Wall clock time and date at job start Wed Apr 1 2020 00:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35902 * 116.99980 * 2 1 4 4 C 1.38757 * 120.05678 * 359.97438 * 3 2 1 5 5 C 1.38119 * 119.94430 * 180.02562 * 4 3 2 6 6 C 1.50700 * 119.97378 * 180.02562 * 5 4 3 7 7 C 1.38286 * 120.05474 * 359.97438 * 5 4 3 8 8 C 1.38237 * 120.11290 * 359.97438 * 7 5 4 9 9 C 1.50707 * 119.97539 * 180.02562 * 8 7 5 10 10 N 1.46501 * 109.47168 * 89.99737 * 9 8 7 11 11 S 1.65598 * 120.00034 * 165.00185 * 10 9 8 12 12 O 1.42100 * 106.40183 * 311.46236 * 11 10 9 13 13 O 1.42101 * 106.40217 * 178.54484 * 11 10 9 14 14 N 1.65597 * 107.21541 * 65.00515 * 11 10 9 15 15 C 1.46503 * 119.99956 * 269.99520 * 14 11 10 16 16 C 1.46497 * 120.00227 * 89.99985 * 14 11 10 17 17 H 1.09003 * 109.46733 * 0.02562 * 16 14 11 18 18 C 1.53000 * 109.47145 * 119.99787 * 16 14 11 19 19 C 1.50694 * 109.47115 * 239.99861 * 16 14 11 20 20 H 1.08000 * 120.00563 * 359.97438 * 19 16 14 21 21 C 1.37885 * 119.99902 * 180.02562 * 19 16 14 22 22 N 1.31516 * 119.99913 * 359.97438 * 21 19 16 23 23 Si 1.86798 * 119.99766 * 179.97438 * 21 19 16 24 24 H 1.48506 * 109.46985 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47276 * 299.99832 * 23 21 19 26 26 H 1.48498 * 109.47150 * 60.00043 * 23 21 19 27 27 C 1.38168 * 120.05880 * 0.27750 * 8 7 5 28 28 H 1.09008 * 109.46974 * 300.00108 * 1 2 3 29 29 H 1.09004 * 109.47446 * 59.99698 * 1 2 3 30 30 H 1.09002 * 109.47396 * 180.02562 * 1 2 3 31 31 H 1.08004 * 120.02544 * 0.04572 * 4 3 2 32 32 H 1.08996 * 109.46958 * 269.98199 * 6 5 4 33 33 H 1.09002 * 109.46913 * 29.97527 * 6 5 4 34 34 H 1.08993 * 109.47372 * 149.97666 * 6 5 4 35 35 H 1.08006 * 119.94225 * 180.02562 * 7 5 4 36 36 H 1.09001 * 109.46602 * 330.00280 * 9 8 7 37 37 H 1.08992 * 109.47327 * 210.00109 * 9 8 7 38 38 H 0.96998 * 119.99681 * 345.00768 * 10 9 8 39 39 H 1.08994 * 109.47665 * 270.00896 * 15 14 11 40 40 H 1.09008 * 109.46786 * 30.00504 * 15 14 11 41 41 H 1.08997 * 109.47360 * 149.99945 * 15 14 11 42 42 H 1.09000 * 109.47156 * 59.99824 * 18 16 14 43 43 H 1.08997 * 109.47359 * 180.02562 * 18 16 14 44 44 H 1.09007 * 109.47356 * 300.00099 * 18 16 14 45 45 H 0.97001 * 119.99646 * 179.97438 * 22 21 19 46 46 H 1.07992 * 120.03129 * 179.73926 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3754 -0.0005 5 6 1.9209 3.6048 -0.0011 6 6 1.1020 4.8699 -0.0011 7 6 3.3019 3.6758 -0.0005 8 6 4.0559 2.5171 0.0011 9 6 5.5608 2.5981 0.0022 10 7 6.0473 2.6256 1.3838 11 16 7.6467 2.3403 1.7043 12 8 7.9956 1.1632 0.9887 13 8 7.8036 2.4701 3.1106 14 7 8.5115 3.5764 1.0213 15 6 8.9916 3.4597 -0.3579 16 6 8.7966 4.7865 1.7962 17 1 8.3634 4.6907 2.7918 18 6 10.3108 4.9712 1.9149 19 6 8.1979 5.9814 1.1001 20 1 7.6592 5.8525 0.1729 21 6 8.3386 7.2396 1.6463 22 7 8.9950 7.3967 2.7751 23 14 7.5971 8.7208 0.7830 24 1 7.8859 9.9475 1.5686 25 1 8.1878 8.8504 -0.5732 26 1 6.1274 8.5421 0.6677 27 6 3.4311 1.2848 -0.0036 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 0.2128 2.3204 -0.0002 32 1 0.9045 5.1748 -1.0287 33 1 0.1574 4.6913 0.5128 34 1 1.6516 5.6585 0.5127 35 1 3.7922 4.6381 -0.0005 36 1 5.8761 3.5060 -0.5121 37 1 5.9719 1.7286 -0.5105 38 1 5.4325 2.8108 2.1109 39 1 9.9834 3.0077 -0.3605 40 1 8.3058 2.8343 -0.9297 41 1 9.0425 4.4503 -0.8100 42 1 10.7443 5.0666 0.9194 43 1 10.5229 5.8713 2.4919 44 1 10.7439 4.1068 2.4185 45 1 9.0943 8.2819 3.1592 46 1 4.0206 0.3800 -0.0066 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282293327.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:30 Heat of formation + Delta-G solvation = -93.733839 kcal Electronic energy + Delta-G solvation = -28518.998581 eV Core-core repulsion = 24535.746922 eV Total energy + Delta-G solvation = -3983.251659 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.37176 -38.06687 -36.66150 -36.13964 -35.23308 -35.19572 -32.60432 -32.47198 -30.31934 -29.07780 -28.09741 -26.77586 -25.63139 -25.37115 -25.18039 -21.92363 -20.94390 -20.71751 -18.83746 -17.79675 -17.15628 -16.71775 -16.53104 -16.35441 -16.08945 -15.96239 -15.76348 -15.02505 -14.35467 -14.26750 -13.84673 -13.60291 -13.44153 -13.27807 -13.22030 -12.96818 -12.71400 -12.51124 -12.34484 -12.04458 -11.98929 -11.81119 -11.77760 -11.50859 -11.35665 -11.35385 -11.21157 -11.00936 -10.97412 -10.88199 -10.83809 -10.44074 -10.21511 -10.07678 -9.37893 -9.12936 -8.86400 -8.48718 -8.27148 -7.95976 -6.09946 -4.18549 1.01463 1.32328 1.42365 3.06604 3.23815 3.30229 3.30360 3.43778 3.74279 4.19059 4.34169 4.54192 4.55763 4.82023 4.87263 4.90704 5.03648 5.06212 5.18812 5.20520 5.26667 5.31176 5.43777 5.45996 5.51265 5.58496 5.66846 5.80554 6.00660 6.08422 6.15257 6.17820 6.35448 6.42171 6.56051 6.64105 6.67005 6.88640 6.88872 7.12325 7.23792 7.26051 7.53792 7.62504 7.78646 8.05117 8.25748 8.83939 9.47483 10.95082 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.011421 B = 0.003743 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2451.133651 B = 7478.328506 C = 9321.477073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.124 3.876 4 C -0.206 4.206 5 C -0.050 4.050 6 C -0.116 4.116 7 C -0.136 4.136 8 C -0.049 4.049 9 C 0.163 3.837 10 N -1.123 6.123 11 S 2.783 3.217 12 O -0.998 6.998 13 O -0.980 6.980 14 N -0.990 5.990 15 C 0.105 3.895 16 C 0.268 3.732 17 H 0.059 0.941 18 C -0.145 4.145 19 C -0.526 4.526 20 H 0.062 0.938 21 C 0.064 3.936 22 N -0.887 5.887 23 Si 0.897 3.103 24 H -0.287 1.287 25 H -0.277 1.277 26 H -0.277 1.277 27 C -0.140 4.140 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.098 0.902 31 H 0.125 0.875 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.132 0.868 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.414 0.586 39 H 0.043 0.957 40 H 0.049 0.951 41 H 0.080 0.920 42 H 0.032 0.968 43 H 0.092 0.908 44 H 0.012 0.988 45 H 0.264 0.736 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.478 -8.440 -7.508 19.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.079 3.921 4 C -0.225 4.225 5 C -0.050 4.050 6 C -0.173 4.173 7 C -0.155 4.155 8 C -0.051 4.051 9 C 0.037 3.963 10 N -0.882 5.882 11 S 2.792 3.208 12 O -0.982 6.982 13 O -0.965 6.965 14 N -0.833 5.833 15 C -0.042 4.042 16 C 0.165 3.835 17 H 0.076 0.924 18 C -0.204 4.204 19 C -0.565 4.565 20 H 0.081 0.919 21 C -0.138 4.138 22 N -0.525 5.525 23 Si 0.724 3.276 24 H -0.213 1.213 25 H -0.203 1.203 26 H -0.203 1.203 27 C -0.159 4.159 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.117 0.883 31 H 0.143 0.857 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.150 0.850 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.247 0.753 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.098 0.902 42 H 0.051 0.949 43 H 0.111 0.889 44 H 0.031 0.969 45 H 0.074 0.926 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -14.833 -9.281 -7.043 18.862 hybrid contribution -1.132 1.473 -0.360 1.892 sum -15.965 -7.809 -7.403 19.253 Atomic orbital electron populations 1.23031 0.78596 1.03790 1.01262 1.86079 1.21205 1.26970 1.88882 1.18937 0.92196 0.84028 0.96898 1.21087 0.99720 0.91880 1.09855 1.19688 0.93875 0.94518 0.96925 1.20821 0.99233 0.94736 1.02487 1.21023 0.92922 0.98630 1.02901 1.19633 0.95116 0.92286 0.98075 1.20107 0.89999 1.02857 0.83384 1.56074 1.29100 1.89781 1.13236 1.01797 0.72610 0.73334 0.73095 1.93538 1.82891 1.46643 1.75083 1.93595 1.85246 1.87081 1.30530 1.57711 1.67765 1.34980 1.22817 1.21217 0.98144 1.02488 0.82319 1.18716 0.93602 0.79981 0.91160 0.92355 1.22056 0.97330 1.01072 0.99989 1.21334 1.34994 0.91287 1.08897 0.91945 1.24927 0.95149 0.98845 0.94920 1.69874 1.40818 1.23338 1.18450 0.86596 0.79551 0.81901 0.79511 1.21297 1.20273 1.20304 1.20352 0.91266 0.98388 1.05910 0.92726 0.92756 0.88348 0.85668 0.90963 0.91692 0.90888 0.85031 0.90252 0.89842 0.75277 0.93833 0.93236 0.90162 0.94875 0.88943 0.96889 0.92589 0.84931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.59 10.50 -19.43 -0.20 -3.79 16 3 C 0.12 1.51 6.69 -39.21 -0.26 1.25 16 4 C -0.21 -2.23 8.69 -39.43 -0.34 -2.57 16 5 C -0.05 -0.56 5.88 -104.65 -0.62 -1.17 16 6 C -0.12 -1.02 10.01 36.01 0.36 -0.66 16 7 C -0.14 -1.70 9.35 -39.56 -0.37 -2.07 16 8 C -0.05 -0.65 5.27 -104.64 -0.55 -1.20 16 9 C 0.16 2.25 6.37 -5.19 -0.03 2.22 16 10 N -1.12 -18.00 6.05 -11.65 -0.07 -18.07 16 11 S 2.78 54.38 6.09 -107.50 -0.66 53.72 16 12 O -1.00 -20.34 16.68 -57.17 -0.95 -21.29 16 13 O -0.98 -22.49 16.70 -57.17 -0.95 -23.44 16 14 N -0.99 -20.16 3.12 -115.85 -0.36 -20.52 16 15 C 0.10 1.82 9.28 59.85 0.56 2.37 16 16 C 0.27 6.47 2.62 -69.09 -0.18 6.29 16 17 H 0.06 1.57 6.91 -51.93 -0.36 1.21 16 18 C -0.14 -3.44 8.97 37.16 0.33 -3.10 16 19 C -0.53 -13.16 7.99 -34.44 -0.28 -13.44 16 20 H 0.06 1.50 7.33 -52.49 -0.38 1.11 16 21 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 22 N -0.89 -24.14 11.32 55.43 0.63 -23.52 16 23 Si 0.90 19.98 29.54 -169.99 -5.02 14.96 16 24 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 27 C -0.14 -1.80 9.64 -39.43 -0.38 -2.18 16 28 H 0.05 0.34 7.66 -51.92 -0.40 -0.06 16 29 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 30 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.13 1.05 6.30 -52.48 -0.33 0.72 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 34 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 35 H 0.13 1.64 8.06 -52.48 -0.42 1.21 16 36 H 0.08 1.06 8.08 -51.93 -0.42 0.64 16 37 H 0.08 1.10 7.69 -51.93 -0.40 0.70 16 38 H 0.41 6.24 8.64 -34.47 -0.30 5.94 16 39 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.05 0.73 7.79 -51.92 -0.40 0.32 16 41 H 0.08 1.40 7.02 -51.93 -0.36 1.04 16 42 H 0.03 0.73 7.67 -51.93 -0.40 0.33 16 43 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 44 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 46 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 389.20 15.07 5.87 5.87 Total: -1.00 -31.86 389.20 -9.57 -41.44 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -6.98 Total: 6.17 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: -0.86 Total: -11.51 kcal Atomic # 7 Polarization: -62.30 SS G_CDS: 0.20 Total: -62.11 kcal Atomic # 8 Polarization: -46.42 SS G_CDS: -2.11 Total: -48.53 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Atomic # 16 Polarization: 54.38 SS G_CDS: -0.66 Total: 53.72 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.86 -9.57 -41.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282293327.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.299 kcal (2) G-P(sol) polarization free energy of solvation -31.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds