Wall clock time and date at job start Wed Apr 1 2020 01:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33991 * 126.90360 * 2 1 4 4 O 1.34437 * 110.16291 * 180.02562 * 3 2 1 5 5 C 1.34908 * 110.89020 * 0.02562 * 4 3 2 6 6 C 1.38975 * 133.31111 * 180.02562 * 5 4 3 7 7 C 1.37705 * 120.06623 * 179.97438 * 6 5 4 8 8 C 1.39389 * 120.61753 * 359.97438 * 7 6 5 9 9 N 1.39884 * 119.94692 * 179.97438 * 8 7 6 10 10 C 1.34781 * 120.00376 * 144.57599 * 9 8 7 11 11 O 1.21386 * 119.99698 * 4.77653 * 10 9 8 12 12 C 1.49334 * 120.00178 * 184.77076 * 10 9 8 13 13 O 1.21361 * 120.00139 * 5.11864 * 12 10 9 14 14 N 1.34777 * 120.00046 * 185.11279 * 12 10 9 15 15 C 1.46504 * 120.00206 * 185.05656 * 14 12 10 16 16 C 1.53001 * 109.47105 * 184.73358 * 15 14 12 17 17 C 1.50703 * 115.55164 * 304.05082 * 16 15 14 18 18 H 1.08004 * 119.99815 * 95.19948 * 17 16 15 19 19 C 1.37877 * 119.99917 * 274.92599 * 17 16 15 20 20 N 1.31516 * 119.99869 * 355.50501 * 19 17 16 21 21 Si 1.86801 * 119.99979 * 175.51373 * 19 17 16 22 22 H 1.48505 * 109.47068 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47131 * 119.99732 * 21 19 17 24 24 H 1.48502 * 109.47100 * 239.99787 * 21 19 17 25 25 C 1.52998 * 117.49578 * 89.72229 * 16 15 14 26 26 C 1.52992 * 117.49664 * 158.38121 * 16 15 14 27 27 C 1.38398 * 120.11100 * 0.25397 * 8 7 6 28 28 C 1.39377 * 119.53718 * 359.47868 * 27 8 7 29 29 H 1.09001 * 109.47065 * 89.97391 * 1 2 3 30 30 H 1.08999 * 109.46993 * 209.97666 * 1 2 3 31 31 H 1.08998 * 109.47213 * 329.97633 * 1 2 3 32 32 H 1.08005 * 124.92021 * 0.03977 * 3 2 1 33 33 H 1.07996 * 119.96534 * 359.97438 * 6 5 4 34 34 H 1.08000 * 119.69221 * 179.97438 * 7 6 5 35 35 H 0.97002 * 119.99919 * 324.58573 * 9 8 7 36 36 H 0.96995 * 119.99906 * 5.06070 * 14 12 10 37 37 H 1.09004 * 109.46949 * 64.73523 * 15 14 12 38 38 H 1.09000 * 109.47144 * 304.73635 * 15 14 12 39 39 H 0.97001 * 119.99806 * 184.99998 * 20 19 17 40 40 H 1.09008 * 117.49777 * 214.99950 * 25 16 15 41 41 H 1.08996 * 117.50057 * 0.02562 * 25 16 15 42 42 H 1.09006 * 117.50312 * 359.97397 * 26 16 15 43 43 H 1.09004 * 117.50073 * 144.97650 * 26 16 15 44 44 H 1.08002 * 120.23157 * 179.72327 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3116 1.0715 0.0000 4 8 3.5990 0.6842 -0.0006 5 6 3.6966 -0.6613 -0.0015 6 6 4.7742 -1.5390 -0.0019 7 6 4.5565 -2.8987 -0.0024 8 6 3.2598 -3.4101 -0.0020 9 7 3.0549 -4.7938 -0.0031 10 6 2.0157 -5.3218 0.6737 11 8 1.2084 -4.5923 1.2118 12 6 1.8575 -6.8041 0.7614 13 8 2.7125 -7.5338 0.3040 14 7 0.7651 -7.3316 1.3487 15 6 0.6609 -8.7811 1.5342 16 6 -0.7142 -9.1240 2.1107 17 6 -1.0715 -8.4271 3.3982 18 1 -1.6520 -7.5166 3.3763 19 6 -0.6622 -8.9549 4.6044 20 7 -0.0370 -10.1115 4.6377 21 14 -0.9960 -8.0275 6.1911 22 1 -1.7083 -6.7611 5.8839 23 1 -1.8358 -8.8637 7.0860 24 1 0.2911 -7.7200 6.8649 25 6 -1.8464 -9.4012 1.1196 26 6 -1.2259 -10.5525 1.9150 27 6 2.1747 -2.5510 -0.0064 28 6 2.3886 -1.1738 -0.0002 29 1 -0.3633 0.0005 -1.0277 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3633 0.8897 0.5142 32 1 1.9747 2.0976 0.0006 33 1 5.7833 -1.1542 -0.0018 34 1 5.3983 -3.5752 -0.0032 35 1 3.6607 -5.3735 -0.4908 36 1 0.0478 -6.7516 1.6485 37 1 1.4371 -9.1160 2.2224 38 1 0.7870 -9.2804 0.5735 39 1 0.1865 -10.5176 5.4898 40 1 -2.8498 -9.0796 1.3989 41 1 -1.6115 -9.3398 0.0570 42 1 -0.5831 -11.2480 1.3753 43 1 -1.8207 -10.9884 2.7177 44 1 1.1692 -2.9452 -0.0106 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430353301.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:44 Heat of formation + Delta-G solvation = -13.072529 kcal Electronic energy + Delta-G solvation = -28562.781880 eV Core-core repulsion = 24447.584006 eV Total energy + Delta-G solvation = -4115.197874 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.61967 -40.75127 -38.86125 -37.57554 -36.77928 -34.81385 -34.13620 -33.34694 -32.01984 -30.42027 -29.45827 -27.41388 -27.09023 -25.53957 -24.42123 -23.21768 -21.99316 -21.18214 -20.44361 -19.99063 -19.58591 -18.52797 -17.77739 -17.12604 -16.67683 -16.32812 -16.15989 -15.98270 -15.57886 -14.86030 -14.67840 -14.60687 -14.27450 -14.06183 -13.72647 -13.56690 -13.38402 -13.30020 -13.07898 -12.77119 -12.73933 -12.54977 -12.19313 -11.99129 -11.68154 -11.49132 -11.12233 -11.02252 -10.99327 -10.53780 -10.33385 -10.27733 -10.08407 -9.66667 -9.32701 -9.11604 -8.61656 -8.46420 -8.42485 -8.19785 -8.12028 -6.13157 -4.23401 0.71074 0.95316 1.71780 2.12415 2.45925 2.63495 3.23648 3.33326 3.35742 3.36950 3.57794 3.85145 4.24101 4.32848 4.41660 4.67927 4.79437 4.89511 4.97456 5.07225 5.14786 5.23363 5.29074 5.42029 5.45075 5.58185 5.66656 5.86640 5.91300 6.01599 6.05940 6.06847 6.22529 6.27330 6.36419 6.41410 6.51671 6.62155 6.70851 6.89182 6.96716 7.04076 7.07203 7.26064 7.45820 7.70238 7.77225 8.02361 8.26195 8.42492 8.79460 9.45225 10.93805 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.013576 B = 0.002554 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.979038 B =10958.578551 C =11658.816153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.174 4.174 3 C -0.001 4.001 4 O -0.195 6.195 5 C 0.039 3.961 6 C -0.090 4.090 7 C -0.109 4.109 8 C 0.127 3.873 9 N -0.648 5.648 10 C 0.508 3.492 11 O -0.497 6.497 12 C 0.498 3.502 13 O -0.539 6.539 14 N -0.660 5.660 15 C 0.159 3.841 16 C 0.020 3.980 17 C -0.503 4.503 18 H 0.063 0.937 19 C 0.075 3.925 20 N -0.874 5.874 21 Si 0.890 3.110 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.283 1.283 25 C -0.210 4.210 26 C -0.140 4.140 27 C -0.070 4.070 28 C -0.111 4.111 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.206 0.794 33 H 0.137 0.863 34 H 0.142 0.858 35 H 0.423 0.577 36 H 0.416 0.584 37 H 0.074 0.926 38 H 0.049 0.951 39 H 0.262 0.738 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.088 0.912 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.301 17.752 -11.264 21.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.175 4.175 3 C -0.065 4.065 4 O -0.096 6.096 5 C -0.009 4.009 6 C -0.109 4.109 7 C -0.129 4.129 8 C 0.033 3.967 9 N -0.296 5.296 10 C 0.291 3.709 11 O -0.370 6.370 12 C 0.277 3.723 13 O -0.418 6.418 14 N -0.309 5.309 15 C 0.036 3.964 16 C 0.019 3.981 17 C -0.540 4.540 18 H 0.081 0.919 19 C -0.130 4.130 20 N -0.510 5.510 21 Si 0.717 3.283 22 H -0.195 1.195 23 H -0.210 1.210 24 H -0.209 1.209 25 C -0.247 4.247 26 C -0.178 4.178 27 C -0.090 4.090 28 C -0.112 4.112 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.223 0.777 33 H 0.155 0.845 34 H 0.160 0.840 35 H 0.261 0.739 36 H 0.253 0.747 37 H 0.092 0.908 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.106 0.894 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 6.650 17.713 -11.004 21.887 hybrid contribution -0.266 0.303 0.983 1.062 sum 6.385 18.015 -10.021 21.581 Atomic orbital electron populations 1.20188 0.88411 1.03228 1.02351 1.21165 0.96907 0.90958 1.08472 1.23706 0.79770 0.99559 1.03501 1.84001 1.28141 1.20860 1.76628 1.19610 0.95414 0.81401 1.04434 1.19625 0.96735 0.90336 1.04187 1.20706 0.95586 0.94348 1.02211 1.17464 0.93342 0.82636 1.03241 1.43122 1.30421 1.05552 1.50505 1.20720 0.81437 0.90237 0.78514 1.90772 1.40931 1.61599 1.43720 1.19651 0.84040 0.87383 0.81247 1.90730 1.41980 1.61113 1.47949 1.45882 1.18891 1.10670 1.55487 1.21200 1.00095 0.76649 0.98447 1.19026 0.88230 0.96596 0.94207 1.20407 1.34973 1.09915 0.88715 0.91902 1.24986 0.94065 0.94876 0.99028 1.69993 1.39160 1.16029 1.25819 0.86572 0.78073 0.80246 0.83408 1.19508 1.20962 1.20903 1.23065 0.99223 1.07080 0.95355 1.22470 1.03063 0.91437 1.00810 1.20620 0.99810 0.90056 0.98540 1.19656 0.92539 0.93713 1.05309 0.91182 0.90846 0.91295 0.77728 0.84506 0.84038 0.73854 0.74701 0.90782 0.93243 0.92858 0.90223 0.91618 0.91709 0.89374 0.83629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.73 10.43 36.01 0.38 -0.35 16 2 C -0.17 -1.86 6.35 -102.66 -0.65 -2.51 16 3 C 0.00 -0.01 11.89 29.24 0.35 0.34 16 4 O -0.19 -2.17 10.58 3.66 0.04 -2.13 16 5 C 0.04 0.47 7.41 -38.46 -0.29 0.18 16 6 C -0.09 -0.90 10.05 -39.50 -0.40 -1.30 16 7 C -0.11 -1.10 9.93 -39.35 -0.39 -1.49 16 8 C 0.13 1.60 6.29 -83.70 -0.53 1.07 16 9 N -0.65 -8.35 5.32 -10.28 -0.05 -8.40 16 10 C 0.51 8.15 7.72 -11.64 -0.09 8.06 16 11 O -0.50 -8.88 13.96 5.47 0.08 -8.80 16 12 C 0.50 9.01 7.88 -11.64 -0.09 8.92 16 13 O -0.54 -10.43 16.48 5.49 0.09 -10.34 16 14 N -0.66 -12.87 5.40 -60.76 -0.33 -13.20 16 15 C 0.16 3.41 5.58 -4.04 -0.02 3.39 16 16 C 0.02 0.46 1.60 -155.66 -0.25 0.21 16 17 C -0.50 -12.75 8.15 -34.44 -0.28 -13.03 16 18 H 0.06 1.59 7.82 -52.48 -0.41 1.18 16 19 C 0.07 1.96 5.43 -17.82 -0.10 1.86 16 20 N -0.87 -23.70 12.65 55.43 0.70 -23.00 16 21 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 22 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 C -0.21 -4.28 9.93 -26.70 -0.27 -4.54 16 26 C -0.14 -3.09 9.17 -26.70 -0.24 -3.34 16 27 C -0.07 -0.95 8.74 -39.10 -0.34 -1.30 16 28 C -0.11 -1.42 6.38 -105.17 -0.67 -2.09 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.21 0.95 8.06 -52.48 -0.42 0.52 16 33 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 34 H 0.14 1.05 8.06 -52.49 -0.42 0.62 16 35 H 0.42 4.57 8.32 -40.82 -0.34 4.23 16 36 H 0.42 8.10 7.50 -40.82 -0.31 7.79 16 37 H 0.07 1.78 8.14 -51.93 -0.42 1.36 16 38 H 0.05 1.01 8.06 -51.93 -0.42 0.59 16 39 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 40 H 0.08 1.61 8.14 -51.92 -0.42 1.19 16 41 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 43 H 0.09 2.11 8.14 -51.93 -0.42 1.68 16 44 H 0.15 2.13 6.26 -52.49 -0.33 1.80 16 LS Contribution 383.78 15.07 5.78 5.78 Total: -1.00 -30.26 383.78 -8.19 -38.44 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -5.59 Total: 12.00 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -3.88 Total: -5.91 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: 0.32 Total: -44.60 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: 0.21 Total: -21.28 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.26 -8.19 -38.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430353301.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.371 kcal (2) G-P(sol) polarization free energy of solvation -30.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds