Wall clock time and date at job start Wed Apr 1 2020 00:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38537 * 119.83626 * 2 1 4 4 C 1.37743 * 120.35151 * 180.02562 * 3 2 1 5 5 C 1.39804 * 119.99717 * 0.02562 * 4 3 2 6 6 C 1.47552 * 120.16718 * 179.97438 * 5 4 3 7 7 O 1.21590 * 120.00141 * 232.45056 * 6 5 4 8 8 N 1.34775 * 119.99195 * 52.45017 * 6 5 4 9 9 C 1.46498 * 120.00387 * 355.22722 * 8 6 5 10 10 C 1.50698 * 109.46813 * 264.77843 * 9 8 6 11 11 H 1.07997 * 120.00211 * 0.02562 * 10 9 8 12 12 C 1.37881 * 119.99638 * 180.02562 * 10 9 8 13 13 N 1.31519 * 119.99948 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00055 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47110 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47399 * 119.99694 * 14 12 10 17 17 H 1.48501 * 109.47138 * 240.00230 * 14 12 10 18 18 C 1.46504 * 119.99277 * 175.22582 * 8 6 5 19 19 C 1.50701 * 109.46912 * 90.00491 * 18 8 6 20 20 C 1.38231 * 119.62242 * 94.97481 * 19 18 8 21 21 C 1.38622 * 119.16069 * 179.79043 * 20 19 18 22 22 C 1.38683 * 118.42108 * 0.47202 * 21 20 19 23 23 C 1.38178 * 119.16329 * 359.50679 * 22 21 20 24 24 N 1.31857 * 119.61506 * 274.99255 * 19 18 8 25 25 C 1.39975 * 119.67125 * 0.24056 * 5 4 3 26 26 O 1.35743 * 120.17500 * 179.74034 * 25 5 4 27 27 C 1.38436 * 119.83178 * 180.02562 * 2 1 3 28 28 O 1.36003 * 120.00145 * 359.97033 * 27 2 1 29 29 H 1.09000 * 109.47465 * 89.99562 * 1 2 3 30 30 H 1.08999 * 109.47188 * 209.99574 * 1 2 3 31 31 H 1.09001 * 109.47254 * 329.99745 * 1 2 3 32 32 H 1.08008 * 119.82677 * 0.04780 * 3 2 1 33 33 H 1.07994 * 120.00681 * 180.02562 * 4 3 2 34 34 H 1.08994 * 109.47151 * 24.77973 * 9 8 6 35 35 H 1.09004 * 109.47018 * 144.78066 * 9 8 6 36 36 H 0.97001 * 119.99816 * 179.97438 * 13 12 10 37 37 H 1.08992 * 109.47361 * 330.00222 * 18 8 6 38 38 H 1.09005 * 109.47259 * 209.99632 * 18 8 6 39 39 H 1.07998 * 120.41667 * 0.02562 * 20 19 18 40 40 H 1.08001 * 120.79107 * 180.23468 * 21 20 19 41 41 H 1.08002 * 120.41588 * 179.78506 * 22 21 20 42 42 H 1.07990 * 119.61920 * 180.25188 * 23 22 21 43 43 H 0.96702 * 113.99589 * 90.00088 * 26 25 5 44 44 H 0.96701 * 113.99381 * 90.00761 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1962 1.2017 0.0000 4 6 3.5736 1.2141 -0.0005 5 6 4.2834 0.0097 -0.0016 6 6 5.7589 0.0186 -0.0028 7 8 6.3701 -0.6191 -0.8384 8 7 6.4290 0.7336 0.9225 9 6 5.6958 1.5843 1.8632 10 6 5.6508 2.9949 1.3347 11 1 6.1209 3.2337 0.3921 12 6 5.0094 3.9806 2.0545 13 7 4.4365 3.6896 3.2020 14 14 4.9530 5.7289 1.3991 15 1 5.6661 5.7931 0.0981 16 1 3.5390 6.1412 1.2098 17 1 5.6095 6.6424 2.3685 18 6 7.8908 0.6600 0.9874 19 6 8.4871 1.7224 0.1004 20 6 8.8510 2.9405 0.6432 21 6 9.4027 3.9093 -0.1807 22 6 9.5593 3.6190 -1.5277 23 6 9.1727 2.3789 -1.9987 24 7 8.6554 1.4794 -1.1846 25 6 3.5874 -1.2048 -0.0073 26 8 4.2663 -2.3802 -0.0137 27 6 2.1956 -1.2009 -0.0005 28 8 1.5122 -2.3767 -0.0005 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5139 32 1 1.6507 2.1339 0.0008 33 1 4.1052 2.1541 -0.0001 34 1 4.6799 1.2069 1.9785 35 1 6.1990 1.5745 2.8301 36 1 3.9856 4.3832 3.7086 37 1 8.2205 -0.3224 0.6497 38 1 8.2173 0.8195 2.0151 39 1 8.7108 3.1336 1.6965 40 1 9.6999 4.8687 0.2163 41 1 9.9825 4.3515 -2.1993 42 1 9.2951 2.1436 -3.0455 43 1 4.4636 -2.7252 0.8679 44 1 1.3143 -2.7166 -0.8839 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179480580.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:05 Heat of formation + Delta-G solvation = -51.857879 kcal Electronic energy + Delta-G solvation = -30542.221894 eV Core-core repulsion = 26425.342161 eV Total energy + Delta-G solvation = -4116.879733 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.141 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.30339 -39.70624 -38.45655 -36.70597 -36.13846 -35.05628 -32.92447 -32.15286 -31.90780 -31.03684 -28.84151 -27.82131 -27.30710 -25.65261 -23.15926 -22.92499 -22.32329 -22.04025 -21.30930 -19.31045 -17.77466 -17.63245 -16.76193 -16.45246 -16.28634 -16.01912 -15.64472 -15.37309 -15.10536 -14.87020 -14.67825 -14.23928 -13.75291 -13.58392 -13.39594 -13.18820 -12.93265 -12.69790 -12.60494 -12.44644 -12.30258 -11.95741 -11.81548 -11.52722 -11.49403 -11.31999 -11.20610 -11.01936 -10.90754 -10.59299 -10.28706 -10.03322 -9.83471 -9.41352 -9.05503 -8.94012 -8.70431 -8.48830 -8.22199 -8.11051 -7.75998 -6.27729 -4.33985 1.32035 1.53909 1.56173 1.76922 3.11697 3.22356 3.25902 3.35879 3.77686 3.95926 4.22757 4.33768 4.45671 4.62061 4.77470 5.02651 5.07837 5.18374 5.21170 5.33353 5.42455 5.46932 5.58798 5.61119 5.69495 5.85980 5.89195 5.95273 5.98076 6.08566 6.17742 6.21545 6.29484 6.53910 6.58252 6.62658 6.67985 6.76642 6.87394 7.10521 7.14304 7.16188 7.48667 7.66814 7.69099 7.96955 8.03323 8.27011 8.53612 8.72547 9.01620 9.32553 10.78026 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.010204 B = 0.004983 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2743.258398 B = 5618.039688 C = 7430.279618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.086 4.086 3 C -0.124 4.124 4 C -0.051 4.051 5 C -0.135 4.135 6 C 0.561 3.439 7 O -0.529 6.529 8 N -0.590 5.590 9 C 0.231 3.769 10 C -0.533 4.533 11 H 0.063 0.937 12 C 0.071 3.929 13 N -0.882 5.882 14 Si 0.884 3.116 15 H -0.271 1.271 16 H -0.281 1.281 17 H -0.282 1.282 18 C 0.174 3.826 19 C 0.124 3.876 20 C -0.130 4.130 21 C -0.086 4.086 22 C -0.181 4.181 23 C 0.086 3.914 24 N -0.459 5.459 25 C 0.124 3.876 26 O -0.481 6.481 27 C 0.055 3.945 28 O -0.489 6.489 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.129 0.871 33 H 0.166 0.834 34 H 0.046 0.954 35 H 0.034 0.966 36 H 0.265 0.735 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.137 0.863 40 H 0.127 0.873 41 H 0.125 0.875 42 H 0.146 0.854 43 H 0.386 0.614 44 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.180 -3.187 -3.717 4.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.087 4.087 3 C -0.142 4.142 4 C -0.069 4.069 5 C -0.139 4.139 6 C 0.348 3.652 7 O -0.406 6.406 8 N -0.321 5.321 9 C 0.111 3.889 10 C -0.572 4.572 11 H 0.081 0.919 12 C -0.133 4.133 13 N -0.519 5.519 14 Si 0.711 3.289 15 H -0.196 1.196 16 H -0.207 1.207 17 H -0.208 1.208 18 C 0.050 3.950 19 C -0.015 4.015 20 C -0.151 4.151 21 C -0.112 4.112 22 C -0.201 4.201 23 C -0.071 4.071 24 N -0.168 5.168 25 C 0.078 3.922 26 O -0.290 6.290 27 C 0.010 3.990 28 O -0.298 6.298 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.147 0.853 33 H 0.184 0.816 34 H 0.064 0.936 35 H 0.052 0.948 36 H 0.075 0.925 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.155 0.845 40 H 0.145 0.855 41 H 0.143 0.857 42 H 0.164 0.836 43 H 0.242 0.758 44 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -0.212 -4.167 -4.296 5.989 hybrid contribution 0.079 2.153 0.139 2.159 sum -0.132 -2.014 -4.157 4.621 Atomic orbital electron populations 1.20687 0.90791 1.03182 1.02046 1.20205 0.96542 0.92204 0.99702 1.20921 0.94212 0.96971 1.02093 1.22111 0.94029 0.99098 0.91712 1.20230 0.94331 0.93232 1.06095 1.18009 0.86465 0.79395 0.81341 1.90773 1.69053 1.43947 1.36784 1.48103 1.05040 1.44725 1.34258 1.19632 0.92707 0.88853 0.87704 1.21465 1.35749 0.93078 1.06857 0.91915 1.24891 0.95022 0.98695 0.94696 1.69932 1.35048 1.33748 1.13216 0.86640 0.78133 0.84783 0.79295 1.19580 1.20720 1.20765 1.20087 0.80855 0.96883 0.97199 1.21629 0.94166 0.94735 0.91004 1.21997 0.97559 0.93667 1.01853 1.21493 0.97007 0.99056 0.93665 1.22032 1.03104 0.98589 0.96405 1.22640 0.95246 0.89855 0.99382 1.67585 1.10876 1.34244 1.04099 1.18724 0.88636 0.84967 0.99895 1.84759 1.76047 1.35231 1.32952 1.18339 0.88405 0.85439 1.06778 1.84777 1.75700 1.36219 1.33108 0.91445 0.91008 0.91265 0.85320 0.81650 0.93584 0.94768 0.92507 0.89439 0.89341 0.84491 0.85507 0.85708 0.83642 0.75773 0.76251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 9.78 36.00 0.35 -0.98 16 2 C -0.09 -1.34 5.89 -104.44 -0.62 -1.96 16 3 C -0.12 -2.13 9.67 -39.65 -0.38 -2.52 16 4 C -0.05 -1.03 7.63 -39.18 -0.30 -1.32 16 5 C -0.14 -2.76 4.79 -104.86 -0.50 -3.26 16 6 C 0.56 12.32 6.87 -12.46 -0.09 12.23 16 7 O -0.53 -12.84 16.30 -0.51 -0.01 -12.84 16 8 N -0.59 -12.28 2.45 -177.66 -0.44 -12.72 16 9 C 0.23 5.14 4.71 -5.20 -0.02 5.12 16 10 C -0.53 -12.59 6.11 -34.44 -0.21 -12.80 16 11 H 0.06 1.57 7.00 -52.49 -0.37 1.21 16 12 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 13 N -0.88 -22.52 13.29 55.43 0.74 -21.79 16 14 Si 0.88 19.33 29.54 -169.99 -5.02 14.31 16 15 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 16 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 17 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 18 C 0.17 3.24 5.72 -5.19 -0.03 3.21 16 19 C 0.12 2.35 5.83 -82.58 -0.48 1.87 16 20 C -0.13 -2.26 8.65 -39.44 -0.34 -2.60 16 21 C -0.09 -1.33 10.18 -39.28 -0.40 -1.73 16 22 C -0.18 -2.66 10.11 -39.44 -0.40 -3.06 16 23 C 0.09 1.43 11.18 -17.55 -0.20 1.23 16 24 N -0.46 -9.06 10.27 -9.47 -0.10 -9.16 16 25 C 0.12 2.30 6.71 -38.58 -0.26 2.04 16 26 O -0.48 -8.45 12.42 -40.36 -0.50 -8.95 16 27 C 0.06 0.91 6.68 -39.16 -0.26 0.65 16 28 O -0.49 -6.83 12.30 -34.27 -0.42 -7.25 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.84 7.51 -51.93 -0.39 0.45 16 31 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 32 H 0.13 1.99 8.06 -52.48 -0.42 1.56 16 33 H 0.17 3.64 5.16 -52.49 -0.27 3.37 16 34 H 0.05 1.09 5.63 -51.93 -0.29 0.80 16 35 H 0.03 0.79 7.97 -51.93 -0.41 0.38 16 36 H 0.27 6.51 8.31 -40.82 -0.34 6.18 16 37 H 0.09 1.65 7.49 -51.93 -0.39 1.26 16 38 H 0.09 1.43 7.84 -51.93 -0.41 1.02 16 39 H 0.14 2.28 8.06 -52.49 -0.42 1.86 16 40 H 0.13 1.63 8.06 -52.49 -0.42 1.20 16 41 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 42 H 0.15 2.01 8.06 -52.49 -0.42 1.59 16 43 H 0.39 5.25 9.06 45.56 0.41 5.67 16 44 H 0.38 3.76 9.06 45.56 0.41 4.18 16 LS Contribution 375.43 15.07 5.66 5.66 Total: -1.00 -31.65 375.43 -8.12 -39.77 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -3.80 Total: 15.20 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -4.23 Total: -2.24 kcal Atomic # 7 Polarization: -43.87 SS G_CDS: 0.20 Total: -43.66 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -0.93 Total: -29.04 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.02 Total: 14.31 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.65 -8.12 -39.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179480580.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.088 kcal (2) G-P(sol) polarization free energy of solvation -31.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds