Wall clock time and date at job start Wed Apr 1 2020 00:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34807 * 125.90511 * 2 1 4 4 C 1.40985 * 107.48280 * 180.23640 * 3 2 1 5 5 C 1.34810 * 107.48567 * 359.75928 * 4 3 2 6 6 C 1.50703 * 125.90242 * 180.02562 * 5 4 3 7 7 N 1.36641 * 108.19199 * 359.97438 * 5 4 3 8 8 C 1.39776 * 125.67756 * 179.97438 * 7 5 4 9 9 C 1.39078 * 119.91797 * 115.00092 * 8 7 5 10 10 C 1.37687 * 120.08423 * 180.30121 * 9 8 7 11 11 C 1.39778 * 119.91651 * 359.45131 * 10 9 8 12 12 C 1.47508 * 120.08460 * 180.27410 * 11 10 9 13 13 O 1.21500 * 119.99964 * 180.27418 * 12 11 10 14 14 O 1.34737 * 120.00249 * 0.27480 * 12 11 10 15 15 C 1.45197 * 117.00417 * 180.02562 * 14 12 11 16 16 C 1.50705 * 109.47311 * 180.02562 * 15 14 12 17 17 O 1.21287 * 119.99797 * 359.97438 * 16 15 14 18 18 N 1.34773 * 119.99882 * 180.02562 * 16 15 14 19 19 C 1.37103 * 119.99983 * 179.97438 * 18 16 15 20 20 H 1.07992 * 119.99588 * 359.97438 * 19 18 16 21 21 C 1.38951 * 120.00114 * 179.97438 * 19 18 16 22 22 N 1.31419 * 119.99672 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00033 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47183 * 59.99459 * 23 21 19 25 25 H 1.48501 * 109.47231 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.46651 * 299.99549 * 23 21 19 27 27 C 1.39780 * 119.83080 * 0.54840 * 11 10 9 28 28 C 1.37687 * 119.91521 * 359.72437 * 27 11 10 29 29 H 1.09002 * 109.47473 * 270.17787 * 1 2 3 30 30 H 1.08999 * 109.47585 * 30.18125 * 1 2 3 31 31 H 1.09001 * 109.47671 * 150.18048 * 1 2 3 32 32 H 1.08006 * 126.25615 * 359.97438 * 3 2 1 33 33 H 1.08003 * 126.25708 * 179.75650 * 4 3 2 34 34 H 1.08998 * 109.46972 * 269.96836 * 6 5 4 35 35 H 1.08993 * 109.47101 * 29.96849 * 6 5 4 36 36 H 1.08996 * 109.47069 * 149.97265 * 6 5 4 37 37 H 1.08002 * 119.95336 * 0.02562 * 9 8 7 38 38 H 1.08004 * 120.03911 * 179.72435 * 10 9 8 39 39 H 1.08999 * 109.46703 * 299.99743 * 15 14 12 40 40 H 1.08992 * 109.47250 * 59.99743 * 15 14 12 41 41 H 0.96999 * 120.00107 * 359.97438 * 18 16 15 42 42 H 0.97004 * 119.99632 * 180.02562 * 22 21 19 43 43 H 1.07996 * 120.04200 * 179.71156 * 27 11 10 44 44 H 1.08003 * 119.95752 * 179.97438 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2975 1.0919 0.0000 4 6 3.6351 0.6464 -0.0055 5 6 3.6131 -0.7015 -0.0033 6 6 4.8192 -1.6051 -0.0070 7 7 2.3082 -1.1068 0.0040 8 6 1.8665 -2.4330 0.0078 9 6 1.1697 -2.9289 1.1045 10 6 0.7384 -4.2364 1.1145 11 6 0.9917 -5.0625 0.0158 12 6 0.5261 -6.4621 0.0201 13 8 0.7514 -7.1802 -0.9338 14 8 -0.1492 -6.9443 1.0816 15 6 -0.5763 -8.3305 1.0171 16 6 -1.3108 -8.6894 2.2832 17 8 -1.4592 -7.8586 3.1543 18 7 -1.8018 -9.9336 2.4477 19 6 -2.4696 -10.2603 3.5997 20 1 -2.6017 -9.5206 4.3754 21 6 -2.9762 -11.5430 3.7692 22 7 -2.8158 -12.4428 2.8250 23 14 -3.8854 -11.9882 5.3391 24 1 -5.0737 -11.1103 5.4889 25 1 -4.3230 -13.4057 5.2727 26 1 -2.9827 -11.8023 6.5034 27 6 1.6923 -4.5605 -1.0846 28 6 2.1253 -3.2535 -1.0850 29 1 -0.3634 0.0032 1.0277 30 1 -0.3634 0.8883 -0.5166 31 1 -0.3634 -0.8916 -0.5110 32 1 1.9667 2.1201 -0.0004 33 1 4.5163 1.2708 -0.0107 34 1 5.1053 -1.8250 -1.0355 35 1 5.6459 -1.1096 0.5020 36 1 4.5787 -2.5342 0.5097 37 1 0.9705 -2.2887 1.9513 38 1 0.2012 -4.6220 1.9685 39 1 -1.2385 -8.4672 0.1622 40 1 0.2960 -8.9747 0.9077 41 1 -1.6827 -10.5981 1.7512 42 1 -3.1698 -13.3382 2.9432 43 1 1.8940 -5.1970 -1.9334 44 1 2.6671 -2.8650 -1.9347 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731237991.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:40:11 Heat of formation + Delta-G solvation = -61.421638 kcal Electronic energy + Delta-G solvation = -27878.144834 eV Core-core repulsion = 23760.850385 eV Total energy + Delta-G solvation = -4117.294449 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.141 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.76096 -41.77951 -40.23235 -39.58907 -37.56194 -36.04516 -34.40712 -33.61542 -33.42775 -32.33964 -30.87912 -30.05320 -29.65768 -26.71554 -25.21812 -25.09566 -24.03372 -22.43016 -21.46384 -21.27638 -20.52018 -20.08901 -19.38231 -18.23631 -17.77680 -17.76128 -17.46799 -16.78405 -16.58402 -15.92151 -15.80275 -15.75737 -15.39946 -15.23678 -14.87222 -14.69871 -14.61093 -14.16315 -14.12755 -14.05981 -13.75489 -13.58338 -13.56224 -13.38788 -13.32050 -13.03380 -12.94043 -12.78758 -12.49654 -12.41658 -12.26915 -12.13655 -11.92893 -11.86867 -11.58026 -10.53412 -10.49658 -10.32298 -10.12978 -9.54901 -8.80057 -8.53112 -6.03836 -0.76237 0.08194 1.04747 1.24092 1.31533 1.37133 1.43672 1.54798 1.78270 1.85826 2.02652 2.28602 2.43164 2.97743 3.12402 3.47460 3.61345 3.64048 3.73751 3.98384 4.00009 4.08024 4.12344 4.13281 4.20360 4.29190 4.46234 4.47133 4.56808 4.71162 4.73445 4.77061 4.78663 4.91736 5.00145 5.05702 5.07366 5.10497 5.19287 5.30546 5.36056 5.41106 5.45013 5.87572 6.08625 6.22144 6.41147 6.48493 6.52143 7.01636 7.38471 7.91642 8.63485 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.023023 B = 0.001854 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.903769 B =15101.762450 C =15693.585633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.005 3.995 3 C -0.202 4.202 4 C -0.203 4.203 5 C 0.007 3.993 6 C -0.084 4.084 7 N -0.414 5.414 8 C 0.152 3.848 9 C -0.121 4.121 10 C -0.044 4.044 11 C -0.129 4.129 12 C 0.507 3.493 13 O -0.523 6.523 14 O -0.337 6.337 15 C 0.072 3.928 16 C 0.436 3.564 17 O -0.617 6.617 18 N -0.557 5.557 19 C -0.339 4.339 20 H 0.085 0.915 21 C -0.009 4.009 22 N -0.914 5.914 23 Si 0.998 3.002 24 H -0.270 1.270 25 H -0.270 1.270 26 H -0.270 1.270 27 C -0.033 4.033 28 C -0.116 4.116 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.058 0.942 32 H 0.152 0.848 33 H 0.153 0.847 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.057 0.943 37 H 0.146 0.854 38 H 0.145 0.855 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.400 0.600 42 H 0.281 0.719 43 H 0.158 0.842 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.316 22.502 -9.898 27.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.102 4.102 3 C -0.226 4.226 4 C -0.227 4.227 5 C -0.101 4.101 6 C -0.142 4.142 7 N -0.091 5.091 8 C 0.062 3.938 9 C -0.140 4.140 10 C -0.063 4.063 11 C -0.130 4.130 12 C 0.353 3.647 13 O -0.414 6.414 14 O -0.252 6.252 15 C -0.005 4.005 16 C 0.223 3.777 17 O -0.504 6.504 18 N -0.194 5.194 19 C -0.467 4.467 20 H 0.103 0.897 21 C -0.210 4.210 22 N -0.554 5.554 23 Si 0.821 3.179 24 H -0.195 1.195 25 H -0.194 1.194 26 H -0.195 1.195 27 C -0.051 4.051 28 C -0.134 4.134 29 H 0.096 0.904 30 H 0.114 0.886 31 H 0.077 0.923 32 H 0.170 0.830 33 H 0.170 0.830 34 H 0.101 0.899 35 H 0.112 0.888 36 H 0.076 0.924 37 H 0.164 0.836 38 H 0.163 0.837 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.235 0.765 42 H 0.090 0.910 43 H 0.175 0.825 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 12.105 22.296 -9.600 27.126 hybrid contribution -0.500 -0.971 0.334 1.142 sum 11.605 21.325 -9.266 25.986 Atomic orbital electron populations 1.20388 0.86888 1.03683 1.03273 1.20874 0.94433 0.85124 1.09794 1.21002 0.92890 0.98155 1.10590 1.21002 0.98060 0.92951 1.10661 1.20907 0.84258 0.95275 1.09644 1.20396 0.92936 0.97334 1.03490 1.41526 1.06182 1.02808 1.58550 1.18038 0.97503 0.83593 0.94663 1.21232 0.99341 0.95399 0.97994 1.21479 0.95099 0.92484 0.97226 1.19213 1.05464 0.89878 0.98444 1.21520 0.74661 0.88851 0.79662 1.90821 1.55045 1.60006 1.35568 1.86581 1.66578 1.29494 1.42503 1.22574 1.00774 0.79915 0.97265 1.20058 0.84963 0.83368 0.89299 1.90522 1.63794 1.50068 1.45974 1.41730 1.48887 1.10073 1.18738 1.19682 1.33057 0.97501 0.96508 0.89704 1.26132 0.97934 0.94698 1.02218 1.69670 1.45752 1.05257 1.34735 0.84912 0.78324 0.77563 0.77103 1.19495 1.19428 1.19497 1.21258 0.92291 0.94935 0.96638 1.21235 1.01476 0.92824 0.97899 0.90429 0.88616 0.92336 0.83045 0.82959 0.89858 0.88777 0.92416 0.83585 0.83734 0.87317 0.87308 0.76531 0.90957 0.82454 0.82533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.19 9.94 71.23 0.71 -0.49 16 2 C 0.01 0.10 6.81 41.02 0.28 0.38 16 3 C -0.20 -3.53 10.76 22.16 0.24 -3.29 16 4 C -0.20 -3.48 10.76 22.16 0.24 -3.24 16 5 C 0.01 0.12 6.80 41.02 0.28 0.40 16 6 C -0.08 -1.06 9.93 71.24 0.71 -0.36 16 7 N -0.41 -7.78 2.78 -320.15 -0.89 -8.66 16 8 C 0.15 2.81 4.65 38.28 0.18 2.99 16 9 C -0.12 -2.33 9.71 22.34 0.22 -2.11 16 10 C -0.04 -1.00 9.61 22.51 0.22 -0.78 16 11 C -0.13 -3.13 5.87 -20.09 -0.12 -3.24 16 12 C 0.51 15.64 7.89 70.27 0.55 16.19 16 13 O -0.52 -17.35 16.13 19.84 0.32 -17.03 16 14 O -0.34 -12.15 9.00 -50.08 -0.45 -12.60 16 15 C 0.07 2.64 5.95 71.24 0.42 3.07 16 16 C 0.44 20.94 7.86 87.66 0.69 21.63 16 17 O -0.62 -34.37 16.08 15.75 0.25 -34.12 16 18 N -0.56 -28.17 5.29 -306.99 -1.62 -29.79 16 19 C -0.34 -18.78 9.68 84.04 0.81 -17.96 16 20 H 0.08 4.97 7.16 -2.91 -0.02 4.95 16 21 C -0.01 -0.46 5.50 84.93 0.47 0.00 16 22 N -0.91 -48.08 13.05 21.66 0.28 -47.80 16 23 Si 1.00 41.62 29.55 68.60 2.03 43.65 16 24 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 25 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 26 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 27 C -0.03 -0.62 9.58 22.51 0.22 -0.41 16 28 C -0.12 -1.90 9.69 22.34 0.22 -1.68 16 29 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.06 0.89 7.83 -2.39 -0.02 0.87 16 32 H 0.15 2.07 8.06 -2.91 -0.02 2.04 16 33 H 0.15 2.01 8.06 -2.91 -0.02 1.98 16 34 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.06 0.81 7.83 -2.39 -0.02 0.79 16 37 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 38 H 0.14 3.58 7.60 -2.91 -0.02 3.56 16 39 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 40 H 0.11 3.56 8.14 -2.39 -0.02 3.55 16 41 H 0.40 19.05 7.90 -92.71 -0.73 18.31 16 42 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 43 H 0.16 2.68 7.64 -2.91 -0.02 2.66 16 44 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -69.03 389.55 6.55 -62.48 By element: Atomic # 1 Polarization: 32.50 SS G_CDS: 0.31 Total: 32.80 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: 6.32 Total: 11.08 kcal Atomic # 7 Polarization: -84.02 SS G_CDS: -2.23 Total: -86.25 kcal Atomic # 8 Polarization: -63.88 SS G_CDS: 0.12 Total: -63.76 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -69.03 6.55 -62.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731237991.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.057 kcal (2) G-P(sol) polarization free energy of solvation -69.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds