Wall clock time and date at job start Wed Apr 1 2020 00:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 113.99956 * 2 1 4 4 C 1.53002 * 109.46984 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47304 * 66.27592 * 4 3 2 6 6 C 1.46498 * 120.00329 * 274.70275 * 5 4 3 7 7 C 1.50696 * 109.47396 * 280.92539 * 6 5 4 8 8 H 1.08002 * 119.99515 * 3.27218 * 7 6 5 9 9 C 1.37875 * 120.00343 * 183.27514 * 7 6 5 10 10 N 1.31515 * 120.00089 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 120.00224 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.46998 * 359.97438 * 11 9 7 13 13 H 1.48491 * 109.47232 * 119.99901 * 11 9 7 14 14 H 1.48504 * 109.46770 * 240.00002 * 11 9 7 15 15 S 1.65603 * 119.99906 * 94.70268 * 5 4 3 16 16 O 1.42095 * 106.40208 * 330.14191 * 15 5 4 17 17 O 1.42104 * 106.40065 * 197.21962 * 15 5 4 18 18 N 1.65600 * 107.21962 * 83.68297 * 15 5 4 19 19 C 1.46502 * 120.00021 * 64.81037 * 18 15 5 20 20 C 1.50701 * 109.47129 * 164.87679 * 19 18 15 21 21 C 1.38228 * 120.00126 * 90.00247 * 20 19 18 22 22 C 1.38238 * 119.99894 * 179.72491 * 21 20 19 23 23 C 1.38240 * 120.00136 * 0.25327 * 22 21 20 24 24 C 1.50691 * 120.00133 * 179.97438 * 23 22 21 25 25 C 1.38241 * 119.99567 * 0.02562 * 23 22 21 26 26 C 1.38233 * 120.00187 * 359.95158 * 25 23 22 27 27 H 1.09000 * 109.47043 * 60.00193 * 1 2 3 28 28 H 1.09001 * 109.47522 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47173 * 300.00548 * 1 2 3 30 30 H 1.08996 * 109.47484 * 59.99601 * 3 2 1 31 31 H 1.09008 * 109.47283 * 299.99607 * 3 2 1 32 32 H 1.08995 * 109.47064 * 306.27602 * 4 3 2 33 33 H 1.09001 * 109.47330 * 186.28124 * 4 3 2 34 34 H 1.09003 * 109.47122 * 40.92322 * 6 5 4 35 35 H 1.09006 * 109.47294 * 160.92131 * 6 5 4 36 36 H 0.97000 * 120.00606 * 179.97438 * 10 9 7 37 37 H 0.96992 * 120.00195 * 244.81394 * 18 15 5 38 38 H 1.08996 * 109.47162 * 44.87133 * 19 18 15 39 39 H 1.09003 * 109.46909 * 284.87302 * 19 18 15 40 40 H 1.08000 * 120.00520 * 359.97438 * 21 20 19 41 41 H 1.07995 * 120.00134 * 180.27213 * 22 21 20 42 42 H 1.09000 * 109.47039 * 90.00226 * 24 23 22 43 43 H 1.08999 * 109.47313 * 209.99942 * 24 23 22 44 44 H 1.08997 * 109.47452 * 330.00626 * 24 23 22 45 45 H 1.07996 * 119.99475 * 179.97438 * 25 23 22 46 46 H 1.08002 * 120.00234 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9789 0.5918 -1.2635 6 6 4.0102 -0.8646 -1.4185 7 6 5.2431 -1.4147 -0.7490 8 1 5.9066 -0.7531 -0.2119 9 6 5.5240 -2.7626 -0.8220 10 7 4.7158 -3.5683 -1.4757 11 14 7.0520 -3.4446 0.0086 12 1 7.7889 -2.3399 0.6733 13 1 6.6553 -4.4554 1.0214 14 1 7.9266 -4.0804 -1.0093 15 16 4.4449 1.5682 -2.5173 16 8 3.6979 2.7701 -2.3890 17 8 4.4216 0.7595 -3.6856 18 7 6.0300 1.9730 -2.2605 19 6 7.0646 0.9362 -2.2885 20 6 8.4211 1.5831 -2.4012 21 6 9.1208 1.9249 -1.2591 22 6 10.3675 2.5131 -1.3625 23 6 10.9122 2.7642 -2.6080 24 6 12.2710 3.4059 -2.7207 25 6 10.2099 2.4275 -3.7501 26 6 8.9634 1.8390 -3.6467 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8464 -0.8901 32 1 3.8493 0.5499 0.8293 33 1 3.9783 2.1742 0.1131 34 1 3.1225 -1.2982 -0.9579 35 1 4.0293 -1.1168 -2.4788 36 1 4.9136 -4.5165 -1.5274 37 1 6.2734 2.8966 -2.0915 38 1 6.9012 0.2829 -3.1455 39 1 7.0167 0.3502 -1.3706 40 1 8.6953 1.7288 -0.2860 41 1 10.9162 2.7762 -0.4703 42 1 13.0378 2.6315 -2.7432 43 1 12.3207 3.9930 -3.6377 44 1 12.4376 4.0572 -1.8628 45 1 10.6352 2.6241 -4.7231 46 1 8.4148 1.5756 -4.5390 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336905044.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:00 Heat of formation + Delta-G solvation = -125.808523 kcal Electronic energy + Delta-G solvation = -28766.490625 eV Core-core repulsion = 24781.848103 eV Total energy + Delta-G solvation = -3984.642522 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.38757 -39.04546 -38.30460 -36.98340 -36.87337 -36.49456 -34.49709 -33.22815 -31.81409 -31.00290 -28.85023 -28.42579 -26.98274 -25.21033 -24.59144 -23.59716 -23.27498 -21.72817 -20.40072 -18.87815 -18.59071 -18.38328 -17.53035 -17.18988 -17.05385 -16.57078 -16.44478 -16.32343 -15.96717 -15.79666 -15.58000 -15.03127 -14.55498 -14.46297 -14.35410 -14.19232 -13.91931 -13.86173 -13.48746 -13.35871 -13.23469 -13.16587 -13.10893 -12.93721 -12.91147 -12.67724 -12.66685 -12.51736 -12.22502 -12.01085 -11.86993 -11.85459 -11.77896 -11.57657 -10.56140 -10.50377 -10.39716 -9.81744 -9.73009 -9.45700 -8.08442 -6.20391 -0.34411 0.39945 0.51213 1.44765 1.46631 1.56737 2.02999 2.46986 2.59677 2.88847 3.00845 3.24494 3.44581 3.79288 3.93029 3.99553 4.11128 4.17375 4.22706 4.31688 4.40845 4.48463 4.52865 4.56574 4.60018 4.60892 4.71804 4.85772 4.87605 4.89449 4.91644 4.97197 5.01460 5.13807 5.21484 5.31055 5.49856 5.51387 5.64185 5.70689 5.73959 5.83888 5.94722 6.12825 6.20005 6.22212 6.41557 6.92028 7.48107 9.00366 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.010245 B = 0.004224 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2732.335505 B = 6627.674534 C = 8366.103750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.407 6.407 3 C 0.040 3.960 4 C 0.127 3.873 5 N -0.988 5.988 6 C 0.262 3.738 7 C -0.530 4.530 8 H 0.077 0.923 9 C 0.011 3.989 10 N -0.930 5.930 11 Si 0.951 3.049 12 H -0.252 1.252 13 H -0.284 1.284 14 H -0.286 1.286 15 S 2.796 3.204 16 O -1.004 7.004 17 O -1.018 7.018 18 N -1.108 6.108 19 C 0.163 3.837 20 C -0.111 4.111 21 C -0.106 4.106 22 C -0.127 4.127 23 C -0.089 4.089 24 C -0.111 4.111 25 C -0.129 4.129 26 C -0.114 4.114 27 H 0.039 0.961 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.042 0.958 32 H 0.088 0.912 33 H 0.110 0.890 34 H 0.029 0.971 35 H 0.013 0.987 36 H 0.262 0.738 37 H 0.421 0.579 38 H 0.061 0.939 39 H 0.082 0.918 40 H 0.131 0.869 41 H 0.144 0.856 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.141 0.859 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.638 15.051 3.114 17.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C -0.038 4.038 4 C 0.001 3.999 5 N -0.829 5.829 6 C 0.139 3.861 7 C -0.570 4.570 8 H 0.095 0.905 9 C -0.188 4.188 10 N -0.570 5.570 11 Si 0.776 3.224 12 H -0.176 1.176 13 H -0.211 1.211 14 H -0.213 1.213 15 S 2.805 3.195 16 O -0.988 6.988 17 O -1.002 7.002 18 N -0.871 5.871 19 C 0.037 3.963 20 C -0.113 4.113 21 C -0.125 4.125 22 C -0.145 4.145 23 C -0.089 4.089 24 C -0.168 4.168 25 C -0.146 4.146 26 C -0.133 4.133 27 H 0.058 0.942 28 H 0.103 0.897 29 H 0.079 0.921 30 H 0.104 0.896 31 H 0.060 0.940 32 H 0.106 0.894 33 H 0.128 0.872 34 H 0.047 0.953 35 H 0.031 0.969 36 H 0.071 0.929 37 H 0.256 0.744 38 H 0.080 0.920 39 H 0.100 0.900 40 H 0.149 0.851 41 H 0.162 0.838 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.096 0.904 45 H 0.159 0.841 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 8.100 14.782 2.290 17.011 hybrid contribution 0.244 -0.627 0.379 0.772 sum 8.344 14.155 2.669 16.646 Atomic orbital electron populations 1.22876 0.80539 1.03115 1.00611 1.88051 1.20689 1.28493 1.95445 1.23206 0.94703 0.84739 1.01200 1.21380 0.92377 0.99197 0.86902 1.57489 1.79265 1.17806 1.28294 1.18768 0.97259 0.74021 0.96062 1.21864 1.08619 0.93190 1.33284 0.90468 1.25759 0.99485 0.97554 0.96003 1.70098 1.38979 1.04618 1.43294 0.85616 0.79703 0.78873 0.78201 1.17561 1.21061 1.21269 1.01235 0.73191 0.71749 0.73346 1.93526 1.70220 1.47536 1.87559 1.93529 1.87137 1.70895 1.48636 1.55666 1.24182 1.17187 1.90021 1.20169 0.84436 0.88578 1.03082 1.19854 0.95604 1.01365 0.94447 1.21275 0.95256 0.97824 0.98149 1.21314 0.95301 0.99704 0.98139 1.20342 0.97685 0.98015 0.92882 1.20836 0.91761 1.00479 1.03718 1.21277 0.94330 0.99631 0.99411 1.21274 0.96424 0.98610 0.97016 0.94201 0.89729 0.92096 0.89574 0.93993 0.89391 0.87220 0.95256 0.96925 0.92914 0.74366 0.92034 0.89985 0.85072 0.83779 0.90401 0.90603 0.90376 0.84136 0.86160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.69 11.01 113.37 1.25 1.94 16 2 O -0.41 -15.11 9.07 -148.98 -1.35 -16.46 16 3 C 0.04 1.26 6.28 71.98 0.45 1.71 16 4 C 0.13 4.23 5.72 86.38 0.49 4.73 16 5 N -0.99 -40.74 2.84 -519.86 -1.47 -42.21 16 6 C 0.26 13.52 5.35 85.63 0.46 13.98 16 7 C -0.53 -27.42 8.52 25.60 0.22 -27.20 16 8 H 0.08 3.68 6.47 -2.91 -0.02 3.66 16 9 C 0.01 0.60 5.46 84.65 0.46 1.06 16 10 N -0.93 -55.05 13.29 21.45 0.28 -54.76 16 11 Si 0.95 42.23 29.54 68.60 2.03 44.25 16 12 H -0.25 -10.28 7.11 99.48 0.71 -9.57 16 13 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 14 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 15 S 2.80 111.10 6.07 -56.49 -0.34 110.76 16 16 O -1.00 -39.46 17.15 -128.00 -2.19 -41.66 16 17 O -1.02 -49.65 16.01 -128.00 -2.05 -51.70 16 18 N -1.11 -35.50 6.05 -190.79 -1.15 -36.65 16 19 C 0.16 5.55 6.34 85.63 0.54 6.09 16 20 C -0.11 -3.16 5.28 -19.87 -0.10 -3.27 16 21 C -0.11 -2.61 9.70 22.27 0.22 -2.39 16 22 C -0.13 -2.58 9.70 22.27 0.22 -2.36 16 23 C -0.09 -1.72 5.88 -19.87 -0.12 -1.83 16 24 C -0.11 -1.39 10.01 71.23 0.71 -0.68 16 25 C -0.13 -2.76 9.70 22.27 0.22 -2.55 16 26 C -0.11 -3.03 9.70 22.27 0.22 -2.81 16 27 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.04 1.39 7.94 -2.38 -0.02 1.37 16 32 H 0.09 3.00 8.06 -2.39 -0.02 2.98 16 33 H 0.11 2.86 7.79 -2.39 -0.02 2.84 16 34 H 0.03 1.65 6.62 -2.39 -0.02 1.63 16 35 H 0.01 0.75 6.76 -2.38 -0.02 0.73 16 36 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 37 H 0.42 10.96 8.64 -96.75 -0.84 10.12 16 38 H 0.06 2.39 7.70 -2.39 -0.02 2.38 16 39 H 0.08 2.98 5.88 -2.39 -0.01 2.96 16 40 H 0.13 2.98 8.06 -2.91 -0.02 2.96 16 41 H 0.14 2.18 8.06 -2.91 -0.02 2.15 16 42 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.08 0.80 8.09 -2.39 -0.02 0.78 16 44 H 0.08 0.79 8.09 -2.39 -0.02 0.77 16 45 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 46 H 0.12 3.17 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -72.47 393.27 -0.88 -73.35 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: 0.14 Total: 28.69 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: 5.23 Total: -13.59 kcal Atomic # 7 Polarization: -131.29 SS G_CDS: -2.34 Total: -133.63 kcal Atomic # 8 Polarization: -104.23 SS G_CDS: -5.60 Total: -109.83 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.25 kcal Atomic # 16 Polarization: 111.10 SS G_CDS: -0.34 Total: 110.76 kcal Total: -72.47 -0.88 -73.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336905044.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.459 kcal (2) G-P(sol) polarization free energy of solvation -72.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds