Wall clock time and date at job start Wed Apr 1 2020 01:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50699 * 109.47101 * 2 1 4 4 N 1.34627 * 125.89727 * 265.02824 * 3 2 1 5 5 H 0.96994 * 124.81210 * 359.96092 * 4 3 2 6 6 C 1.36434 * 110.37979 * 179.97438 * 4 3 2 7 7 C 1.34429 * 109.08592 * 0.02562 * 6 4 3 8 8 C 1.37844 * 125.89461 * 84.71487 * 3 2 1 9 9 C 1.47111 * 127.02481 * 0.02562 * 8 3 2 10 10 O 1.21550 * 119.99823 * 359.97438 * 9 8 3 11 11 O 1.34787 * 120.00135 * 179.97438 * 9 8 3 12 12 C 1.45194 * 116.99985 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.47125 * 180.02562 * 12 11 9 14 14 O 1.21269 * 120.00001 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99710 * 180.02562 * 13 12 11 16 16 C 1.39236 * 119.99559 * 175.70841 * 15 13 12 17 17 C 1.39478 * 119.83470 * 215.01072 * 16 15 13 18 18 C 1.36377 * 120.17033 * 179.76040 * 17 16 15 19 19 C 1.40861 * 119.82759 * 0.51495 * 18 17 16 20 20 C 1.41151 * 120.16556 * 179.71779 * 19 18 17 21 21 H 1.08001 * 120.00509 * 214.80904 * 20 19 18 22 22 C 1.39901 * 119.99890 * 34.80257 * 20 19 18 23 23 N 1.30873 * 120.00127 * 355.56170 * 22 20 19 24 24 Si 1.86803 * 120.00078 * 175.56269 * 22 20 19 25 25 H 1.48500 * 109.47220 * 59.99876 * 24 22 20 26 26 H 1.48504 * 109.47202 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.46833 * 299.99873 * 24 22 20 28 28 C 1.40871 * 119.67396 * 359.74245 * 19 18 17 29 29 C 1.36376 * 119.82460 * 359.97438 * 28 19 18 30 30 H 1.08993 * 109.47617 * 59.99713 * 1 2 3 31 31 H 1.09010 * 109.47100 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46987 * 299.99238 * 1 2 3 33 33 H 1.08993 * 109.47617 * 120.00287 * 2 1 3 34 34 H 1.09007 * 109.46987 * 240.00762 * 2 1 3 35 35 H 1.08000 * 125.45609 * 179.97438 * 6 4 3 36 36 H 1.08006 * 126.81539 * 179.97438 * 7 6 4 37 37 H 1.09006 * 109.47639 * 300.00486 * 12 11 9 38 38 H 1.09002 * 109.47406 * 60.00417 * 12 11 9 39 39 H 0.97001 * 120.00407 * 355.70664 * 15 13 12 40 40 H 1.08000 * 119.91340 * 0.02562 * 17 16 15 41 41 H 1.08002 * 120.08185 * 180.25341 * 18 17 16 42 42 H 0.96999 * 120.00041 * 179.97438 * 23 22 20 43 43 H 1.08000 * 120.08988 * 179.97438 * 28 19 18 44 44 H 1.08003 * 119.90954 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3845 2.1335 -1.0865 5 1 2.3530 1.8048 -1.9985 6 6 2.7923 3.3837 -0.7229 7 6 2.7108 3.5013 0.6138 8 6 2.2047 2.2170 1.1119 9 6 1.9390 1.8527 2.5122 10 8 1.5205 0.7440 2.7828 11 8 2.1597 2.7482 3.4951 12 6 1.8750 2.3200 4.8530 13 6 2.1789 3.4450 5.8086 14 8 2.5940 4.5035 5.3867 15 7 1.9893 3.2747 7.1321 16 6 2.3537 4.2811 8.0226 17 6 2.8583 3.9465 9.2792 18 6 3.2220 4.9266 10.1550 19 6 3.0767 6.2798 9.7919 20 6 3.4453 7.3000 10.6950 21 1 2.8835 8.2219 10.7270 22 6 4.5382 7.1170 11.5490 23 7 5.1652 5.9685 11.5723 24 14 5.1026 8.5119 12.6558 25 1 3.9961 8.8992 13.5673 26 1 6.2713 8.0666 13.4565 27 1 5.4895 9.6790 11.8231 28 6 2.5613 6.6100 8.5231 29 6 2.2074 5.6188 7.6558 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0278 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5138 0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 3.1278 4.1550 -1.4004 36 1 2.9635 4.3700 1.2037 37 1 0.8226 2.0482 4.9353 38 1 2.4935 1.4568 5.0991 39 1 1.5989 2.4512 7.4642 40 1 2.9653 2.9085 9.5576 41 1 3.6163 4.6658 11.1260 42 1 5.9233 5.8417 12.1641 43 1 2.4467 7.6453 8.2379 44 1 1.8117 5.8704 6.6829 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000803776746.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:36:14 Heat of formation + Delta-G solvation = -56.293750 kcal Electronic energy + Delta-G solvation = -27807.011549 eV Core-core repulsion = 23689.939463 eV Total energy + Delta-G solvation = -4117.072087 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.141 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.57952 -40.18996 -39.31553 -37.27115 -36.19527 -34.42177 -33.93989 -32.94767 -31.57197 -29.78499 -29.45797 -28.69611 -27.96935 -24.95564 -24.18032 -22.90135 -21.64120 -21.04414 -20.77707 -19.90297 -19.58894 -18.09429 -17.38532 -17.21205 -16.88439 -16.56002 -16.01535 -15.50552 -15.15520 -15.06814 -14.67419 -14.49448 -14.12358 -13.93912 -13.78881 -13.31222 -13.22631 -12.92123 -12.66508 -12.62105 -12.56245 -12.25866 -12.09951 -11.79561 -11.70080 -11.35869 -11.31700 -11.12809 -11.01382 -10.73353 -10.67682 -10.51454 -10.02036 -9.48389 -9.43660 -9.18613 -9.11696 -8.87453 -8.54064 -7.53659 -6.86632 -6.60684 -4.33373 1.26361 2.13104 2.33601 2.53783 2.91274 3.01844 3.09792 3.11101 3.13266 3.15538 3.33921 3.82780 3.99326 4.31896 4.60151 4.70510 4.71461 4.88057 4.95301 5.02520 5.10863 5.12016 5.14971 5.20670 5.47890 5.57416 5.66370 5.73146 5.86552 5.90474 6.20294 6.37874 6.43201 6.45825 6.61668 6.74064 6.92038 7.05240 7.07433 7.20289 7.30342 7.64772 7.72365 7.82241 7.89382 8.07110 8.23856 8.32509 8.61996 8.71271 8.93760 9.00417 10.30354 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.026697 B = 0.001804 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.555784 B =15520.387572 C =16142.844416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.065 4.065 3 C 0.118 3.882 4 N -0.546 5.546 5 H 0.418 0.582 6 C -0.027 4.027 7 C -0.137 4.137 8 C -0.224 4.224 9 C 0.542 3.458 10 O -0.523 6.523 11 O -0.323 6.323 12 C 0.054 3.946 13 C 0.499 3.501 14 O -0.508 6.508 15 N -0.647 5.647 16 C 0.003 3.997 17 C -0.119 4.119 18 C -0.142 4.142 19 C 0.100 3.900 20 C -0.460 4.460 21 H 0.076 0.924 22 C 0.069 3.931 23 N -0.811 5.811 24 Si 0.916 3.084 25 H -0.266 1.266 26 H -0.279 1.279 27 H -0.266 1.266 28 C -0.205 4.205 29 C -0.085 4.085 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.103 0.897 34 H 0.071 0.929 35 H 0.173 0.827 36 H 0.156 0.844 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.398 0.602 40 H 0.092 0.908 41 H 0.133 0.867 42 H 0.278 0.722 43 H 0.097 0.903 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.979 -11.854 -21.836 25.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.103 4.103 3 C -0.001 4.001 4 N -0.141 5.141 5 H 0.255 0.745 6 C -0.153 4.153 7 C -0.160 4.160 8 C -0.232 4.232 9 C 0.388 3.612 10 O -0.414 6.414 11 O -0.238 6.238 12 C -0.024 4.024 13 C 0.284 3.716 14 O -0.383 6.383 15 N -0.292 5.292 16 C -0.089 4.089 17 C -0.139 4.139 18 C -0.162 4.162 19 C 0.098 3.902 20 C -0.491 4.491 21 H 0.094 0.906 22 C -0.146 4.146 23 N -0.439 5.439 24 Si 0.741 3.259 25 H -0.191 1.191 26 H -0.204 1.204 27 H -0.191 1.191 28 C -0.225 4.225 29 C -0.105 4.105 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.122 0.878 34 H 0.089 0.911 35 H 0.190 0.810 36 H 0.174 0.826 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.231 0.769 40 H 0.110 0.890 41 H 0.150 0.850 42 H 0.089 0.911 43 H 0.115 0.885 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.565 -11.508 -22.065 25.500 hybrid contribution 0.285 -0.013 0.297 0.412 sum -5.280 -11.521 -21.767 25.188 Atomic orbital electron populations 1.21673 0.93719 1.02292 1.02294 1.20342 0.96919 0.88789 1.04216 1.20573 0.99428 0.94544 0.85570 1.41559 1.51754 1.12145 1.08683 0.74528 1.21792 1.08850 0.87958 0.96682 1.22253 1.02941 0.97408 0.93402 1.19322 1.18018 0.97044 0.88817 1.20129 0.73758 0.81957 0.85315 1.90797 1.44112 1.22209 1.84329 1.86635 1.78794 1.43204 1.15198 1.22667 1.03157 0.96986 0.79569 1.19970 0.79694 0.88865 0.83066 1.90726 1.43676 1.26899 1.76954 1.42789 1.61813 1.19661 1.04917 1.17228 1.12903 0.87143 0.91621 1.20313 1.01556 0.98115 0.93903 1.21191 1.02753 0.92168 1.00063 1.17734 0.88871 0.92889 0.90729 1.19469 1.11649 1.01836 1.16160 0.90612 1.25885 0.96084 0.96594 0.96020 1.69751 1.17744 1.23353 1.33018 0.86241 0.78549 0.81323 0.79771 1.19056 1.20448 1.19098 1.20810 1.09984 0.97146 0.94578 1.20413 1.00043 0.91231 0.98770 0.93152 0.91753 0.91660 0.87826 0.91088 0.80984 0.82638 0.88526 0.88377 0.76877 0.88971 0.84976 0.91074 0.88518 0.87397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.89 37.15 0.37 -0.66 16 2 C -0.06 -0.49 5.80 -27.89 -0.16 -0.65 16 3 C 0.12 1.09 6.47 -81.51 -0.53 0.56 16 4 N -0.55 -3.56 5.89 -8.88 -0.05 -3.61 16 5 H 0.42 1.20 8.96 -40.82 -0.37 0.84 16 6 C -0.03 -0.20 11.87 -16.85 -0.20 -0.40 16 7 C -0.14 -1.50 11.00 -37.49 -0.41 -1.92 16 8 C -0.22 -2.75 6.33 -103.00 -0.65 -3.40 16 9 C 0.54 7.75 7.95 34.33 0.27 8.02 16 10 O -0.52 -7.63 14.63 -19.30 -0.28 -7.91 16 11 O -0.32 -5.11 9.66 -47.41 -0.46 -5.56 16 12 C 0.05 0.75 5.96 36.01 0.21 0.97 16 13 C 0.50 8.98 7.74 -10.98 -0.09 8.90 16 14 O -0.51 -11.41 13.92 -14.09 -0.20 -11.61 16 15 N -0.65 -11.34 5.30 -9.74 -0.05 -11.39 16 16 C 0.00 0.07 6.31 -83.57 -0.53 -0.46 16 17 C -0.12 -2.70 9.90 -39.79 -0.39 -3.10 16 18 C -0.14 -3.65 8.61 -39.26 -0.34 -3.99 16 19 C 0.10 2.70 5.55 -106.80 -0.59 2.11 16 20 C -0.46 -12.32 9.02 -37.85 -0.34 -12.66 16 21 H 0.08 1.94 7.85 -52.49 -0.41 1.53 16 22 C 0.07 1.76 5.42 -17.34 -0.09 1.67 16 23 N -0.81 -21.18 10.60 55.55 0.59 -20.59 16 24 Si 0.92 19.09 29.56 -169.99 -5.03 14.07 16 25 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 26 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 27 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 28 C -0.21 -5.24 9.74 -39.26 -0.38 -5.62 16 29 C -0.08 -2.05 8.61 -39.79 -0.34 -2.39 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 32 H 0.06 0.62 7.98 -51.92 -0.41 0.20 16 33 H 0.10 0.96 6.81 -51.93 -0.35 0.60 16 34 H 0.07 0.34 8.14 -51.92 -0.42 -0.08 16 35 H 0.17 0.75 8.06 -52.49 -0.42 0.33 16 36 H 0.16 1.76 8.06 -52.48 -0.42 1.34 16 37 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.40 5.28 8.82 -40.82 -0.36 4.92 16 40 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 41 H 0.13 3.50 6.13 -52.49 -0.32 3.18 16 42 H 0.28 6.67 8.30 -40.82 -0.34 6.34 16 43 H 0.10 2.34 8.06 -52.49 -0.42 1.92 16 44 H 0.11 2.59 6.22 -52.48 -0.33 2.26 16 LS Contribution 381.06 15.07 5.74 5.74 Total: -1.00 -33.83 381.06 -9.42 -43.25 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -5.49 Total: 10.64 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -4.20 Total: -13.02 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: 0.48 Total: -35.60 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.94 Total: -25.08 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.07 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.83 -9.42 -43.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000803776746.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.040 kcal (2) G-P(sol) polarization free energy of solvation -33.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds