Wall clock time and date at job start Wed Apr 1 2020 00:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 114.00354 * 2 1 4 4 C 1.52997 * 109.47100 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47241 * 65.01829 * 4 3 2 6 6 C 1.46498 * 119.99953 * 273.56638 * 5 4 3 7 7 S 1.65596 * 120.00028 * 93.56564 * 5 4 3 8 8 O 1.42095 * 106.40382 * 338.72736 * 7 5 4 9 9 O 1.42100 * 106.40324 * 205.80537 * 7 5 4 10 10 N 1.65601 * 107.21754 * 92.26507 * 7 5 4 11 11 C 1.46499 * 120.00174 * 273.39878 * 10 7 5 12 12 C 1.50698 * 109.47533 * 265.00001 * 11 10 7 13 13 H 1.08003 * 119.99734 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00076 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99793 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 119.99819 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47724 * 59.99921 * 16 14 12 18 18 H 1.48500 * 109.47112 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47312 * 299.99665 * 16 14 12 20 20 C 1.39675 * 119.99908 * 93.40415 * 10 7 5 21 21 C 1.38926 * 120.07622 * 333.86422 * 20 10 7 22 22 C 1.38085 * 119.92897 * 179.97438 * 21 20 10 23 23 C 1.38303 * 120.07154 * 0.27901 * 22 21 20 24 24 C 1.38264 * 120.15215 * 359.44342 * 23 22 21 25 25 C 1.50698 * 119.96568 * 180.27826 * 24 23 22 26 26 C 1.38125 * 120.07106 * 0.55683 * 24 23 22 27 27 H 1.08994 * 109.47363 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46890 * 299.99868 * 1 2 3 29 29 H 1.08998 * 109.46622 * 60.00015 * 1 2 3 30 30 H 1.09003 * 109.47061 * 59.99686 * 3 2 1 31 31 H 1.08996 * 109.47363 * 300.00010 * 3 2 1 32 32 H 1.08998 * 109.47258 * 305.01561 * 4 3 2 33 33 H 1.09005 * 109.47066 * 185.02073 * 4 3 2 34 34 H 1.09000 * 109.47365 * 270.00015 * 6 5 4 35 35 H 1.09000 * 109.47430 * 29.99975 * 6 5 4 36 36 H 1.09008 * 109.47131 * 149.99809 * 6 5 4 37 37 H 1.09000 * 109.46843 * 25.00305 * 11 10 7 38 38 H 1.09000 * 109.47041 * 144.99722 * 11 10 7 39 39 H 0.97006 * 119.99834 * 180.02562 * 15 14 12 40 40 H 1.08003 * 120.03818 * 359.97438 * 21 20 10 41 41 H 1.07999 * 119.96185 * 179.97438 * 22 21 20 42 42 H 1.07998 * 119.92465 * 179.70392 * 23 22 21 43 43 H 1.09000 * 109.47511 * 270.27430 * 25 24 23 44 44 H 1.08999 * 109.47032 * 30.27783 * 25 24 23 45 45 H 1.09005 * 109.46843 * 150.27327 * 25 24 23 46 46 H 1.08004 * 120.04180 * 179.74602 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9768 0.5642 -1.2511 6 6 4.0314 -0.8953 -1.3658 7 16 4.4137 1.5127 -2.5362 8 8 3.8042 2.7789 -2.3259 9 8 4.1990 0.7310 -3.7032 10 7 6.0482 1.7574 -2.4315 11 6 6.5734 2.8616 -1.6247 12 6 6.8139 4.0589 -2.5077 13 1 6.5969 4.0030 -3.5642 14 6 7.3101 5.2260 -1.9666 15 7 7.5740 5.2942 -0.6800 16 14 7.6076 6.7103 -3.0610 17 1 6.3290 7.1233 -3.6935 18 1 8.1389 7.8299 -2.2430 19 1 8.5908 6.3579 -4.1166 20 6 6.9261 0.9109 -3.1125 21 6 6.5459 -0.3913 -3.4120 22 6 7.4160 -1.2253 -4.0859 23 6 8.6670 -0.7674 -4.4574 24 6 9.0465 0.5298 -4.1660 25 6 10.4083 1.0264 -4.5784 26 6 8.1810 1.3693 -3.4922 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 1.6887 1.8464 0.8900 31 1 1.6888 1.8463 -0.8899 32 1 3.8508 0.5681 0.8425 33 1 3.9786 2.1764 0.0906 34 1 5.0156 -1.2475 -1.0570 35 1 3.2693 -1.3390 -0.7252 36 1 3.8499 -1.1854 -2.4008 37 1 5.8518 3.1207 -0.8498 38 1 7.5118 2.5582 -1.1604 39 1 7.9227 6.1154 -0.2993 40 1 5.5708 -0.7510 -3.1182 41 1 7.1211 -2.2379 -4.3186 42 1 9.3474 -1.4232 -4.9802 43 1 11.1246 0.8267 -3.7814 44 1 10.7227 0.5124 -5.4867 45 1 10.3625 2.0993 -4.7654 46 1 8.4795 2.3813 -3.2612 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844655198.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:33 Heat of formation + Delta-G solvation = -87.381672 kcal Electronic energy + Delta-G solvation = -29595.221656 eV Core-core repulsion = 25612.245447 eV Total energy + Delta-G solvation = -3982.976209 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.16216 -38.18743 -36.85861 -35.78624 -35.65064 -35.30085 -32.81894 -31.89896 -30.09773 -29.25256 -27.31479 -26.78027 -26.15463 -25.27447 -23.06788 -22.49918 -21.40392 -21.20985 -18.45880 -17.76328 -16.95695 -16.74032 -16.43496 -16.13722 -15.91890 -15.52855 -15.24904 -14.90875 -14.53382 -14.07583 -14.05910 -13.66622 -13.45558 -13.24281 -13.00810 -12.72461 -12.66555 -12.39333 -12.14577 -12.06508 -12.00612 -11.87927 -11.83525 -11.56485 -11.46759 -11.29204 -11.08427 -11.07273 -10.99560 -10.84738 -10.67753 -10.38826 -10.35399 -9.91945 -9.71124 -9.18296 -8.89715 -8.53792 -8.20823 -7.39432 -6.16728 -4.21627 0.97527 1.86317 1.97739 3.27256 3.29304 3.32546 3.37875 3.74255 3.86715 4.31541 4.37046 4.73610 4.90865 5.05970 5.16842 5.21009 5.25177 5.26675 5.29564 5.38428 5.40070 5.43268 5.52700 5.60492 5.66851 5.69382 5.80234 5.86317 5.92473 5.93787 6.03981 6.16748 6.18367 6.23854 6.41508 6.61115 6.70346 6.88224 6.99815 7.03722 7.09879 7.14818 7.30728 7.35524 7.75141 7.81569 8.03493 8.80446 9.43816 10.91366 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.009389 B = 0.005325 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2981.444656 B = 5257.049640 C = 7580.364456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.387 6.387 3 C 0.040 3.960 4 C 0.128 3.872 5 N -1.006 6.006 6 C 0.085 3.915 7 S 2.775 3.225 8 O -0.953 6.953 9 O -0.980 6.980 10 N -0.935 5.935 11 C 0.250 3.750 12 C -0.532 4.532 13 H 0.062 0.938 14 C 0.067 3.933 15 N -0.892 5.892 16 Si 0.897 3.103 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.274 1.274 20 C 0.194 3.806 21 C -0.180 4.180 22 C -0.092 4.092 23 C -0.159 4.159 24 C -0.069 4.069 25 C -0.111 4.111 26 C -0.134 4.134 27 H 0.083 0.917 28 H 0.039 0.961 29 H 0.040 0.960 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.087 0.913 33 H 0.103 0.897 34 H 0.052 0.948 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.042 0.958 38 H 0.044 0.956 39 H 0.266 0.734 40 H 0.125 0.875 41 H 0.118 0.882 42 H 0.113 0.887 43 H 0.067 0.933 44 H 0.060 0.940 45 H 0.067 0.933 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.827 -12.710 1.194 13.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.306 6.306 3 C -0.038 4.038 4 C 0.002 3.998 5 N -0.845 5.845 6 C -0.060 4.060 7 S 2.785 3.215 8 O -0.937 6.937 9 O -0.964 6.964 10 N -0.761 5.761 11 C 0.129 3.871 12 C -0.571 4.571 13 H 0.081 0.919 14 C -0.136 4.136 15 N -0.530 5.530 16 Si 0.724 3.276 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.200 1.200 20 C 0.096 3.904 21 C -0.202 4.202 22 C -0.111 4.111 23 C -0.179 4.179 24 C -0.070 4.070 25 C -0.168 4.168 26 C -0.156 4.156 27 H 0.101 0.899 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.105 0.895 33 H 0.121 0.879 34 H 0.070 0.930 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.143 0.857 41 H 0.136 0.864 42 H 0.132 0.868 43 H 0.086 0.914 44 H 0.079 0.921 45 H 0.086 0.914 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -5.314 -12.329 0.764 13.448 hybrid contribution 0.076 1.053 -0.150 1.067 sum -5.238 -11.276 0.614 12.448 Atomic orbital electron populations 1.22726 0.81542 1.02432 0.99943 1.87860 1.19281 1.28044 1.95446 1.23145 0.94649 0.84756 1.01263 1.21350 0.91967 0.99693 0.86827 1.57901 1.80675 1.16578 1.29330 1.21645 1.02057 0.79087 1.03245 1.02392 0.72983 0.73059 0.73097 1.93637 1.74414 1.40096 1.85539 1.93571 1.85169 1.71460 1.46173 1.56093 1.23909 1.38332 1.57784 1.19293 0.96026 0.81967 0.89771 1.21347 1.44008 0.96416 0.95336 0.91947 1.24892 0.95005 0.98564 0.95128 1.69899 1.44038 1.28025 1.11079 0.86570 0.78855 0.81793 0.80411 1.19923 1.21082 1.19956 1.17546 0.91406 0.88390 0.93009 1.21202 1.01159 0.92494 1.05304 1.20696 0.93544 0.98863 0.97986 1.20808 0.96931 0.95721 1.04393 1.19756 0.96012 0.93710 0.97563 1.20756 0.93489 1.01728 1.00792 1.21274 0.93103 1.01509 0.99667 0.89853 0.94215 0.94171 0.92044 0.92435 0.89468 0.87913 0.92972 0.89716 0.90539 0.94041 0.93835 0.92443 0.85688 0.86385 0.86848 0.91447 0.92076 0.91353 0.83265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.39 -4.92 9.20 -35.23 -0.32 -5.24 16 3 C 0.04 0.53 6.28 37.16 0.23 0.76 16 4 C 0.13 1.82 5.75 -4.04 -0.02 1.79 16 5 N -1.01 -16.11 3.22 -121.76 -0.39 -16.50 16 6 C 0.09 1.13 9.05 59.85 0.54 1.67 16 7 S 2.77 56.86 5.56 -107.50 -0.60 56.26 16 8 O -0.95 -22.29 16.15 -57.17 -0.92 -23.21 16 9 O -0.98 -20.98 13.87 -57.17 -0.79 -21.77 16 10 N -0.93 -20.23 3.04 -59.81 -0.18 -20.41 16 11 C 0.25 6.10 4.47 -5.20 -0.02 6.07 16 12 C -0.53 -14.37 7.85 -34.44 -0.27 -14.64 16 13 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 14 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 15 N -0.89 -24.85 13.29 55.43 0.74 -24.11 16 16 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 17 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 20 C 0.19 3.97 6.09 -83.79 -0.51 3.46 16 21 C -0.18 -3.24 8.44 -39.38 -0.33 -3.57 16 22 C -0.09 -1.43 10.04 -39.61 -0.40 -1.83 16 23 C -0.16 -2.41 9.70 -39.55 -0.38 -2.79 16 24 C -0.07 -1.16 5.88 -104.65 -0.62 -1.78 16 25 C -0.11 -1.51 10.01 36.00 0.36 -1.15 16 26 C -0.13 -2.67 8.71 -39.38 -0.34 -3.01 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.09 1.04 8.10 -51.93 -0.42 0.62 16 33 H 0.10 1.57 7.22 -51.93 -0.37 1.20 16 34 H 0.05 0.63 7.99 -51.93 -0.41 0.21 16 35 H 0.08 1.00 6.80 -51.93 -0.35 0.65 16 36 H 0.08 1.04 6.20 -51.92 -0.32 0.72 16 37 H 0.04 1.04 7.32 -51.93 -0.38 0.66 16 38 H 0.04 1.09 7.79 -51.93 -0.40 0.68 16 39 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.13 2.12 3.24 -52.48 -0.17 1.95 16 41 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 42 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 43 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 45 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 46 H 0.15 3.27 6.17 -52.48 -0.32 2.95 16 LS Contribution 382.01 15.07 5.76 5.76 Total: -1.00 -32.14 382.01 -9.42 -41.56 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -6.93 Total: 3.35 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: -0.75 Total: -11.88 kcal Atomic # 7 Polarization: -61.18 SS G_CDS: 0.16 Total: -61.02 kcal Atomic # 8 Polarization: -48.19 SS G_CDS: -2.04 Total: -50.23 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 56.86 SS G_CDS: -0.60 Total: 56.26 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.14 -9.42 -41.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844655198.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.826 kcal (2) G-P(sol) polarization free energy of solvation -32.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds