Wall clock time and date at job start Wed Apr 1 2020 00:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34807 * 125.90511 * 2 1 4 4 C 1.40985 * 107.48280 * 180.23640 * 3 2 1 5 5 C 1.34810 * 107.48567 * 359.75928 * 4 3 2 6 6 C 1.50703 * 125.90242 * 180.02562 * 5 4 3 7 7 N 1.36641 * 108.19199 * 359.97438 * 5 4 3 8 8 C 1.39776 * 125.67756 * 179.97438 * 7 5 4 9 9 C 1.39078 * 119.91797 * 115.00092 * 8 7 5 10 10 C 1.37687 * 120.08423 * 180.30121 * 9 8 7 11 11 C 1.39778 * 119.91651 * 359.45131 * 10 9 8 12 12 C 1.47508 * 120.08460 * 180.27410 * 11 10 9 13 13 O 1.21500 * 119.99964 * 180.27418 * 12 11 10 14 14 O 1.34737 * 120.00249 * 0.27480 * 12 11 10 15 15 C 1.45197 * 117.00417 * 180.02562 * 14 12 11 16 16 C 1.50705 * 109.47311 * 180.02562 * 15 14 12 17 17 O 1.21287 * 119.99797 * 359.97438 * 16 15 14 18 18 N 1.34773 * 119.99882 * 180.02562 * 16 15 14 19 19 C 1.37103 * 119.99983 * 179.97438 * 18 16 15 20 20 H 1.07992 * 119.99588 * 359.97438 * 19 18 16 21 21 C 1.38951 * 120.00114 * 179.97438 * 19 18 16 22 22 N 1.31419 * 119.99672 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00033 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47183 * 59.99459 * 23 21 19 25 25 H 1.48501 * 109.47231 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.46651 * 299.99549 * 23 21 19 27 27 C 1.39780 * 119.83080 * 0.54840 * 11 10 9 28 28 C 1.37687 * 119.91521 * 359.72437 * 27 11 10 29 29 H 1.09002 * 109.47473 * 270.17787 * 1 2 3 30 30 H 1.08999 * 109.47585 * 30.18125 * 1 2 3 31 31 H 1.09001 * 109.47671 * 150.18048 * 1 2 3 32 32 H 1.08006 * 126.25615 * 359.97438 * 3 2 1 33 33 H 1.08003 * 126.25708 * 179.75650 * 4 3 2 34 34 H 1.08998 * 109.46972 * 269.96836 * 6 5 4 35 35 H 1.08993 * 109.47101 * 29.96849 * 6 5 4 36 36 H 1.08996 * 109.47069 * 149.97265 * 6 5 4 37 37 H 1.08002 * 119.95336 * 0.02562 * 9 8 7 38 38 H 1.08004 * 120.03911 * 179.72435 * 10 9 8 39 39 H 1.08999 * 109.46703 * 299.99743 * 15 14 12 40 40 H 1.08992 * 109.47250 * 59.99743 * 15 14 12 41 41 H 0.96999 * 120.00107 * 359.97438 * 18 16 15 42 42 H 0.97004 * 119.99632 * 180.02562 * 22 21 19 43 43 H 1.07996 * 120.04200 * 179.71156 * 27 11 10 44 44 H 1.08003 * 119.95752 * 179.97438 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2975 1.0919 0.0000 4 6 3.6351 0.6464 -0.0055 5 6 3.6131 -0.7015 -0.0033 6 6 4.8192 -1.6051 -0.0070 7 7 2.3082 -1.1068 0.0040 8 6 1.8665 -2.4330 0.0078 9 6 1.1697 -2.9289 1.1045 10 6 0.7384 -4.2364 1.1145 11 6 0.9917 -5.0625 0.0158 12 6 0.5261 -6.4621 0.0201 13 8 0.7514 -7.1802 -0.9338 14 8 -0.1492 -6.9443 1.0816 15 6 -0.5763 -8.3305 1.0171 16 6 -1.3108 -8.6894 2.2832 17 8 -1.4592 -7.8586 3.1543 18 7 -1.8018 -9.9336 2.4477 19 6 -2.4696 -10.2603 3.5997 20 1 -2.6017 -9.5206 4.3754 21 6 -2.9762 -11.5430 3.7692 22 7 -2.8158 -12.4428 2.8250 23 14 -3.8854 -11.9882 5.3391 24 1 -5.0737 -11.1103 5.4889 25 1 -4.3230 -13.4057 5.2727 26 1 -2.9827 -11.8023 6.5034 27 6 1.6923 -4.5605 -1.0846 28 6 2.1253 -3.2535 -1.0850 29 1 -0.3634 0.0032 1.0277 30 1 -0.3634 0.8883 -0.5166 31 1 -0.3634 -0.8916 -0.5110 32 1 1.9667 2.1201 -0.0004 33 1 4.5163 1.2708 -0.0107 34 1 5.1053 -1.8250 -1.0355 35 1 5.6459 -1.1096 0.5020 36 1 4.5787 -2.5342 0.5097 37 1 0.9705 -2.2887 1.9513 38 1 0.2012 -4.6220 1.9685 39 1 -1.2385 -8.4672 0.1622 40 1 0.2960 -8.9747 0.9077 41 1 -1.6827 -10.5981 1.7512 42 1 -3.1698 -13.3382 2.9432 43 1 1.8940 -5.1970 -1.9334 44 1 2.6671 -2.8650 -1.9347 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731237991.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:40:14 Heat of formation + Delta-G solvation = -45.674238 kcal Electronic energy + Delta-G solvation = -27877.461975 eV Core-core repulsion = 23760.850385 eV Total energy + Delta-G solvation = -4116.611590 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.141 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.03897 -40.54481 -38.95249 -38.07742 -36.17654 -34.04513 -33.58586 -32.98263 -31.52806 -31.41415 -29.84862 -29.46081 -28.23284 -24.96302 -24.46821 -24.07928 -23.19588 -21.31834 -20.58498 -19.75023 -19.62901 -18.19793 -18.11791 -17.12174 -16.79821 -16.39753 -15.94356 -15.72039 -15.03556 -14.75304 -14.66558 -14.32432 -14.25719 -14.07926 -13.97186 -13.89608 -13.54964 -13.49119 -13.11647 -12.96733 -12.72811 -12.60907 -12.44877 -12.28761 -12.15567 -12.06702 -11.77565 -11.65080 -11.48224 -11.14251 -10.63058 -10.51701 -10.50102 -10.32339 -9.66261 -9.62992 -9.51299 -8.79155 -8.57570 -8.12142 -8.11531 -6.53271 -3.95570 0.15303 0.89014 1.83799 2.33219 2.48172 2.57339 2.71702 3.12860 3.20748 3.25182 3.34423 3.69475 4.07167 4.34585 4.39354 4.45074 4.49922 4.70466 4.83254 4.86850 4.91083 5.02053 5.04720 5.11413 5.21890 5.23310 5.25357 5.29739 5.41338 5.48907 5.54804 5.60875 5.63674 5.63801 5.75444 5.82169 5.92587 5.99613 6.01967 6.08904 6.25616 6.47540 6.76024 6.91822 7.19863 7.44340 7.70766 7.90673 8.44233 9.03247 9.35134 9.84667 10.63715 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.023023 B = 0.001854 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.903769 B =15101.762450 C =15693.585633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.022 3.978 3 C -0.192 4.192 4 C -0.192 4.192 5 C 0.020 3.980 6 C -0.086 4.086 7 N -0.406 5.406 8 C 0.147 3.853 9 C -0.123 4.123 10 C -0.043 4.043 11 C -0.112 4.112 12 C 0.504 3.496 13 O -0.507 6.507 14 O -0.320 6.320 15 C 0.061 3.939 16 C 0.438 3.562 17 O -0.577 6.577 18 N -0.551 5.551 19 C -0.304 4.304 20 H 0.106 0.894 21 C 0.025 3.975 22 N -0.896 5.896 23 Si 0.935 3.065 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.272 1.272 27 C -0.042 4.042 28 C -0.125 4.125 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.138 0.862 38 H 0.156 0.844 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.395 0.605 42 H 0.275 0.725 43 H 0.148 0.852 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.637 21.665 -9.210 26.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.086 4.086 3 C -0.217 4.217 4 C -0.216 4.216 5 C -0.088 4.088 6 C -0.143 4.143 7 N -0.082 5.082 8 C 0.057 3.943 9 C -0.142 4.142 10 C -0.062 4.062 11 C -0.113 4.113 12 C 0.348 3.652 13 O -0.397 6.397 14 O -0.234 6.234 15 C -0.016 4.016 16 C 0.222 3.778 17 O -0.461 6.461 18 N -0.188 5.188 19 C -0.433 4.433 20 H 0.124 0.876 21 C -0.177 4.177 22 N -0.537 5.537 23 Si 0.762 3.238 24 H -0.197 1.197 25 H -0.209 1.209 26 H -0.197 1.197 27 C -0.061 4.061 28 C -0.144 4.144 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.156 0.844 33 H 0.155 0.845 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.156 0.844 38 H 0.174 0.826 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.229 0.771 42 H 0.085 0.915 43 H 0.165 0.835 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 11.412 21.460 -8.883 25.877 hybrid contribution -0.355 -0.842 0.163 0.928 sum 11.057 20.618 -8.719 24.968 Atomic orbital electron populations 1.20343 0.87989 1.03258 1.02825 1.20482 0.93502 0.85048 1.09595 1.20695 0.92688 0.97419 1.10861 1.20692 0.97436 0.92664 1.10817 1.20465 0.83895 0.94641 1.09795 1.20331 0.93390 0.97986 1.02616 1.41400 1.05795 1.02881 1.58103 1.17924 0.98263 0.83351 0.94740 1.21210 0.99528 0.95981 0.97514 1.21597 0.94873 0.91986 0.97715 1.19286 1.03580 0.91425 0.96992 1.21061 0.75543 0.87911 0.80660 1.90838 1.54289 1.59337 1.35266 1.86582 1.65798 1.30004 1.41024 1.22800 1.00141 0.78804 0.99847 1.19277 0.85913 0.84345 0.88238 1.90556 1.62456 1.49071 1.44024 1.41694 1.48716 1.09366 1.19036 1.19675 1.30895 0.97026 0.95670 0.87640 1.25324 0.97843 0.95351 0.99218 1.69610 1.45675 1.04914 1.33465 0.85846 0.79653 0.77372 0.80952 1.19742 1.20850 1.19737 1.21170 0.93233 0.94496 0.97216 1.21087 1.02118 0.93558 0.97652 0.90897 0.90111 0.91713 0.84442 0.84460 0.91072 0.90109 0.91701 0.84400 0.82641 0.89347 0.89341 0.77125 0.91536 0.83457 0.84486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.67 9.94 36.00 0.36 -0.31 16 2 C 0.02 0.21 6.81 -81.67 -0.56 -0.34 16 3 C -0.19 -1.83 10.76 -39.76 -0.43 -2.26 16 4 C -0.19 -1.81 10.76 -39.76 -0.43 -2.24 16 5 C 0.02 0.19 6.80 -81.66 -0.56 -0.36 16 6 C -0.09 -0.63 9.93 36.01 0.36 -0.27 16 7 N -0.41 -4.12 2.78 -52.54 -0.15 -4.27 16 8 C 0.15 1.47 4.65 -83.61 -0.39 1.08 16 9 C -0.12 -1.24 9.71 -39.47 -0.38 -1.62 16 10 C -0.04 -0.49 9.61 -39.21 -0.38 -0.87 16 11 C -0.11 -1.39 5.87 -104.97 -0.62 -2.00 16 12 C 0.50 7.86 7.89 34.51 0.27 8.13 16 13 O -0.51 -8.62 16.13 -19.27 -0.31 -8.93 16 14 O -0.32 -5.75 9.00 -47.27 -0.43 -6.17 16 15 C 0.06 1.14 5.95 36.01 0.21 1.35 16 16 C 0.44 10.30 7.86 -10.98 -0.09 10.22 16 17 O -0.58 -15.60 16.08 -14.11 -0.23 -15.83 16 18 N -0.55 -13.69 5.29 -10.96 -0.06 -13.74 16 19 C -0.30 -8.25 9.68 -14.93 -0.14 -8.40 16 20 H 0.11 2.98 7.16 -52.49 -0.38 2.61 16 21 C 0.03 0.66 5.50 -17.46 -0.10 0.56 16 22 N -0.90 -23.74 13.05 55.50 0.72 -23.02 16 23 Si 0.94 20.46 29.55 -169.99 -5.02 15.44 16 24 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 25 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 26 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 27 C -0.04 -0.44 9.58 -39.21 -0.38 -0.81 16 28 C -0.13 -1.15 9.69 -39.47 -0.38 -1.53 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.52 7.83 -51.93 -0.41 0.12 16 32 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 33 H 0.14 1.04 8.06 -52.48 -0.42 0.61 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.51 7.83 -51.93 -0.41 0.10 16 37 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 38 H 0.16 1.85 7.60 -52.48 -0.40 1.45 16 39 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 40 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 41 H 0.40 9.30 7.90 -40.82 -0.32 8.97 16 42 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 43 H 0.15 1.39 7.64 -52.49 -0.40 0.99 16 44 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 LS Contribution 389.55 15.07 5.87 5.87 Total: -1.00 -32.25 389.55 -8.89 -41.13 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -5.67 Total: 9.19 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -3.62 Total: 0.33 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: 0.52 Total: -41.03 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -0.96 Total: -30.93 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.25 -8.89 -41.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731237991.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.541 kcal (2) G-P(sol) polarization free energy of solvation -32.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds