Wall clock time and date at job start Wed Apr 1 2020 00:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35896 * 117.00039 * 2 1 4 4 C 1.38757 * 120.05265 * 359.97438 * 3 2 1 5 5 C 1.38130 * 119.94053 * 180.02562 * 4 3 2 6 6 C 1.38281 * 120.05819 * 359.97438 * 5 4 3 7 7 C 1.50703 * 119.94547 * 180.02562 * 6 5 4 8 8 N 1.46502 * 109.47045 * 89.99988 * 7 6 5 9 9 C 1.46499 * 120.00046 * 275.00031 * 8 7 6 10 10 S 1.65600 * 119.99866 * 94.99840 * 8 7 6 11 11 O 1.42098 * 106.40199 * 203.53695 * 10 8 7 12 12 O 1.42099 * 106.40358 * 336.46357 * 10 8 7 13 13 N 1.65603 * 107.21524 * 90.00008 * 10 8 7 14 14 C 1.46500 * 119.99686 * 90.00044 * 13 10 8 15 15 C 1.46496 * 119.99986 * 269.99850 * 13 10 8 16 16 C 1.50701 * 109.47033 * 95.00385 * 15 13 10 17 17 H 1.07997 * 119.99841 * 359.97438 * 16 15 13 18 18 C 1.37876 * 120.00057 * 180.02562 * 16 15 13 19 19 N 1.31508 * 120.00154 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 119.99987 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.46896 * 90.00054 * 20 18 16 22 22 H 1.48496 * 109.47431 * 209.99922 * 20 18 16 23 23 H 1.48503 * 109.47185 * 330.00324 * 20 18 16 24 24 C 1.38248 * 120.10951 * 0.02562 * 6 5 4 25 25 C 1.38166 * 120.05883 * 359.76356 * 24 6 5 26 26 C 1.50701 * 120.02891 * 180.25589 * 25 24 6 27 27 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47187 * 300.00222 * 1 2 3 29 29 H 1.09001 * 109.46558 * 60.00270 * 1 2 3 30 30 H 1.07997 * 120.03063 * 0.02562 * 4 3 2 31 31 H 1.07996 * 119.96795 * 179.97438 * 5 4 3 32 32 H 1.08995 * 109.47189 * 209.99792 * 7 6 5 33 33 H 1.08996 * 109.46612 * 330.00034 * 7 6 5 34 34 H 1.09003 * 109.47062 * 90.00336 * 9 8 7 35 35 H 1.08998 * 109.47137 * 209.99819 * 9 8 7 36 36 H 1.08997 * 109.46833 * 330.00490 * 9 8 7 37 37 H 1.09004 * 109.47221 * 89.99981 * 14 13 10 38 38 H 1.09004 * 109.46935 * 209.99517 * 14 13 10 39 39 H 1.08997 * 109.47439 * 329.99717 * 14 13 10 40 40 H 1.09003 * 109.47158 * 214.99786 * 15 13 10 41 41 H 1.08996 * 109.47507 * 335.00096 * 15 13 10 42 42 H 0.97004 * 119.99969 * 180.02562 * 19 18 16 43 43 H 1.08009 * 119.96868 * 180.02562 * 24 6 5 44 44 H 1.08999 * 109.46852 * 270.22884 * 26 25 24 45 45 H 1.08994 * 109.46996 * 30.23768 * 26 25 24 46 46 H 1.08996 * 109.46797 * 150.23660 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9209 3.6048 -0.0011 6 6 3.3019 3.6758 -0.0005 7 6 3.9860 5.0186 -0.0005 8 7 4.2072 5.4540 1.3807 9 6 3.1443 6.1526 2.1076 10 16 5.6586 5.1564 2.1203 11 8 5.4058 5.1658 3.5186 12 8 6.2350 4.0487 1.4420 13 7 6.6401 6.4546 1.8139 14 6 6.6534 7.5957 2.7325 15 6 7.4951 6.4618 0.6243 16 6 6.7925 7.1861 -0.4949 17 1 5.8074 7.5993 -0.3361 18 6 7.4068 7.3203 -1.7219 19 7 6.7935 7.9520 -2.6988 20 14 9.1104 6.6049 -1.9968 21 1 8.9876 5.2093 -2.4890 22 1 9.8343 7.4227 -3.0029 23 1 9.8635 6.6139 -0.7169 24 6 4.0559 2.5171 0.0000 25 6 3.4311 1.2848 0.0049 26 6 4.2538 0.0222 0.0113 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 0.2128 2.3203 -0.0005 31 1 1.3340 4.5113 -0.0019 32 1 4.9441 4.9382 -0.5139 33 1 3.3582 5.7462 -0.5148 34 1 2.5222 5.4252 2.6292 35 1 3.5878 6.8365 2.8312 36 1 2.5320 6.7157 1.4033 37 1 7.4109 7.4358 3.4998 38 1 6.8840 8.5056 2.1783 39 1 5.6751 7.6949 3.2029 40 1 8.4323 6.9691 0.8535 41 1 7.7024 5.4360 0.3196 42 1 7.2256 8.0461 -3.5622 43 1 5.1344 2.5753 0.0008 44 1 4.4565 -0.2846 -1.0148 45 1 5.1955 0.2047 0.5289 46 1 3.7042 -0.7669 0.5245 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103160850.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:24 Heat of formation + Delta-G solvation = -81.853971 kcal Electronic energy + Delta-G solvation = -29287.878888 eV Core-core repulsion = 25305.142378 eV Total energy + Delta-G solvation = -3982.736510 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.19940 -37.87072 -36.74479 -35.68733 -35.54636 -35.26465 -32.68161 -32.47166 -30.67116 -28.44321 -27.87291 -27.00080 -26.39240 -25.19403 -24.11000 -21.92361 -21.76912 -20.63038 -18.34633 -17.92997 -17.38435 -16.91469 -16.72122 -16.27844 -15.89318 -15.81309 -15.06667 -14.77299 -14.30307 -14.13308 -13.91411 -13.66991 -13.39163 -13.33123 -13.08604 -13.00661 -12.66312 -12.52277 -12.42585 -12.10587 -12.08450 -12.02035 -11.87280 -11.74456 -11.39760 -11.33681 -11.25125 -11.22433 -11.06238 -10.89737 -10.68747 -10.57696 -10.47181 -10.23026 -9.62010 -8.77135 -8.67677 -8.62563 -8.13237 -7.91593 -6.19023 -4.19819 1.13611 1.50250 1.58443 3.24716 3.25523 3.31446 3.35145 3.41682 3.87367 4.12810 4.32864 4.80083 4.87130 4.90842 4.99391 4.99771 5.11208 5.12060 5.14658 5.28439 5.43242 5.49843 5.54148 5.66635 5.71323 5.76874 5.82475 5.85112 5.93321 5.99312 6.09836 6.15772 6.25003 6.30082 6.41267 6.43695 6.44528 6.56364 6.78308 6.86046 6.93521 7.00056 7.10658 7.37987 7.43330 7.51953 8.38119 8.84604 9.41892 10.93012 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.012596 B = 0.004008 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.385193 B = 6984.638479 C = 7794.475937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.317 6.317 3 C 0.120 3.880 4 C -0.212 4.212 5 C -0.071 4.071 6 C -0.133 4.133 7 C 0.172 3.828 8 N -0.999 5.999 9 C 0.101 3.899 10 S 2.787 3.213 11 O -0.996 6.996 12 O -0.976 6.976 13 N -0.993 5.993 14 C 0.105 3.895 15 C 0.213 3.787 16 C -0.543 4.543 17 H 0.082 0.918 18 C 0.078 3.922 19 N -0.892 5.892 20 Si 0.867 3.133 21 H -0.271 1.271 22 H -0.285 1.285 23 H -0.264 1.264 24 C -0.063 4.063 25 C -0.121 4.121 26 C -0.104 4.104 27 H 0.096 0.904 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.124 0.876 31 H 0.123 0.877 32 H 0.105 0.895 33 H 0.085 0.915 34 H 0.049 0.951 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.045 0.955 38 H 0.076 0.924 39 H 0.054 0.946 40 H 0.035 0.965 41 H 0.043 0.957 42 H 0.265 0.735 43 H 0.149 0.851 44 H 0.066 0.934 45 H 0.068 0.932 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.016 -9.039 6.112 15.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.075 3.925 4 C -0.231 4.231 5 C -0.089 4.089 6 C -0.136 4.136 7 C 0.047 3.953 8 N -0.837 5.837 9 C -0.046 4.046 10 S 2.796 3.204 11 O -0.980 6.980 12 O -0.960 6.960 13 N -0.834 5.834 14 C -0.041 4.041 15 C 0.089 3.911 16 C -0.582 4.582 17 H 0.100 0.900 18 C -0.126 4.126 19 N -0.530 5.530 20 Si 0.694 3.306 21 H -0.196 1.196 22 H -0.211 1.211 23 H -0.188 1.188 24 C -0.082 4.082 25 C -0.122 4.122 26 C -0.161 4.161 27 H 0.114 0.886 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.142 0.858 31 H 0.141 0.859 32 H 0.124 0.876 33 H 0.103 0.897 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.063 0.937 38 H 0.095 0.905 39 H 0.073 0.927 40 H 0.053 0.947 41 H 0.061 0.939 42 H 0.075 0.925 43 H 0.166 0.834 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.675 -9.901 6.438 15.920 hybrid contribution 0.316 0.408 -0.606 0.796 sum -10.360 -9.493 5.832 15.214 Atomic orbital electron populations 1.23000 0.78940 1.03503 1.01223 1.86041 1.20867 1.27186 1.88984 1.18842 0.91818 0.83966 0.97910 1.21109 0.99511 0.92365 1.10076 1.20807 0.93963 0.96785 0.97388 1.20354 0.93714 0.96274 1.03214 1.20137 1.02537 0.90995 0.81620 1.57857 1.30317 1.72011 1.23482 1.21355 0.91028 0.96063 0.96107 1.01780 0.72391 0.73683 0.72574 1.93537 1.85607 1.87491 1.31391 1.93522 1.76738 1.50027 1.75718 1.57497 1.56591 1.34560 1.34747 1.21263 1.00462 0.90289 0.92123 1.19616 0.90719 0.98393 0.82373 1.21451 1.05233 1.36830 0.94648 0.90030 1.24841 0.97460 0.94477 0.95802 1.69883 1.38166 1.41657 1.03247 0.86982 0.85053 0.79870 0.78733 1.19612 1.21054 1.18844 1.21300 1.01487 0.90207 0.95171 1.19295 0.90415 0.96331 1.06149 1.20600 0.99033 0.94301 1.02157 0.88586 0.92871 0.92812 0.85834 0.85949 0.87644 0.89650 0.93219 0.91720 0.91215 0.93670 0.90524 0.92722 0.94660 0.93869 0.92470 0.83373 0.91537 0.91343 0.91577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -3.99 9.54 -19.41 -0.19 -4.18 16 3 C 0.12 1.70 6.66 -39.22 -0.26 1.44 16 4 C -0.21 -2.74 9.04 -39.43 -0.36 -3.10 16 5 C -0.07 -0.97 9.69 -39.61 -0.38 -1.35 16 6 C -0.13 -2.14 5.46 -104.60 -0.57 -2.72 16 7 C 0.17 2.94 5.49 -5.19 -0.03 2.91 16 8 N -1.00 -16.99 3.23 -123.05 -0.40 -17.39 16 9 C 0.10 1.38 10.33 59.85 0.62 2.00 16 10 S 2.79 54.60 5.98 -107.50 -0.64 53.95 16 11 O -1.00 -20.40 16.28 -57.17 -0.93 -21.33 16 12 O -0.98 -20.85 13.78 -57.17 -0.79 -21.64 16 13 N -0.99 -19.82 3.23 -123.05 -0.40 -20.22 16 14 C 0.11 1.76 10.31 59.85 0.62 2.37 16 15 C 0.21 4.83 4.48 -5.20 -0.02 4.81 16 16 C -0.54 -13.85 9.94 -34.44 -0.34 -14.19 16 17 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 18 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 19 N -0.89 -25.27 13.96 55.43 0.77 -24.50 16 20 Si 0.87 20.28 27.47 -169.99 -4.67 15.61 16 21 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.26 -5.92 6.54 56.52 0.37 -5.55 16 24 C -0.06 -1.06 8.93 -39.60 -0.35 -1.41 16 25 C -0.12 -1.87 5.89 -104.47 -0.62 -2.48 16 26 C -0.10 -1.38 9.79 36.01 0.35 -1.03 16 27 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 29 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 30 H 0.12 1.25 6.30 -52.49 -0.33 0.92 16 31 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 32 H 0.11 2.06 7.55 -51.93 -0.39 1.67 16 33 H 0.09 1.34 7.91 -51.93 -0.41 0.93 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.85 7.37 -51.93 -0.38 0.47 16 36 H 0.07 0.81 7.94 -51.93 -0.41 0.40 16 37 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 39 H 0.05 0.81 7.37 -51.93 -0.38 0.42 16 40 H 0.04 0.79 7.17 -51.93 -0.37 0.42 16 41 H 0.04 1.01 6.34 -51.93 -0.33 0.68 16 42 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.15 2.67 6.60 -52.48 -0.35 2.32 16 44 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.07 0.89 8.09 -51.93 -0.42 0.47 16 46 H 0.07 0.82 7.53 -51.93 -0.39 0.43 16 LS Contribution 386.04 15.07 5.82 5.82 Total: -1.00 -31.60 386.04 -8.96 -40.56 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -7.09 Total: 2.86 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: -0.45 Total: -9.55 kcal Atomic # 7 Polarization: -62.09 SS G_CDS: -0.02 Total: -62.11 kcal Atomic # 8 Polarization: -45.25 SS G_CDS: -1.90 Total: -47.15 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -4.67 Total: 15.61 kcal Atomic # 16 Polarization: 54.60 SS G_CDS: -0.64 Total: 53.95 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.60 -8.96 -40.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103160850.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.291 kcal (2) G-P(sol) polarization free energy of solvation -31.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds