Wall clock time and date at job start Wed Apr 1 2020 00:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 110.28731 * 2 1 4 4 O 1.21280 * 119.99834 * 110.31541 * 3 2 1 5 5 N 1.34774 * 120.00122 * 290.31949 * 3 2 1 6 6 C 1.47163 * 120.70986 * 3.94366 * 5 3 2 7 7 C 1.54483 * 108.00672 * 132.63925 * 6 5 3 8 8 H 1.09006 * 112.35220 * 181.98729 * 7 6 5 9 9 C 1.54549 * 107.85365 * 306.76867 * 7 6 5 10 10 C 1.53733 * 104.95136 * 88.85903 * 9 7 6 11 11 C 1.54545 * 104.95760 * 359.97438 * 10 9 7 12 12 H 1.08999 * 112.68287 * 146.56368 * 11 10 9 13 13 C 1.47158 * 120.71196 * 183.92835 * 5 3 2 14 14 N 1.48303 * 106.89751 * 58.49323 * 7 6 5 15 15 C 1.36938 * 128.07877 * 106.80452 * 14 7 6 16 16 H 1.08007 * 119.99767 * 169.20730 * 15 14 7 17 17 C 1.38804 * 119.99946 * 349.20863 * 15 14 7 18 18 N 1.31617 * 120.00118 * 345.99048 * 17 15 14 19 19 Si 1.86807 * 120.00069 * 165.99575 * 17 15 14 20 20 H 1.48501 * 109.47050 * 180.02562 * 19 17 15 21 21 H 1.48499 * 109.46619 * 299.99902 * 19 17 15 22 22 H 1.48497 * 109.47151 * 59.99672 * 19 17 15 23 23 C 1.54166 * 110.39837 * 237.82791 * 2 1 3 24 24 C 1.53876 * 108.70244 * 213.14242 * 23 2 1 25 25 C 1.55049 * 106.62102 * 47.18757 * 24 23 2 26 26 S 1.82916 * 110.31994 * 122.11849 * 2 1 3 27 27 O 1.42102 * 109.35425 * 234.52101 * 26 2 1 28 28 O 1.42102 * 109.35295 * 7.59387 * 26 2 1 29 29 H 1.08997 * 109.47263 * 52.76439 * 1 2 3 30 30 H 1.08996 * 109.47519 * 172.76718 * 1 2 3 31 31 H 1.09004 * 109.46842 * 292.76867 * 1 2 3 32 32 H 1.09002 * 109.75168 * 252.37500 * 6 5 3 33 33 H 1.09002 * 109.75159 * 13.05441 * 6 5 3 34 34 H 1.08999 * 110.36138 * 207.57339 * 9 7 6 35 35 H 1.08998 * 110.36194 * 329.89149 * 9 7 6 36 36 H 1.08997 * 110.41482 * 241.06121 * 10 9 7 37 37 H 1.09007 * 110.20453 * 118.82143 * 10 9 7 38 38 H 1.08998 * 109.75504 * 107.62361 * 13 5 3 39 39 H 1.09005 * 109.74649 * 346.89061 * 13 5 3 40 40 H 0.96998 * 120.00200 * 179.97438 * 18 17 15 41 41 H 1.08996 * 109.65032 * 333.00091 * 23 2 1 42 42 H 1.09001 * 109.64786 * 93.29609 * 23 2 1 43 43 H 1.08993 * 110.03440 * 287.89301 * 24 23 2 44 44 H 1.09009 * 110.02628 * 166.47570 * 24 23 2 45 45 H 1.09007 * 110.78698 * 199.29583 * 25 24 23 46 46 H 1.08998 * 110.79071 * 75.83568 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0525 1.4135 0.0000 4 8 2.6048 1.8558 0.9850 5 7 1.9060 2.1861 -1.0945 6 6 1.1632 1.6959 -2.2665 7 6 0.1807 2.8038 -2.7069 8 1 -0.4339 2.5000 -3.5543 9 6 -0.6606 3.2080 -1.4751 10 6 0.1461 4.3248 -0.7929 11 6 1.4062 4.4996 -1.6703 12 1 1.7566 5.5313 -1.7019 13 6 2.4851 3.5381 -1.1431 14 7 0.9942 4.0068 -3.0074 15 6 1.2911 4.5411 -4.2328 16 1 1.7484 5.5172 -4.2999 17 6 1.0041 3.8282 -5.3887 18 7 0.7092 2.5475 -5.3159 19 14 1.0366 4.6863 -7.0477 20 1 0.6963 3.7121 -8.1156 21 1 0.0451 5.7918 -7.0526 22 1 2.3935 5.2372 -7.2935 23 6 2.0673 -0.7694 -1.2231 24 6 3.3832 -1.4637 -0.8302 25 6 3.1247 -2.1690 0.5261 26 16 2.1652 -0.9120 1.4528 27 8 3.0585 -0.0784 2.1784 28 8 1.0825 -1.5422 2.1235 29 1 -0.3633 0.6218 -0.8181 30 1 -0.3634 -1.0194 -0.1294 31 1 -0.3633 0.3977 0.9476 32 1 1.8579 1.4741 -3.0766 33 1 0.6080 0.7963 -2.0009 34 1 -1.6346 3.5843 -1.7879 35 1 -0.7794 2.3591 -0.8018 36 1 0.4262 4.0284 0.2179 37 1 -0.4328 5.2482 -0.7716 38 1 3.3452 3.5466 -1.8127 39 1 2.7932 3.8430 -0.1430 40 1 0.5083 2.0494 -6.1236 41 1 1.3378 -1.5165 -1.5356 42 1 2.2504 -0.0739 -2.0422 43 1 4.1771 -0.7249 -0.7215 44 1 3.6578 -2.1987 -1.5869 45 1 4.0643 -2.3894 1.0328 46 1 2.5380 -3.0767 0.3846 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029512246.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:49:38 Heat of formation + Delta-G solvation = -43.331355 kcal Electronic energy + Delta-G solvation = -31054.212627 eV Core-core repulsion = 27073.146583 eV Total energy + Delta-G solvation = -3981.066044 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -40.60332 -38.18633 -37.01073 -36.49885 -35.80108 -33.82294 -32.72807 -32.26222 -30.42023 -29.36708 -27.09271 -26.48064 -24.56655 -23.99223 -23.37100 -21.91809 -20.42865 -19.73690 -18.91604 -18.46492 -17.22049 -16.69195 -16.32491 -15.91850 -15.69167 -15.26028 -15.02438 -14.55244 -14.45729 -14.25867 -13.84719 -13.61792 -13.51286 -13.39187 -13.12609 -12.79181 -12.61094 -12.24242 -12.08120 -11.97391 -11.86806 -11.78781 -11.70707 -11.53045 -11.49731 -11.18354 -11.02011 -10.93746 -10.82875 -10.60157 -10.43770 -10.22291 -10.10499 -9.92841 -9.65202 -9.61385 -9.32696 -8.83442 -8.15169 -6.97549 -5.95505 -3.25761 0.00444 2.52701 2.84608 3.27398 3.30271 3.36004 3.37523 3.61955 4.05039 4.21744 4.34340 4.46414 4.51116 4.56183 4.80080 4.88063 5.08925 5.22841 5.28241 5.32443 5.48829 5.51409 5.59876 5.62703 5.65135 5.70907 5.76387 5.78558 5.82776 5.89902 6.02448 6.05383 6.27249 6.32810 6.47905 6.52679 6.55386 6.65032 6.80215 6.83998 7.12256 7.35991 7.55802 7.90414 8.02492 8.48063 8.95900 9.58699 10.33764 11.18103 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.019633 B = 0.004087 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.853508 B = 6849.532595 C = 7359.350013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.551 4.551 3 C 0.531 3.469 4 O -0.524 6.524 5 N -0.579 5.579 6 C 0.086 3.914 7 C 0.164 3.836 8 H 0.124 0.876 9 C -0.141 4.141 10 C -0.125 4.125 11 C 0.134 3.866 12 H 0.079 0.921 13 C 0.101 3.899 14 N -0.584 5.584 15 C -0.223 4.223 16 H 0.078 0.922 17 C -0.003 4.003 18 N -0.916 5.916 19 Si 0.910 3.090 20 H -0.290 1.290 21 H -0.286 1.286 22 H -0.285 1.285 23 C -0.124 4.124 24 C -0.118 4.118 25 C -0.595 4.595 26 S 2.406 3.594 27 O -0.893 6.893 28 O -0.937 6.937 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.255 0.745 41 H 0.094 0.906 42 H 0.115 0.885 43 H 0.086 0.914 44 H 0.099 0.901 45 H 0.135 0.865 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.825 -9.190 7.092 11.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.642 4.642 3 C 0.315 3.685 4 O -0.401 6.401 5 N -0.311 5.311 6 C -0.037 4.037 7 C 0.056 3.944 8 H 0.142 0.858 9 C -0.180 4.180 10 C -0.164 4.164 11 C 0.026 3.974 12 H 0.097 0.903 13 C -0.023 4.023 14 N -0.305 5.305 15 C -0.351 4.351 16 H 0.095 0.905 17 C -0.200 4.200 18 N -0.563 5.563 19 Si 0.741 3.259 20 H -0.216 1.216 21 H -0.212 1.212 22 H -0.212 1.212 23 C -0.162 4.162 24 C -0.156 4.156 25 C -0.724 4.724 26 S 2.585 3.415 27 O -0.890 6.890 28 O -0.934 6.934 29 H 0.116 0.884 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.065 0.935 41 H 0.113 0.887 42 H 0.133 0.867 43 H 0.104 0.896 44 H 0.118 0.882 45 H 0.154 0.846 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.984 -8.816 8.258 12.120 hybrid contribution 0.164 0.131 -1.898 1.909 sum 1.148 -8.685 6.360 10.826 Atomic orbital electron populations 1.21897 0.87446 1.04824 1.05019 1.30340 1.07835 1.06074 1.19941 1.19106 0.80368 0.85018 0.83996 1.90902 1.43755 1.73207 1.32281 1.48032 1.52592 1.15347 1.15087 1.23154 0.96112 0.98219 0.86190 1.22131 0.90915 0.86708 0.94636 0.85811 1.22651 0.98981 0.97788 0.98600 1.22385 0.97388 0.98464 0.98150 1.21973 0.92530 0.95963 0.86944 0.90272 1.22429 0.96952 0.81805 1.01159 1.45203 1.56676 1.28914 0.99717 1.18991 1.35658 0.99217 0.81238 0.90469 1.24705 1.02274 0.95419 0.97602 1.69802 1.52984 1.05917 1.27610 0.86223 0.77895 0.78497 0.83312 1.21617 1.21225 1.21150 1.22531 0.96812 0.99978 0.96884 1.22196 0.98536 0.99987 0.94897 1.30716 1.15078 1.15593 1.11057 1.09053 0.77079 0.77830 0.77534 1.93696 1.63806 1.64448 1.67057 1.93576 1.54025 1.75507 1.70277 0.88417 0.89940 0.90966 0.89838 0.90478 0.92643 0.92689 0.92499 0.92653 0.91726 0.90324 0.93489 0.88708 0.86725 0.89578 0.88243 0.84626 0.84618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.61 7.35 37.16 0.27 -1.34 16 2 C -0.55 -7.32 0.74 -91.16 -0.07 -7.39 16 3 C 0.53 9.08 6.54 -10.99 -0.07 9.01 16 4 O -0.52 -10.68 13.55 -18.39 -0.25 -10.93 16 5 N -0.58 -10.11 2.20 -171.20 -0.38 -10.49 16 6 C 0.09 1.52 3.64 -2.90 -0.01 1.51 16 7 C 0.16 3.29 3.21 -65.35 -0.21 3.08 16 8 H 0.12 2.83 6.21 -51.93 -0.32 2.51 16 9 C -0.14 -2.47 6.16 -25.54 -0.16 -2.63 16 10 C -0.12 -2.17 6.16 -25.54 -0.16 -2.33 16 11 C 0.13 2.56 4.32 -65.67 -0.28 2.28 16 12 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 13 C 0.10 1.86 5.91 -3.25 -0.02 1.84 16 14 N -0.58 -12.98 2.81 -152.26 -0.43 -13.40 16 15 C -0.22 -5.54 10.36 -15.06 -0.16 -5.70 16 16 H 0.08 1.89 7.87 -52.48 -0.41 1.48 16 17 C 0.00 -0.09 5.39 -17.43 -0.09 -0.18 16 18 N -0.92 -23.14 10.70 55.49 0.59 -22.54 16 19 Si 0.91 20.29 29.58 -169.99 -5.03 15.26 16 20 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 22 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 23 C -0.12 -1.32 4.42 -25.67 -0.11 -1.43 16 24 C -0.12 -1.08 6.48 -25.19 -0.16 -1.25 16 25 C -0.60 -5.21 7.31 38.24 0.28 -4.93 16 26 S 2.41 32.19 5.75 -107.50 -0.62 31.57 16 27 O -0.89 -15.87 15.35 -67.12 -1.03 -16.90 16 28 O -0.94 -14.08 17.29 -57.73 -1.00 -15.08 16 29 H 0.10 1.21 3.43 -51.93 -0.18 1.03 16 30 H 0.08 0.78 7.95 -51.93 -0.41 0.36 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.08 1.69 7.52 -51.93 -0.39 1.30 16 33 H 0.08 1.14 3.30 -51.93 -0.17 0.97 16 34 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.05 0.86 5.57 -51.93 -0.29 0.57 16 36 H 0.06 0.98 7.84 -51.93 -0.41 0.57 16 37 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.08 1.43 7.09 -51.93 -0.37 1.06 16 40 H 0.26 6.36 8.31 -40.82 -0.34 6.03 16 41 H 0.09 0.76 7.73 -51.93 -0.40 0.36 16 42 H 0.11 1.43 4.76 -51.93 -0.25 1.18 16 43 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.10 0.71 8.14 -51.92 -0.42 0.28 16 45 H 0.14 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.14 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 347.38 15.07 5.23 5.23 Total: -1.00 -31.93 347.38 -10.39 -42.32 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -6.54 Total: 4.41 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -0.95 Total: -9.45 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: -0.21 Total: -46.44 kcal Atomic # 8 Polarization: -40.63 SS G_CDS: -2.28 Total: -42.91 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.03 Total: 15.26 kcal Atomic # 16 Polarization: 32.19 SS G_CDS: -0.62 Total: 31.57 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.93 -10.39 -42.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029512246.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.014 kcal (2) G-P(sol) polarization free energy of solvation -31.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds