Wall clock time and date at job start Wed Apr 1 2020 00:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36352 * 120.30151 * 2 1 4 4 C 1.40632 * 119.23705 * 180.24754 * 3 2 1 5 5 N 1.40390 * 120.08454 * 179.74395 * 4 3 2 6 6 C 1.34774 * 120.00182 * 301.20539 * 5 4 3 7 7 O 1.21301 * 119.99981 * 4.89312 * 6 5 4 8 8 C 1.50700 * 120.00187 * 184.89559 * 6 5 4 9 9 C 1.50703 * 109.47186 * 179.97438 * 8 6 5 10 10 C 1.38315 * 119.96590 * 270.02033 * 9 8 6 11 11 C 1.38281 * 120.14142 * 180.02562 * 10 9 8 12 12 C 1.38129 * 120.06540 * 359.67558 * 11 10 9 13 13 C 1.38863 * 119.92949 * 0.60293 * 12 11 10 14 14 O 1.35750 * 120.06718 * 179.69915 * 13 12 11 15 15 C 1.34831 * 117.00261 * 353.87213 * 14 13 12 16 16 H 1.08000 * 119.99386 * 5.05879 * 15 14 13 17 17 C 1.38654 * 119.99747 * 185.05730 * 15 14 13 18 18 N 1.31558 * 119.99319 * 179.97438 * 17 15 14 19 19 Si 1.86791 * 120.00278 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47217 * 89.99845 * 19 17 15 21 21 H 1.48502 * 109.47275 * 209.99647 * 19 17 15 22 22 H 1.48502 * 109.47308 * 329.99841 * 19 17 15 23 23 C 1.38083 * 119.96205 * 89.99925 * 9 8 6 24 24 C 1.35888 * 119.83092 * 359.46276 * 4 3 2 25 25 N 1.35942 * 120.59052 * 0.26073 * 24 4 3 26 26 C 1.46505 * 119.60435 * 180.02562 * 25 24 4 27 27 C 1.34634 * 120.78739 * 359.97438 * 25 24 4 28 28 O 1.22097 * 119.91998 * 180.02562 * 27 25 24 29 29 H 1.09002 * 109.47008 * 270.31175 * 1 2 3 30 30 H 1.09005 * 109.47144 * 30.30745 * 1 2 3 31 31 H 1.08993 * 109.47479 * 150.30645 * 1 2 3 32 32 H 1.08002 * 120.38520 * 359.96407 * 3 2 1 33 33 H 0.96998 * 120.00192 * 121.20416 * 5 4 3 34 34 H 1.08993 * 109.47269 * 59.99970 * 8 6 5 35 35 H 1.09004 * 109.47035 * 299.99763 * 8 6 5 36 36 H 1.08004 * 119.93295 * 359.97438 * 10 9 8 37 37 H 1.07997 * 119.96844 * 179.97438 * 11 10 9 38 38 H 1.07999 * 120.03919 * 180.32002 * 12 11 10 39 39 H 0.97004 * 119.99491 * 180.02562 * 18 17 15 40 40 H 1.07994 * 120.04168 * 0.04396 * 23 9 8 41 41 H 1.07991 * 119.70544 * 180.23086 * 24 4 3 42 42 H 1.09004 * 109.46970 * 359.97438 * 26 25 24 43 43 H 1.08992 * 109.46983 * 119.99759 * 26 25 24 44 44 H 1.09000 * 109.47069 * 239.99837 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1950 1.1772 0.0000 4 6 3.6010 1.1511 -0.0053 5 7 4.3272 2.3526 -0.0108 6 6 4.1544 3.2399 -1.0105 7 8 3.3087 3.0424 -1.8573 8 6 5.0120 4.4773 -1.0763 9 6 4.6212 5.2960 -2.2797 10 6 5.2449 5.0790 -3.4951 11 6 4.8895 5.8284 -4.6015 12 6 3.9051 6.7919 -4.4976 13 6 3.2812 7.0161 -3.2774 14 8 2.3177 7.9665 -3.1707 15 6 2.1019 8.7435 -4.2513 16 1 2.6256 8.5423 -5.1742 17 6 1.2078 9.8007 -4.1775 18 7 0.9977 10.5591 -5.2317 19 14 0.3028 10.1488 -2.5810 20 1 1.1004 11.0905 -1.7550 21 1 -1.0195 10.7535 -2.8833 22 1 0.1078 8.8794 -1.8355 23 6 3.6405 6.2615 -2.1679 24 6 4.2550 -0.0400 0.0007 25 7 3.5622 -1.2096 0.0065 26 6 4.2892 -2.4815 0.0135 27 6 2.2158 -1.2130 0.0069 28 8 1.6095 -2.2728 0.0126 29 1 -0.3633 0.0056 1.0277 30 1 -0.3634 0.8872 -0.5186 31 1 -0.3634 -0.8926 -0.5090 32 1 1.6662 2.1190 -0.0006 33 1 4.9533 2.5442 0.7048 34 1 6.0600 4.1891 -1.1582 35 1 4.8673 5.0682 -0.1719 36 1 6.0117 4.3232 -3.5800 37 1 5.3786 5.6570 -5.5490 38 1 3.6243 7.3734 -5.3632 39 1 0.3724 11.2989 -5.1800 40 1 3.1541 6.4308 -1.2187 41 1 5.3348 -0.0577 0.0004 42 1 5.3617 -2.2869 0.0125 43 1 4.0231 -3.0472 0.9063 44 1 4.0238 -3.0566 -0.8736 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760403485.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:44:52 Heat of formation + Delta-G solvation = -56.928547 kcal Electronic energy + Delta-G solvation = -28318.161501 eV Core-core repulsion = 24201.061887 eV Total energy + Delta-G solvation = -4117.099614 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.141 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.54205 -41.17024 -40.51054 -38.50734 -37.96139 -36.55597 -35.22001 -34.47198 -33.51453 -31.34870 -30.94818 -28.89816 -28.27929 -27.97289 -27.14055 -24.14721 -23.72429 -23.23868 -22.39504 -21.36019 -19.68593 -19.26699 -18.68890 -18.36981 -17.91581 -17.73068 -17.09737 -16.83901 -16.73396 -16.35599 -15.98831 -15.67971 -15.50056 -15.13190 -14.96943 -14.78560 -14.57164 -14.38465 -14.28736 -14.12368 -13.90301 -13.72314 -13.45363 -13.25644 -13.03172 -13.00584 -12.76674 -12.70494 -12.50295 -12.42057 -12.30954 -11.91794 -11.29884 -11.20827 -11.06705 -11.00190 -10.89133 -10.38587 -9.64618 -9.04031 -8.75605 -8.49705 -6.22313 -0.23908 0.48723 0.65092 0.73719 1.30262 1.34784 1.48120 1.51522 1.71806 2.24621 2.28181 2.51982 2.79917 3.07635 3.16591 3.60932 3.67760 3.79547 3.88462 3.98291 4.11135 4.20345 4.32852 4.34164 4.38515 4.41676 4.49427 4.58997 4.70014 4.71203 4.76150 4.77110 4.79185 4.99090 5.01255 5.03859 5.18533 5.28298 5.34355 5.41397 5.67551 5.68533 5.75544 5.78729 5.93685 5.94899 6.28002 6.55135 6.84760 6.87915 7.33703 7.60328 8.62194 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.015215 B = 0.002354 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.826809 B =11892.506202 C =12973.786471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.233 4.233 3 C -0.007 4.007 4 C 0.023 3.977 5 N -0.650 5.650 6 C 0.517 3.483 7 O -0.564 6.564 8 C -0.085 4.085 9 C -0.029 4.029 10 C -0.168 4.168 11 C -0.081 4.081 12 C -0.243 4.243 13 C 0.116 3.884 14 O -0.248 6.248 15 C -0.398 4.398 16 H 0.078 0.922 17 C 0.008 3.992 18 N -0.925 5.925 19 Si 0.972 3.028 20 H -0.261 1.261 21 H -0.268 1.268 22 H -0.266 1.266 23 C -0.180 4.180 24 C 0.140 3.860 25 N -0.488 5.488 26 C 0.060 3.940 27 C 0.503 3.497 28 O -0.593 6.593 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.125 0.875 33 H 0.433 0.567 34 H 0.153 0.847 35 H 0.133 0.867 36 H 0.152 0.848 37 H 0.137 0.863 38 H 0.103 0.897 39 H 0.284 0.716 40 H 0.124 0.876 41 H 0.221 0.779 42 H 0.137 0.863 43 H 0.080 0.920 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.835 -22.805 17.507 32.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.237 4.237 3 C -0.030 4.030 4 C -0.074 4.074 5 N -0.303 5.303 6 C 0.306 3.694 7 O -0.440 6.440 8 C -0.124 4.124 9 C -0.030 4.030 10 C -0.186 4.186 11 C -0.099 4.099 12 C -0.262 4.262 13 C 0.067 3.933 14 O -0.156 6.156 15 C -0.475 4.475 16 H 0.096 0.904 17 C -0.190 4.190 18 N -0.566 5.566 19 Si 0.794 3.206 20 H -0.186 1.186 21 H -0.193 1.193 22 H -0.190 1.190 23 C -0.199 4.199 24 C 0.011 3.989 25 N -0.197 5.197 26 C -0.080 4.080 27 C 0.306 3.694 28 O -0.479 6.479 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.143 0.857 33 H 0.274 0.726 34 H 0.171 0.829 35 H 0.151 0.849 36 H 0.170 0.830 37 H 0.155 0.845 38 H 0.121 0.879 39 H 0.094 0.906 40 H 0.142 0.858 41 H 0.238 0.762 42 H 0.156 0.844 43 H 0.099 0.901 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 14.669 -23.419 16.988 32.439 hybrid contribution -0.879 0.893 -0.181 1.266 sum 13.790 -22.526 16.807 31.306 Atomic orbital electron populations 1.20410 0.89035 1.02452 1.02686 1.20730 0.98458 0.91867 1.12691 1.21501 0.94273 0.97995 0.89220 1.16670 0.89926 0.86859 1.13896 1.42967 1.44611 1.15936 1.26809 1.21209 0.83423 0.84679 0.80102 1.90824 1.35638 1.76665 1.40906 1.20702 1.02006 0.92019 0.97686 1.19256 0.94051 0.93884 0.95773 1.21043 1.03613 1.02076 0.91901 1.21117 0.95056 0.93865 0.99878 1.21325 1.03017 1.04410 0.97450 1.19645 0.88664 0.89915 0.95031 1.83502 1.49957 1.42945 1.39147 1.20697 1.26717 1.09940 0.90132 0.90414 1.25301 0.97501 0.94218 1.02019 1.69738 1.36937 1.18943 1.30986 0.85196 0.78035 0.78994 0.78347 1.18569 1.19297 1.19012 1.20329 1.02412 1.00467 0.96707 1.22475 1.00212 0.82637 0.93614 1.45343 1.07304 1.09257 1.57791 1.22450 0.98795 0.82597 1.04188 1.17039 0.81888 0.90571 0.79910 1.90913 1.67592 1.33962 1.55480 0.90503 0.91159 0.92320 0.85742 0.72622 0.82912 0.84871 0.83034 0.84487 0.87909 0.90615 0.85791 0.76230 0.84443 0.90145 0.90911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.08 9.80 71.24 0.70 -1.38 16 2 C -0.23 -5.64 5.90 -19.75 -0.12 -5.76 16 3 C -0.01 -0.14 8.61 22.41 0.19 0.05 16 4 C 0.02 0.34 5.74 37.81 0.22 0.56 16 5 N -0.65 -6.51 5.29 -303.96 -1.61 -8.12 16 6 C 0.52 9.76 7.69 87.66 0.67 10.43 16 7 O -0.56 -18.01 15.22 -3.10 -0.05 -18.06 16 8 C -0.09 -1.24 5.83 29.10 0.17 -1.07 16 9 C -0.03 -0.83 4.37 -19.88 -0.09 -0.91 16 10 C -0.17 -4.80 9.70 22.30 0.22 -4.59 16 11 C -0.08 -2.85 10.04 22.25 0.22 -2.63 16 12 C -0.24 -11.11 9.17 22.39 0.21 -10.91 16 13 C 0.12 5.61 6.65 22.58 0.15 5.76 16 14 O -0.25 -13.90 8.59 -22.74 -0.20 -14.10 16 15 C -0.40 -24.23 9.95 67.92 0.68 -23.56 16 16 H 0.08 4.97 5.44 -2.91 -0.02 4.96 16 17 C 0.01 0.45 5.49 84.83 0.47 0.91 16 18 N -0.92 -56.49 13.96 21.61 0.30 -56.19 16 19 Si 0.97 46.45 28.62 68.60 1.96 48.41 16 20 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 21 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 22 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 23 C -0.18 -6.87 9.65 22.39 0.22 -6.66 16 24 C 0.14 1.22 10.22 83.51 0.85 2.07 16 25 N -0.49 -7.03 2.99 -673.86 -2.01 -9.05 16 26 C 0.06 0.43 10.05 127.77 1.28 1.72 16 27 C 0.50 12.29 7.40 84.81 0.63 12.91 16 28 O -0.59 -18.65 16.18 -5.63 -0.09 -18.74 16 29 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.07 1.57 8.09 -2.38 -0.02 1.55 16 31 H 0.06 1.51 7.61 -2.39 -0.02 1.49 16 32 H 0.12 2.95 7.98 -2.91 -0.02 2.93 16 33 H 0.43 0.19 8.83 -92.71 -0.82 -0.62 16 34 H 0.15 0.83 8.08 -2.39 -0.02 0.81 16 35 H 0.13 1.27 8.09 -2.38 -0.02 1.25 16 36 H 0.15 3.01 8.06 -2.91 -0.02 2.98 16 37 H 0.14 3.98 8.06 -2.91 -0.02 3.95 16 38 H 0.10 5.21 5.65 -2.91 -0.02 5.19 16 39 H 0.28 15.89 8.31 -92.71 -0.77 15.12 16 40 H 0.12 4.37 8.06 -2.91 -0.02 4.35 16 41 H 0.22 -0.57 7.82 -2.92 -0.02 -0.59 16 42 H 0.14 -0.36 7.72 -2.39 -0.02 -0.38 16 43 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -92.66 380.63 5.21 -87.45 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: 0.23 Total: 11.43 kcal Atomic # 6 Polarization: -29.71 SS G_CDS: 6.67 Total: -23.05 kcal Atomic # 7 Polarization: -70.03 SS G_CDS: -3.32 Total: -73.35 kcal Atomic # 8 Polarization: -50.56 SS G_CDS: -0.33 Total: -50.90 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 1.96 Total: 48.41 kcal Total: -92.66 5.21 -87.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760403485.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.524 kcal (2) G-P(sol) polarization free energy of solvation -92.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds