Wall clock time and date at job start Wed Apr 1 2020 00:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38281 * 119.97681 * 2 1 4 4 C 1.38242 * 120.11438 * 180.02562 * 3 2 1 5 5 C 1.38172 * 120.05324 * 359.68352 * 4 3 2 6 6 C 1.38707 * 119.94219 * 0.56726 * 5 4 3 7 7 O 1.35901 * 120.05524 * 179.72239 * 6 5 4 8 8 C 1.42896 * 116.99943 * 359.72675 * 7 6 5 9 9 C 1.53001 * 109.47270 * 179.97438 * 8 7 6 10 10 N 1.46506 * 109.46682 * 65.00640 * 9 8 7 11 11 S 1.65598 * 120.00181 * 165.00196 * 10 9 8 12 12 O 1.42102 * 106.39860 * 311.45789 * 11 10 9 13 13 O 1.42091 * 106.40576 * 178.53560 * 11 10 9 14 14 N 1.65598 * 107.21635 * 64.99320 * 11 10 9 15 15 C 1.46502 * 120.00561 * 269.99698 * 14 11 10 16 16 C 1.46509 * 119.99835 * 90.00560 * 14 11 10 17 17 H 1.08999 * 109.47022 * 359.97438 * 16 14 11 18 18 C 1.52997 * 109.47062 * 119.99654 * 16 14 11 19 19 C 1.50692 * 109.46787 * 239.99589 * 16 14 11 20 20 H 1.08003 * 120.00316 * 354.36999 * 19 16 14 21 21 C 1.37886 * 119.99877 * 174.36792 * 19 16 14 22 22 N 1.31510 * 119.99961 * 156.89610 * 21 19 16 23 23 Si 1.86796 * 119.99750 * 337.17309 * 21 19 16 24 24 H 1.48495 * 109.47179 * 179.72455 * 23 21 19 25 25 H 1.48502 * 109.47231 * 299.72156 * 23 21 19 26 26 H 1.48498 * 109.47554 * 59.72235 * 23 21 19 27 27 C 1.38129 * 119.96716 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.47174 * 270.02536 * 1 2 3 29 29 H 1.08996 * 109.46603 * 30.02231 * 1 2 3 30 30 H 1.08995 * 109.47507 * 150.02352 * 1 2 3 31 31 H 1.08003 * 119.94417 * 359.97438 * 3 2 1 32 32 H 1.08002 * 119.97274 * 179.97438 * 4 3 2 33 33 H 1.07995 * 120.02588 * 180.29411 * 5 4 3 34 34 H 1.09007 * 109.47083 * 60.00198 * 8 7 6 35 35 H 1.08998 * 109.47752 * 300.00183 * 8 7 6 36 36 H 1.08997 * 109.47413 * 305.00753 * 9 8 7 37 37 H 1.09000 * 109.47173 * 184.99659 * 9 8 7 38 38 H 0.96998 * 119.99747 * 344.99313 * 10 9 8 39 39 H 1.08992 * 109.47772 * 270.00982 * 15 14 11 40 40 H 1.09003 * 109.46297 * 30.00408 * 15 14 11 41 41 H 1.08994 * 109.47613 * 150.00053 * 15 14 11 42 42 H 1.09005 * 109.47375 * 293.29940 * 18 16 14 43 43 H 1.09000 * 109.47483 * 53.29843 * 18 16 14 44 44 H 1.09002 * 109.47176 * 173.30103 * 18 16 14 45 45 H 0.97006 * 120.00339 * 355.20022 * 22 21 19 46 46 H 1.07999 * 120.02839 * 0.03009 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1978 0.0000 4 6 3.5804 1.2011 -0.0005 5 6 4.2752 0.0069 0.0055 6 6 3.5845 -1.1960 0.0003 7 8 4.2657 -2.3720 0.0005 8 6 5.6926 -2.2952 0.0003 9 6 6.2794 -3.7082 0.0013 10 7 5.9275 -4.3839 -1.2501 11 16 6.7203 -5.7679 -1.6952 12 8 8.1082 -5.4995 -1.5502 13 8 6.1341 -6.1905 -2.9186 14 7 6.3487 -6.9280 -0.5733 15 6 7.1865 -7.0905 0.6175 16 6 5.1823 -7.7919 -0.7718 17 1 4.6866 -7.5245 -1.7050 18 6 5.6340 -9.2524 -0.8340 19 6 4.2225 -7.6114 0.3759 20 1 4.4972 -6.9926 1.2173 21 6 2.9936 -8.2363 0.3517 22 7 2.3533 -8.4714 1.4761 23 14 2.2420 -8.7560 -1.2775 24 1 0.9304 -9.4075 -1.0321 25 1 2.0478 -7.5605 -2.1368 26 1 3.1503 -9.7130 -1.9589 27 6 2.1970 -1.1966 0.0005 28 1 -0.3633 0.0005 1.0276 29 1 -0.3632 0.8898 -0.5142 30 1 -0.3634 -0.8901 -0.5134 31 1 1.6567 2.1324 -0.0004 32 1 4.1177 2.1380 -0.0010 33 1 5.3551 0.0100 0.0099 34 1 6.0279 -1.7623 0.8901 35 1 6.0277 -1.7629 -0.8898 36 1 5.8744 -4.2693 0.8434 37 1 7.3642 -3.6511 0.0906 38 1 5.2300 -4.0206 -1.8179 39 1 7.9808 -7.8068 0.4080 40 1 7.6253 -6.1298 0.8867 41 1 6.5766 -7.4557 1.4438 42 1 6.2324 -9.4097 -1.7314 43 1 6.2320 -9.4856 0.0469 44 1 4.7594 -9.9023 -0.8620 45 1 2.7749 -8.2689 2.3259 46 1 1.6569 -2.1319 0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337800521.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:08 Heat of formation + Delta-G solvation = -92.647486 kcal Electronic energy + Delta-G solvation = -28436.443797 eV Core-core repulsion = 24453.239245 eV Total energy + Delta-G solvation = -3983.204552 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.26913 -37.97041 -36.83297 -36.34756 -35.39426 -35.07429 -32.63733 -32.59789 -30.57981 -29.79831 -28.63656 -27.07895 -25.71910 -24.66238 -23.30524 -22.64287 -20.95784 -20.66731 -18.98248 -17.98139 -17.56695 -17.23610 -16.96500 -16.49357 -16.21087 -15.93218 -15.44466 -14.80413 -14.50761 -13.99413 -13.94523 -13.75596 -13.59529 -13.34006 -13.28765 -13.12087 -12.90218 -12.53979 -12.24596 -12.10841 -12.03973 -11.97574 -11.77656 -11.68482 -11.65665 -11.53289 -11.40043 -11.31167 -10.97137 -10.88673 -10.76342 -10.45711 -10.04825 -9.79882 -9.36339 -9.20328 -8.91706 -8.41845 -8.28324 -8.05700 -6.51323 -4.13190 1.12291 1.18107 1.33970 3.03781 3.35887 3.40169 3.46871 3.61273 3.62714 4.01180 4.46395 4.53877 4.65066 4.74502 4.80260 4.89340 4.97851 5.07401 5.09428 5.14452 5.18256 5.35774 5.37111 5.44906 5.45885 5.55899 5.71833 5.82857 5.94453 5.96397 6.03952 6.15772 6.20738 6.28347 6.39250 6.46172 6.48769 6.57770 6.66512 6.68174 6.98002 7.18186 7.32095 7.35748 7.51232 7.97395 8.32452 8.84979 9.51983 10.84050 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.010364 B = 0.003747 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2701.080520 B = 7470.931921 C = 9275.164214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.048 4.048 3 C -0.164 4.164 4 C -0.079 4.079 5 C -0.219 4.219 6 C 0.138 3.862 7 O -0.303 6.303 8 C 0.054 3.946 9 C 0.125 3.875 10 N -1.124 6.124 11 S 2.784 3.216 12 O -0.996 6.996 13 O -0.982 6.982 14 N -0.984 5.984 15 C 0.106 3.894 16 C 0.247 3.753 17 H 0.047 0.953 18 C -0.153 4.153 19 C -0.615 4.615 20 H 0.066 0.934 21 C 0.044 3.956 22 N -0.893 5.893 23 Si 1.023 2.977 24 H -0.283 1.283 25 H -0.279 1.279 26 H -0.274 1.274 27 C -0.152 4.152 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.126 0.874 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.417 0.583 39 H 0.044 0.956 40 H 0.050 0.950 41 H 0.081 0.919 42 H 0.026 0.974 43 H 0.049 0.951 44 H 0.061 0.939 45 H 0.270 0.730 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.481 16.985 -1.048 17.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.048 4.048 3 C -0.182 4.182 4 C -0.097 4.097 5 C -0.238 4.238 6 C 0.093 3.907 7 O -0.216 6.216 8 C -0.022 4.022 9 C -0.002 4.002 10 N -0.884 5.884 11 S 2.792 3.208 12 O -0.980 6.980 13 O -0.967 6.967 14 N -0.826 5.826 15 C -0.040 4.040 16 C 0.142 3.858 17 H 0.064 0.936 18 C -0.213 4.213 19 C -0.653 4.653 20 H 0.084 0.916 21 C -0.163 4.163 22 N -0.525 5.525 23 Si 0.851 3.149 24 H -0.208 1.208 25 H -0.205 1.205 26 H -0.200 1.200 27 C -0.170 4.170 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.144 0.856 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.112 0.888 38 H 0.250 0.750 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.100 0.900 42 H 0.045 0.955 43 H 0.068 0.932 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.787 15.933 -2.342 16.344 hybrid contribution 1.013 1.083 0.934 1.753 sum 3.800 17.016 -1.408 17.492 Atomic orbital electron populations 1.20824 0.90745 1.03048 1.02649 1.19724 0.96110 0.92223 0.96714 1.20908 0.94148 0.97457 1.05727 1.20885 0.94169 0.97265 0.97381 1.21240 1.00192 0.92295 1.10028 1.19033 0.91855 0.84717 0.95119 1.86206 1.19621 1.27699 1.88110 1.23029 0.78963 0.98092 1.02139 1.21267 0.99605 0.91713 0.87593 1.55917 1.55331 1.44955 1.32219 1.01760 0.73127 0.72544 0.73351 1.93546 1.32022 1.85245 1.87170 1.93584 1.78906 1.81042 1.43127 1.57488 1.39334 1.49146 1.36670 1.21225 0.93683 1.00131 0.88996 1.18951 0.82284 0.86355 0.98165 0.93573 1.22392 1.00766 0.99012 0.99108 1.22117 1.02345 1.34909 1.05944 0.91614 1.25575 0.94363 0.93340 1.03070 1.70857 1.41835 1.41434 0.98396 0.84342 0.76972 0.77654 0.75980 1.20846 1.20508 1.19956 1.20427 0.91103 0.98955 1.06556 0.90833 0.91408 0.91070 0.86149 0.85991 0.85585 0.90690 0.91184 0.90137 0.88779 0.74960 0.93731 0.93134 0.90033 0.95472 0.93189 0.92065 0.92045 0.84830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 10.01 36.01 0.36 -0.63 16 2 C -0.05 -0.52 5.88 -104.64 -0.62 -1.14 16 3 C -0.16 -1.63 9.70 -39.56 -0.38 -2.02 16 4 C -0.08 -0.78 10.04 -39.60 -0.40 -1.17 16 5 C -0.22 -2.41 9.04 -39.43 -0.36 -2.76 16 6 C 0.14 1.84 6.69 -39.22 -0.26 1.58 16 7 O -0.30 -4.34 9.94 -19.43 -0.19 -4.54 16 8 C 0.05 0.61 4.93 37.16 0.18 0.79 16 9 C 0.13 1.62 6.63 -4.04 -0.03 1.60 16 10 N -1.12 -17.60 6.02 -10.61 -0.06 -17.66 16 11 S 2.78 52.36 6.09 -107.50 -0.66 51.70 16 12 O -1.00 -19.24 16.68 -57.17 -0.95 -20.20 16 13 O -0.98 -21.41 16.70 -57.17 -0.95 -22.37 16 14 N -0.98 -19.66 3.12 -115.86 -0.36 -20.02 16 15 C 0.11 1.82 9.15 59.85 0.55 2.37 16 16 C 0.25 5.74 2.22 -69.08 -0.15 5.59 16 17 H 0.05 1.14 5.49 -51.93 -0.29 0.85 16 18 C -0.15 -3.34 9.01 37.16 0.33 -3.00 16 19 C -0.61 -16.00 8.30 -34.44 -0.29 -16.28 16 20 H 0.07 1.80 7.38 -52.48 -0.39 1.41 16 21 C 0.04 1.21 5.20 -17.82 -0.09 1.11 16 22 N -0.89 -25.98 13.70 55.43 0.76 -25.22 16 23 Si 1.02 24.57 26.44 -169.99 -4.49 20.08 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 26 H -0.27 -6.15 6.12 56.52 0.35 -5.80 16 27 C -0.15 -1.99 9.64 -39.43 -0.38 -2.37 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 30 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 31 H 0.12 0.93 8.06 -52.48 -0.42 0.50 16 32 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 33 H 0.13 1.13 6.30 -52.49 -0.33 0.80 16 34 H 0.08 0.66 7.65 -51.92 -0.40 0.27 16 35 H 0.07 0.68 7.67 -51.93 -0.40 0.28 16 36 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.09 1.05 7.75 -51.93 -0.40 0.65 16 38 H 0.42 6.24 8.51 -34.47 -0.29 5.95 16 39 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.73 7.79 -51.93 -0.40 0.33 16 41 H 0.08 1.48 6.92 -51.93 -0.36 1.12 16 42 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.05 1.02 7.45 -51.93 -0.39 0.64 16 44 H 0.06 1.37 5.44 -51.93 -0.28 1.09 16 45 H 0.27 7.78 8.73 -40.82 -0.36 7.42 16 46 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 385.45 15.07 5.81 5.81 Total: -1.00 -32.90 385.45 -9.57 -42.47 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -6.93 Total: 6.30 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: -1.53 Total: -16.35 kcal Atomic # 7 Polarization: -63.24 SS G_CDS: 0.33 Total: -62.91 kcal Atomic # 8 Polarization: -45.00 SS G_CDS: -2.10 Total: -47.10 kcal Atomic # 14 Polarization: 24.57 SS G_CDS: -4.49 Total: 20.08 kcal Atomic # 16 Polarization: 52.36 SS G_CDS: -0.66 Total: 51.70 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.90 -9.57 -42.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337800521.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.176 kcal (2) G-P(sol) polarization free energy of solvation -32.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds