Wall clock time and date at job start Wed Apr 1 2020 01:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 110.76310 * 2 1 4 4 C 1.54641 * 110.73713 * 236.68223 * 2 1 3 5 5 O 1.45945 * 105.10701 * 259.39849 * 4 2 1 6 6 C 1.34561 * 108.40516 * 327.61100 * 5 4 2 7 7 O 1.20826 * 125.94617 * 213.35950 * 6 5 4 8 8 C 1.51511 * 108.11064 * 33.33400 * 6 5 4 9 9 H 1.09003 * 110.39975 * 220.71598 * 8 6 5 10 10 N 1.46497 * 110.40652 * 98.40978 * 8 6 5 11 11 C 1.34771 * 119.99940 * 100.39987 * 10 8 6 12 12 O 1.21666 * 120.00565 * 6.43594 * 11 10 8 13 13 C 1.46896 * 119.99828 * 186.43087 * 11 10 8 14 14 C 1.36125 * 125.43564 * 173.27313 * 13 11 10 15 15 C 1.41698 * 107.74758 * 180.02562 * 14 13 11 16 16 C 1.40019 * 133.35516 * 180.02562 * 15 14 13 17 17 C 1.36575 * 119.83709 * 179.97438 * 16 15 14 18 18 C 1.38855 * 120.59662 * 359.97438 * 17 16 15 19 19 C 1.37847 * 120.63391 * 359.97438 * 18 17 16 20 20 C 1.39084 * 119.81561 * 359.75514 * 19 18 17 21 21 N 1.37834 * 133.16185 * 179.55790 * 20 19 18 22 22 C 1.36890 * 125.62184 * 0.71879 * 21 20 19 23 23 H 1.07998 * 120.00226 * 133.73400 * 22 21 20 24 24 C 1.39012 * 119.99881 * 313.73504 * 22 21 20 25 25 N 1.31355 * 120.00144 * 351.13086 * 24 22 21 26 26 Si 1.86805 * 119.99937 * 171.12599 * 24 22 21 27 27 H 1.48499 * 109.46897 * 275.04036 * 26 24 22 28 28 H 1.48497 * 109.47102 * 35.03851 * 26 24 22 29 29 H 1.48498 * 109.46977 * 155.03905 * 26 24 22 30 30 H 1.09005 * 109.47265 * 289.38437 * 1 2 3 31 31 H 1.09003 * 109.47265 * 49.38386 * 1 2 3 32 32 H 1.08996 * 109.47417 * 169.38347 * 1 2 3 33 33 H 1.09000 * 109.47076 * 183.18755 * 3 2 1 34 34 H 1.08998 * 109.46928 * 303.18894 * 3 2 1 35 35 H 1.09002 * 109.46701 * 63.18632 * 3 2 1 36 36 H 1.09003 * 110.26437 * 140.51303 * 4 2 1 37 37 H 1.09001 * 110.43092 * 18.37357 * 4 2 1 38 38 H 0.97000 * 119.99438 * 280.40521 * 10 8 6 39 39 H 1.08000 * 126.12707 * 0.05620 * 14 13 11 40 40 H 1.08000 * 120.08047 * 359.97022 * 16 15 14 41 41 H 1.07993 * 119.70152 * 179.97438 * 17 16 15 42 42 H 1.08005 * 119.68427 * 179.97438 * 18 17 16 43 43 H 1.07998 * 120.09057 * 179.97438 * 19 18 17 44 44 H 0.96992 * 119.99638 * 175.03913 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0724 1.4307 0.0000 4 6 2.0775 -0.7944 -1.2085 5 8 2.4546 -2.0967 -0.6683 6 6 2.8729 -1.9259 0.5992 7 8 3.7345 -2.5660 1.1541 8 6 2.0759 -0.7910 1.2093 9 1 2.7215 -0.1575 1.8177 10 7 0.9721 -1.3177 2.0157 11 6 1.0876 -1.3803 3.3570 12 8 2.0571 -0.8934 3.9076 13 6 0.0427 -2.0365 4.1542 14 6 0.1055 -2.2773 5.4925 15 6 -1.0967 -2.9242 5.8719 16 6 -1.5867 -3.4030 7.0930 17 6 -2.8157 -3.9963 7.1464 18 6 -3.5867 -4.1294 5.9992 19 6 -3.1263 -3.6650 4.7857 20 6 -1.8802 -3.0522 4.7074 21 7 -1.1614 -2.5071 3.6653 22 6 -1.5739 -2.4389 2.3619 23 1 -1.4640 -1.5182 1.8081 24 6 -2.1345 -3.5547 1.7510 25 7 -2.1107 -4.7183 2.3599 26 14 -2.9219 -3.3991 0.0641 27 1 -4.3293 -2.9499 0.2143 28 1 -2.1690 -2.4065 -0.7439 29 1 -2.8932 -4.7174 -0.6189 30 1 -0.3634 0.3411 0.9694 31 1 -0.3634 0.6690 -0.7801 32 1 -0.3634 -1.0100 -0.1893 33 1 3.1606 1.4066 -0.0571 34 1 1.6751 1.9698 -0.8600 35 1 1.7677 1.9347 0.9172 36 1 2.9493 -0.2915 -1.6272 37 1 1.3057 -0.9093 -1.9696 38 1 0.1582 -1.6213 1.5841 39 1 0.9247 -2.0207 6.1479 40 1 -0.9942 -3.3035 7.9905 41 1 -3.1913 -4.3652 8.0893 42 1 -4.5563 -4.6014 6.0582 43 1 -3.7331 -3.7736 3.8989 44 1 -2.5642 -5.4805 1.9672 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837634594.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:22:31 Heat of formation + Delta-G solvation = -50.084869 kcal Electronic energy + Delta-G solvation = -31018.860624 eV Core-core repulsion = 26902.057774 eV Total energy + Delta-G solvation = -4116.802849 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.141 amu Computer time = 2.60 seconds Orbital eigenvalues (eV) -41.43308 -40.45963 -38.47323 -37.63792 -35.99588 -35.72148 -33.78160 -33.08047 -30.81092 -29.27612 -28.49302 -27.85207 -27.03071 -26.75235 -25.09849 -23.15668 -21.20080 -21.01537 -20.11237 -20.03494 -19.41300 -18.36766 -17.03678 -16.92636 -16.51509 -16.41106 -15.75483 -15.03265 -14.92453 -14.81636 -14.53796 -14.19726 -14.09929 -13.83095 -13.65677 -13.18727 -13.09022 -13.00976 -12.77417 -12.63683 -12.35063 -12.26530 -12.01889 -11.80738 -11.49418 -11.46948 -11.45746 -11.29208 -11.14800 -10.80153 -10.69047 -10.59503 -10.46696 -10.26718 -9.84938 -9.58303 -9.35498 -8.72154 -8.64132 -7.27506 -6.94415 -6.62011 -4.82115 1.73123 1.94664 2.68679 2.84268 2.86116 2.91347 3.00030 3.23096 3.60158 3.70786 3.90488 4.02729 4.24695 4.42613 4.45972 4.51734 4.61415 4.97205 5.01069 5.15597 5.20909 5.33140 5.46450 5.58953 5.67139 5.68206 5.77428 5.82599 5.90288 5.95412 6.09378 6.15322 6.37424 6.49870 6.61793 6.65947 6.71107 6.73862 6.83168 7.03606 7.05966 7.38767 7.49876 7.51474 7.57452 7.83601 7.84561 8.01513 8.23638 8.55515 8.78540 9.18697 10.05805 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.012267 B = 0.004834 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.954197 B = 5790.353282 C = 7105.313740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.107 4.107 3 C -0.136 4.136 4 C 0.060 3.940 5 O -0.349 6.349 6 C 0.474 3.526 7 O -0.433 6.433 8 C 0.089 3.911 9 H 0.133 0.867 10 N -0.710 5.710 11 C 0.600 3.400 12 O -0.546 6.546 13 C -0.018 4.018 14 C -0.158 4.158 15 C -0.134 4.134 16 C -0.083 4.083 17 C -0.161 4.161 18 C -0.142 4.142 19 C -0.059 4.059 20 C 0.111 3.889 21 N -0.261 5.261 22 C -0.383 4.383 23 H 0.106 0.894 24 C 0.061 3.939 25 N -0.811 5.811 26 Si 0.920 3.080 27 H -0.265 1.265 28 H -0.259 1.259 29 H -0.274 1.274 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.113 0.887 38 H 0.424 0.576 39 H 0.134 0.866 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.113 0.887 44 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.041 8.467 -7.090 11.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.109 4.109 3 C -0.193 4.193 4 C -0.014 4.014 5 O -0.267 6.267 6 C 0.310 3.690 7 O -0.311 6.311 8 C -0.019 4.019 9 H 0.151 0.849 10 N -0.374 5.374 11 C 0.390 3.610 12 O -0.423 6.423 13 C -0.133 4.133 14 C -0.186 4.186 15 C -0.138 4.138 16 C -0.102 4.102 17 C -0.180 4.180 18 C -0.163 4.163 19 C -0.079 4.079 20 C -0.004 4.004 21 N 0.075 4.925 22 C -0.510 4.510 23 H 0.123 0.877 24 C -0.154 4.154 25 N -0.438 5.438 26 Si 0.743 3.257 27 H -0.190 1.190 28 H -0.183 1.183 29 H -0.198 1.198 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.131 0.869 38 H 0.273 0.727 39 H 0.152 0.848 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.131 0.869 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.998 8.049 -7.034 10.736 hybrid contribution -0.810 -0.400 -1.029 1.369 sum 0.188 7.649 -8.063 11.116 Atomic orbital electron populations 1.21992 0.91713 1.03300 1.03647 1.22148 0.98452 0.96633 0.93622 1.21831 1.00965 0.93139 1.03368 1.24308 1.01133 0.80008 0.95981 1.87306 1.77743 1.31984 1.29623 1.23814 0.80019 0.83722 0.81423 1.90701 1.26845 1.48518 1.65050 1.22214 0.91418 0.94393 0.93883 0.84939 1.46666 1.18750 1.65600 1.06433 1.17383 0.84941 0.77418 0.81213 1.90730 1.32530 1.47364 1.71719 1.20000 0.88609 1.10579 0.94076 1.20417 0.98566 1.06669 0.92955 1.18029 0.96046 1.06219 0.93529 1.20079 0.95613 0.99196 0.95319 1.20279 0.95751 1.04428 0.97529 1.20592 0.99613 1.03488 0.92584 1.20023 0.93865 0.97291 0.96730 1.18273 0.93966 1.02032 0.86168 1.39865 1.08536 1.38696 1.05422 1.19464 1.46707 0.98523 0.86332 0.87681 1.25699 0.95666 0.93886 1.00170 1.69921 1.34130 1.00067 1.39692 0.86053 0.80169 0.79000 0.80432 1.18993 1.18295 1.19836 0.90616 0.91243 0.91209 0.91909 0.91296 0.91082 0.89470 0.86879 0.72717 0.84842 0.87640 0.87813 0.87597 0.86928 0.90429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 6.91 37.16 0.26 -1.47 16 2 C -0.11 -1.21 1.10 -152.88 -0.17 -1.37 16 3 C -0.14 -1.13 8.31 37.16 0.31 -0.82 16 4 C 0.06 0.62 7.03 38.02 0.27 0.89 16 5 O -0.35 -5.49 11.17 -39.73 -0.44 -5.94 16 6 C 0.47 8.60 8.14 36.40 0.30 8.90 16 7 O -0.43 -9.42 18.00 -18.32 -0.33 -9.75 16 8 C 0.09 1.43 3.23 -67.92 -0.22 1.21 16 9 H 0.13 2.14 6.79 -51.93 -0.35 1.79 16 10 N -0.71 -13.68 4.09 -55.03 -0.22 -13.90 16 11 C 0.60 13.52 7.76 -12.76 -0.10 13.42 16 12 O -0.55 -12.96 16.33 5.22 0.09 -12.87 16 13 C -0.02 -0.44 6.77 -82.24 -0.56 -1.00 16 14 C -0.16 -3.69 10.55 -39.02 -0.41 -4.10 16 15 C -0.13 -3.11 6.16 -106.89 -0.66 -3.76 16 16 C -0.08 -1.68 10.06 -39.51 -0.40 -2.08 16 17 C -0.16 -3.03 9.97 -39.95 -0.40 -3.43 16 18 C -0.14 -2.81 10.02 -39.50 -0.40 -3.20 16 19 C -0.06 -1.34 8.65 -39.41 -0.34 -1.68 16 20 C 0.11 2.70 6.04 -83.83 -0.51 2.19 16 21 N -0.26 -6.36 2.78 -56.08 -0.16 -6.52 16 22 C -0.38 -8.76 7.67 -15.01 -0.12 -8.87 16 23 H 0.11 2.17 5.66 -52.49 -0.30 1.87 16 24 C 0.06 1.38 4.75 -17.47 -0.08 1.29 16 25 N -0.81 -19.81 11.09 55.50 0.62 -19.19 16 26 Si 0.92 16.75 29.57 -169.99 -5.03 11.73 16 27 H -0.27 -4.77 7.11 56.52 0.40 -4.37 16 28 H -0.26 -4.28 6.91 56.52 0.39 -3.89 16 29 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 30 H 0.07 0.97 7.21 -51.93 -0.37 0.60 16 31 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 32 H 0.07 0.92 7.00 -51.93 -0.36 0.56 16 33 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 0.66 7.78 -51.93 -0.40 0.26 16 37 H 0.11 0.92 7.83 -51.93 -0.41 0.52 16 38 H 0.42 8.15 2.53 -40.82 -0.10 8.05 16 39 H 0.13 2.88 8.06 -52.49 -0.42 2.46 16 40 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 41 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 42 H 0.11 1.78 8.06 -52.48 -0.42 1.36 16 43 H 0.11 2.57 6.87 -52.49 -0.36 2.21 16 44 H 0.28 6.50 8.31 -40.82 -0.34 6.16 16 LS Contribution 361.95 15.07 5.45 5.45 Total: -1.00 -30.54 361.95 -8.43 -38.97 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: -5.19 Total: 15.92 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -3.22 Total: -3.89 kcal Atomic # 7 Polarization: -39.85 SS G_CDS: 0.23 Total: -39.62 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -0.69 Total: -28.56 kcal Atomic # 14 Polarization: 16.75 SS G_CDS: -5.03 Total: 11.73 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.54 -8.43 -38.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837634594.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.115 kcal (2) G-P(sol) polarization free energy of solvation -30.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.60 seconds