Wall clock time and date at job start Wed Apr 1 2020 00:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 110.28731 * 2 1 4 4 O 1.21280 * 119.99834 * 110.31541 * 3 2 1 5 5 N 1.34774 * 120.00122 * 290.31949 * 3 2 1 6 6 C 1.47163 * 120.70986 * 3.94366 * 5 3 2 7 7 C 1.54483 * 108.00672 * 132.63925 * 6 5 3 8 8 H 1.09006 * 112.35220 * 181.98729 * 7 6 5 9 9 C 1.54549 * 107.85365 * 306.76867 * 7 6 5 10 10 C 1.53733 * 104.95136 * 88.85903 * 9 7 6 11 11 C 1.54545 * 104.95760 * 359.97438 * 10 9 7 12 12 H 1.08999 * 112.68287 * 146.56368 * 11 10 9 13 13 C 1.47158 * 120.71196 * 183.92835 * 5 3 2 14 14 N 1.48303 * 106.89751 * 58.49323 * 7 6 5 15 15 C 1.36938 * 128.07877 * 106.80452 * 14 7 6 16 16 H 1.08007 * 119.99767 * 169.20730 * 15 14 7 17 17 C 1.38804 * 119.99946 * 349.20863 * 15 14 7 18 18 N 1.31617 * 120.00118 * 345.99048 * 17 15 14 19 19 Si 1.86807 * 120.00069 * 165.99575 * 17 15 14 20 20 H 1.48501 * 109.47050 * 180.02562 * 19 17 15 21 21 H 1.48499 * 109.46619 * 299.99902 * 19 17 15 22 22 H 1.48497 * 109.47151 * 59.99672 * 19 17 15 23 23 C 1.54166 * 110.39837 * 237.82791 * 2 1 3 24 24 C 1.53876 * 108.70244 * 213.14242 * 23 2 1 25 25 C 1.55049 * 106.62102 * 47.18757 * 24 23 2 26 26 S 1.82916 * 110.31994 * 122.11849 * 2 1 3 27 27 O 1.42102 * 109.35425 * 234.52101 * 26 2 1 28 28 O 1.42102 * 109.35295 * 7.59387 * 26 2 1 29 29 H 1.08997 * 109.47263 * 52.76439 * 1 2 3 30 30 H 1.08996 * 109.47519 * 172.76718 * 1 2 3 31 31 H 1.09004 * 109.46842 * 292.76867 * 1 2 3 32 32 H 1.09002 * 109.75168 * 252.37500 * 6 5 3 33 33 H 1.09002 * 109.75159 * 13.05441 * 6 5 3 34 34 H 1.08999 * 110.36138 * 207.57339 * 9 7 6 35 35 H 1.08998 * 110.36194 * 329.89149 * 9 7 6 36 36 H 1.08997 * 110.41482 * 241.06121 * 10 9 7 37 37 H 1.09007 * 110.20453 * 118.82143 * 10 9 7 38 38 H 1.08998 * 109.75504 * 107.62361 * 13 5 3 39 39 H 1.09005 * 109.74649 * 346.89061 * 13 5 3 40 40 H 0.96998 * 120.00200 * 179.97438 * 18 17 15 41 41 H 1.08996 * 109.65032 * 333.00091 * 23 2 1 42 42 H 1.09001 * 109.64786 * 93.29609 * 23 2 1 43 43 H 1.08993 * 110.03440 * 287.89301 * 24 23 2 44 44 H 1.09009 * 110.02628 * 166.47570 * 24 23 2 45 45 H 1.09007 * 110.78698 * 199.29583 * 25 24 23 46 46 H 1.08998 * 110.79071 * 75.83568 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0525 1.4135 0.0000 4 8 2.6048 1.8558 0.9850 5 7 1.9060 2.1861 -1.0945 6 6 1.1632 1.6959 -2.2665 7 6 0.1807 2.8038 -2.7069 8 1 -0.4339 2.5000 -3.5543 9 6 -0.6606 3.2080 -1.4751 10 6 0.1461 4.3248 -0.7929 11 6 1.4062 4.4996 -1.6703 12 1 1.7566 5.5313 -1.7019 13 6 2.4851 3.5381 -1.1431 14 7 0.9942 4.0068 -3.0074 15 6 1.2911 4.5411 -4.2328 16 1 1.7484 5.5172 -4.2999 17 6 1.0041 3.8282 -5.3887 18 7 0.7092 2.5475 -5.3159 19 14 1.0366 4.6863 -7.0477 20 1 0.6963 3.7121 -8.1156 21 1 0.0451 5.7918 -7.0526 22 1 2.3935 5.2372 -7.2935 23 6 2.0673 -0.7694 -1.2231 24 6 3.3832 -1.4637 -0.8302 25 6 3.1247 -2.1690 0.5261 26 16 2.1652 -0.9120 1.4528 27 8 3.0585 -0.0784 2.1784 28 8 1.0825 -1.5422 2.1235 29 1 -0.3633 0.6218 -0.8181 30 1 -0.3634 -1.0194 -0.1294 31 1 -0.3633 0.3977 0.9476 32 1 1.8579 1.4741 -3.0766 33 1 0.6080 0.7963 -2.0009 34 1 -1.6346 3.5843 -1.7879 35 1 -0.7794 2.3591 -0.8018 36 1 0.4262 4.0284 0.2179 37 1 -0.4328 5.2482 -0.7716 38 1 3.3452 3.5466 -1.8127 39 1 2.7932 3.8430 -0.1430 40 1 0.5083 2.0494 -6.1236 41 1 1.3378 -1.5165 -1.5356 42 1 2.2504 -0.0739 -2.0422 43 1 4.1771 -0.7249 -0.7215 44 1 3.6578 -2.1987 -1.5869 45 1 4.0643 -2.3894 1.0328 46 1 2.5380 -3.0767 0.3846 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029512246.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:49:36 Heat of formation + Delta-G solvation = -64.084616 kcal Electronic energy + Delta-G solvation = -31055.112556 eV Core-core repulsion = 27073.146583 eV Total energy + Delta-G solvation = -3981.965973 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.99453 -39.63221 -38.09925 -37.56414 -36.91873 -35.35253 -34.26161 -33.45261 -31.86961 -31.06942 -27.99549 -27.92886 -26.02319 -25.46332 -24.65551 -22.88870 -21.73279 -21.26120 -20.47582 -19.59148 -18.69000 -17.64295 -17.56970 -17.39434 -16.98423 -16.61209 -16.44752 -15.94561 -15.63300 -15.40247 -15.33897 -14.87265 -14.64600 -14.63647 -14.51461 -14.04028 -13.66068 -13.60859 -13.41348 -13.28453 -13.17570 -13.04470 -12.97683 -12.80675 -12.62111 -12.53196 -12.52028 -12.42881 -11.98927 -11.98564 -11.83955 -11.60521 -11.47909 -11.31833 -11.14816 -11.09349 -10.85651 -10.43773 -9.71583 -8.71750 -7.84287 -5.14112 -0.96985 1.48306 1.51655 1.54107 1.58493 1.60443 1.96295 2.52788 2.65870 2.95776 3.32299 3.34477 3.47012 3.52431 3.60123 3.68311 3.93288 4.08175 4.10486 4.11981 4.19452 4.31410 4.41581 4.50287 4.51120 4.58636 4.63181 4.67138 4.76438 4.79490 4.91837 4.96586 5.01842 5.03570 5.04334 5.08331 5.10020 5.26657 5.32203 5.35931 5.55744 5.61825 5.83051 6.24546 6.50013 7.09671 7.10866 7.74276 8.52801 9.27314 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.019633 B = 0.004087 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.853508 B = 6849.532595 C = 7359.350013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.550 4.550 3 C 0.530 3.470 4 O -0.559 6.559 5 N -0.579 5.579 6 C 0.104 3.896 7 C 0.158 3.842 8 H 0.097 0.903 9 C -0.134 4.134 10 C -0.117 4.117 11 C 0.131 3.869 12 H 0.081 0.919 13 C 0.105 3.895 14 N -0.603 5.603 15 C -0.236 4.236 16 H 0.072 0.928 17 C -0.044 4.044 18 N -0.928 5.928 19 Si 0.964 3.036 20 H -0.293 1.293 21 H -0.287 1.287 22 H -0.285 1.285 23 C -0.126 4.126 24 C -0.120 4.120 25 C -0.555 4.555 26 S 2.390 3.610 27 O -0.951 6.951 28 O -0.960 6.960 29 H 0.092 0.908 30 H 0.116 0.884 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.110 0.890 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.049 0.951 39 H 0.079 0.921 40 H 0.251 0.749 41 H 0.133 0.867 42 H 0.095 0.905 43 H 0.070 0.930 44 H 0.134 0.866 45 H 0.157 0.843 46 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.474 -11.637 6.811 13.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.641 4.641 3 C 0.316 3.684 4 O -0.439 6.439 5 N -0.310 5.310 6 C -0.019 4.019 7 C 0.050 3.950 8 H 0.115 0.885 9 C -0.173 4.173 10 C -0.156 4.156 11 C 0.023 3.977 12 H 0.099 0.901 13 C -0.020 4.020 14 N -0.324 5.324 15 C -0.365 4.365 16 H 0.089 0.911 17 C -0.239 4.239 18 N -0.575 5.575 19 Si 0.794 3.206 20 H -0.219 1.219 21 H -0.214 1.214 22 H -0.212 1.212 23 C -0.164 4.164 24 C -0.158 4.158 25 C -0.688 4.688 26 S 2.574 3.426 27 O -0.948 6.948 28 O -0.957 6.957 29 H 0.110 0.890 30 H 0.134 0.866 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.127 0.873 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.098 0.902 40 H 0.060 0.940 41 H 0.151 0.849 42 H 0.114 0.886 43 H 0.089 0.911 44 H 0.153 0.847 45 H 0.175 0.825 46 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 0.602 -11.230 8.020 13.813 hybrid contribution 0.327 0.872 -1.814 2.039 sum 0.930 -10.358 6.206 12.110 Atomic orbital electron populations 1.21995 0.86397 1.06844 1.04350 1.30323 1.08661 1.03446 1.21625 1.19714 0.79407 0.86418 0.82862 1.90891 1.45181 1.74386 1.33424 1.48015 1.52614 1.15050 1.15357 1.22907 0.95052 0.98498 0.85415 1.22118 0.91320 0.86794 0.94723 0.88519 1.22595 0.98476 0.98491 0.97743 1.22302 0.96552 0.98956 0.97748 1.22099 0.93447 0.96134 0.86034 0.90108 1.22244 0.96356 0.82720 1.00640 1.45352 1.57316 1.29824 0.99923 1.19183 1.35456 0.99194 0.82655 0.91054 1.25259 1.02808 0.96070 0.99782 1.69927 1.53563 1.06384 1.27645 0.85392 0.77489 0.77367 0.80378 1.21934 1.21427 1.21184 1.22665 0.98654 1.00291 0.94782 1.22293 0.97198 1.00416 0.95923 1.30523 1.15113 1.14143 1.09057 1.09287 0.76866 0.78497 0.77918 1.93632 1.64756 1.67015 1.69361 1.93538 1.55163 1.75448 1.71555 0.88982 0.86553 0.91752 0.92595 0.87254 0.92436 0.90697 0.92181 0.91785 0.93276 0.90246 0.93984 0.84903 0.88627 0.91111 0.84739 0.82538 0.80732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 7.35 71.98 0.53 -2.46 16 2 C -0.55 -13.60 0.74 -11.15 -0.01 -13.61 16 3 C 0.53 17.99 6.54 87.66 0.57 18.57 16 4 O -0.56 -23.27 13.55 19.86 0.27 -23.00 16 5 N -0.58 -20.26 2.20 -813.93 -1.79 -22.06 16 6 C 0.10 3.64 3.64 86.76 0.32 3.95 16 7 C 0.16 6.34 3.21 45.68 0.15 6.48 16 8 H 0.10 4.47 6.21 -2.38 -0.01 4.46 16 9 C -0.13 -4.57 6.16 31.37 0.19 -4.38 16 10 C -0.12 -4.00 6.16 31.37 0.19 -3.81 16 11 C 0.13 5.04 4.32 45.44 0.20 5.23 16 12 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 13 C 0.11 3.97 5.91 86.53 0.51 4.49 16 14 N -0.60 -27.15 2.81 -635.63 -1.78 -28.93 16 15 C -0.24 -11.92 10.36 84.03 0.87 -11.05 16 16 H 0.07 3.58 7.87 -2.91 -0.02 3.55 16 17 C -0.04 -2.23 5.39 84.86 0.46 -1.77 16 18 N -0.93 -47.26 10.70 21.65 0.23 -47.03 16 19 Si 0.96 42.05 29.58 68.60 2.03 44.08 16 20 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 21 H -0.29 -12.52 7.11 99.48 0.71 -11.82 16 22 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 23 C -0.13 -2.27 4.42 31.28 0.14 -2.13 16 24 C -0.12 -1.73 6.48 31.59 0.20 -1.52 16 25 C -0.55 -7.17 7.31 72.68 0.53 -6.64 16 26 S 2.39 60.12 5.75 -56.49 -0.32 59.80 16 27 O -0.95 -34.17 15.35 -118.49 -1.82 -35.99 16 28 O -0.96 -27.22 17.29 -127.47 -2.20 -29.42 16 29 H 0.09 2.06 3.43 -2.39 -0.01 2.05 16 30 H 0.12 1.72 7.95 -2.39 -0.02 1.70 16 31 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 32 H 0.06 2.29 7.52 -2.39 -0.02 2.27 16 33 H 0.11 3.06 3.30 -2.39 -0.01 3.05 16 34 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.07 2.23 5.57 -2.39 -0.01 2.22 16 36 H 0.06 2.03 7.84 -2.39 -0.02 2.01 16 37 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 38 H 0.05 1.97 8.14 -2.39 -0.02 1.96 16 39 H 0.08 2.97 7.09 -2.38 -0.02 2.95 16 40 H 0.25 12.57 8.31 -92.71 -0.77 11.80 16 41 H 0.13 1.42 7.73 -2.39 -0.02 1.40 16 42 H 0.10 2.19 4.76 -2.39 -0.01 2.18 16 43 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.13 1.15 8.14 -2.38 -0.02 1.13 16 45 H 0.16 1.57 8.14 -2.38 -0.02 1.56 16 46 H 0.17 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -72.22 347.38 0.46 -71.75 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: 1.01 Total: 19.45 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: 4.85 Total: -8.65 kcal Atomic # 7 Polarization: -94.68 SS G_CDS: -3.34 Total: -98.02 kcal Atomic # 8 Polarization: -84.66 SS G_CDS: -3.75 Total: -88.41 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Atomic # 16 Polarization: 60.12 SS G_CDS: -0.32 Total: 59.80 kcal Total: -72.22 0.46 -71.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029512246.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.669 kcal (2) G-P(sol) polarization free energy of solvation -72.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds