.155 0.845 40 H 0.150 0.850 41 H 0.168 0.832 42 H 0.082 0.918 43 H 0.119 0.881 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.653 4.757 -2.690 18.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.050 4.050 3 C -0.243 4.243 4 C -0.124 4.124 5 C -0.198 4.198 6 C 0.380 3.620 7 O -0.422 6.422 8 O -0.257 6.257 9 C 0.003 3.997 10 C 0.287 3.713 11 O -0.432 6.432 12 N -0.122 5.122 13 C -0.503 4.503 14 H 0.108 0.892 15 C -0.147 4.147 16 N -0.516 5.516 17 Si 0.740 3.260 18 H -0.157 1.157 19 H -0.211 1.211 20 H -0.204 1.204 21 C 0.028 3.972 22 C -0.192 4.192 23 C -0.126 4.126 24 C -0.171 4.171 25 C -0.123 4.123 26 C -0.219 4.219 27 N -0.091 5.091 28 C -0.081 4.081 29 H 0.111 0.889 30 H 0.096 0.904 31 H 0.124 0.876 32 H 0.193 0.807 33 H 0.170 0.830 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.097 0.903 37 H 0.137 0.863 38 H 0.161 0.839 39 H 0.173 0.827 40 H 0.168 0.832 41 H 0.185 0.815 42 H 0.100 0.900 43 H 0.137 0.863 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -17.711 4.346 -2.711 18.437 hybrid contribution 1.109 -0.388 0.654 1.344 sum -16.603 3.958 -2.057 17.192 Atomic orbital electron populations 1.20626 0.84261 1.05225 1.04528 1.21328 0.95916 0.85054 1.02746 1.21038 0.90779 0.99598 1.12858 1.21596 0.99538 0.90428 1.00875 1.19291 0.81954 0.93052 1.25483 1.20305 0.88544 0.80572 0.72588 1.90878 1.26108 1.76652 1.48581 1.86576 1.36845 1.18221 1.84056 1.22373 0.85129 0.87091 1.05151 1.20405 0.84296 0.87703 0.78851 1.90213 1.20431 1.81705 1.50866 1.41243 1.10247 1.03029 1.57649 1.18921 0.90133 1.26920 1.14323 0.89201 1.25833 0.95602 0.97016 0.96220 1.69708 1.11402 1.42065 1.28459 0.86301 0.79313 0.82190 0.78226 1.15735 1.21130 1.20368 1.18716 0.94723 0.84597 0.99167 1.21089 0.99023 0.93728 1.05410 1.21248 0.98074 0.94450 0.98812 1.21444 0.92188 1.00773 1.02712 1.21448 1.00693 0.91742 0.98397 1.22786 0.96123 0.99407 1.03567 1.44107 1.04324 1.08035 1.52591 1.22432 1.02841 0.78097 1.04684 0.88884 0.90396 0.87601 0.80652 0.83009 0.88032 0.88265 0.90300 0.86349 0.83881 0.82726 0.83205 0.81515 0.89992 0.86309 0.89906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.84 9.82 71.24 0.70 -0.14 16 2 C 0.07 1.32 6.85 41.44 0.28 1.60 16 3 C -0.22 -4.38 10.71 22.01 0.24 -4.15 16 4 C -0.10 -2.61 10.66 22.59 0.24 -2.37 16 5 C -0.09 -2.79 6.89 40.32 0.28 -2.51 16 6 C 0.53 20.12 7.91 69.97 0.55 20.67 16 7 O -0.53 -22.61 16.59 19.43 0.32 -22.29 16 8 O -0.34 -13.29 7.19 -51.72 -0.37 -13.66 16 9 C 0.08 3.35 4.87 71.23 0.35 3.69 16 10 C 0.50 22.93 7.65 87.66 0.67 23.60 16 11 O -0.55 -25.24 12.92 15.72 0.20 -25.04 16 12 N -0.41 -20.07 2.26 -458.90 -1.04 -21.11 16 13 C -0.38 -19.71 7.96 84.02 0.67 -19.04 16 14 H 0.09 5.00 7.90 -2.91 -0.02 4.97 16 15 C 0.06 3.22 4.29 84.91 0.36 3.59 16 16 N -0.88 -47.97 13.96 21.65 0.30 -47.67 16 17 Si 0.91 42.70 24.15 68.60 1.66 44.35 16 18 H -0.23 -10.15 6.06 99.48 0.60 -9.55 16 19 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 20 H -0.28 -13.79 6.90 99.48 0.69 -13.10 16 21 C 0.12 5.67 4.40 38.22 0.17 5.83 16 22 C -0.17 -7.47 5.77 22.40 0.13 -7.34 16 23 C -0.11 -3.75 9.79 22.25 0.22 -3.53 16 24 C -0.15 -4.63 10.04 22.30 0.22 -4.40 16 25 C -0.10 -3.45 10.04 22.25 0.22 -3.22 16 26 C -0.20 -8.29 9.03 22.41 0.20 -8.09 16 27 N -0.42 -10.42 3.15 -520.20 -1.64 -12.06 16 28 C 0.06 1.32 10.13 127.77 1.29 2.61 16 29 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.08 0.63 7.64 -2.39 -0.02 0.61 16 31 H 0.11 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.18 2.31 8.06 -2.91 -0.02 2.29 16 33 H 0.15 3.85 8.06 -2.91 -0.02 3.83 16 34 H 0.10 4.42 7.90 -2.38 -0.02 4.40 16 35 H 0.10 4.18 7.95 -2.39 -0.02 4.16 16 36 H 0.29 14.48 8.31 -92.71 -0.77 13.71 16 37 H 0.12 5.61 5.69 -2.91 -0.02 5.60 16 38 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 39 H 0.16 3.35 8.06 -2.91 -0.02 3.33 16 40 H 0.15 3.80 8.06 -2.91 -0.02 3.78 16 41 H 0.17 7.27 4.58 -58.77 -0.27 7.00 16 42 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.12 1.71 7.58 -2.38 -0.02 1.69 16 44 H 0.08 2.36 6.15 -2.39 -0.01 2.35 16 Total: -1.00 -67.75 365.53 6.89 -60.86 By element: Atomic # 1 Polarization: 29.14 SS G_CDS: 0.65 Total: 29.79 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: 6.80 Total: 6.81 kcal Atomic # 7 Polarization: -78.46 SS G_CDS: -2.37 Total: -80.83 kcal Atomic # 8 Polarization: -61.14 SS G_CDS: 0.15 Total: -60.98 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 1.66 Total: 44.35 kcal Total: -67.75 6.89 -60.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053225847.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.852 kcal (2) G-P(sol) polarization free energy of solvation -67.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.17 seconds