Wall clock time and date at job start Wed Apr 1 2020 01:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50691 * 109.47575 * 2 1 4 4 C 1.32999 * 119.99850 * 126.04751 * 3 2 1 5 5 C 1.50695 * 119.99948 * 6.04662 * 4 3 2 6 6 C 1.47099 * 119.99794 * 186.04099 * 4 3 2 7 7 O 1.21615 * 120.00337 * 0.02562 * 6 4 3 8 8 N 1.34782 * 119.99916 * 180.02562 * 6 4 3 9 9 C 1.47575 * 134.49248 * 179.97438 * 8 6 4 10 10 C 1.53944 * 86.11686 * 155.36291 * 9 8 6 11 11 O 1.42898 * 113.74152 * 269.15440 * 10 9 8 12 12 C 1.53002 * 113.74572 * 137.95254 * 10 9 8 13 13 N 1.46492 * 109.47410 * 185.00065 * 12 10 9 14 14 C 1.34777 * 120.00045 * 179.72402 * 13 12 10 15 15 O 1.21279 * 119.99857 * 0.27841 * 14 13 12 16 16 C 1.50702 * 119.99797 * 180.27401 * 14 13 12 17 17 S 1.81004 * 109.47065 * 180.02562 * 16 14 13 18 18 C 1.76197 * 100.00287 * 180.02562 * 17 16 14 19 19 H 1.08008 * 119.99670 * 359.97438 * 18 17 16 20 20 C 1.38792 * 120.00247 * 180.02562 * 18 17 16 21 21 N 1.31631 * 120.00365 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 119.99840 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.47149 * 90.00400 * 22 20 18 24 24 H 1.48496 * 109.46950 * 210.00229 * 22 20 18 25 25 H 1.48498 * 109.47290 * 330.00105 * 22 20 18 26 26 C 1.47581 * 134.49005 * 0.02562 * 8 6 4 27 27 H 1.08999 * 109.46965 * 59.99423 * 1 2 3 28 28 H 1.08991 * 109.47662 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46497 * 299.99973 * 1 2 3 30 30 H 1.09006 * 109.46497 * 240.00027 * 2 1 3 31 31 H 1.08999 * 109.46965 * 120.00577 * 2 1 3 32 32 H 1.08003 * 120.00397 * 306.05427 * 3 2 1 33 33 H 1.08998 * 109.47481 * 264.69511 * 5 4 3 34 34 H 1.09005 * 109.47099 * 24.69644 * 5 4 3 35 35 H 1.09002 * 109.47231 * 144.69448 * 5 4 3 36 36 H 1.08999 * 113.77181 * 41.06199 * 9 8 6 37 37 H 1.08998 * 113.87411 * 269.67591 * 9 8 6 38 38 H 0.96699 * 114.00503 * 178.07068 * 11 10 9 39 39 H 1.08997 * 109.46774 * 64.99692 * 12 10 9 40 40 H 1.08999 * 109.46848 * 305.00683 * 12 10 9 41 41 H 0.97001 * 119.99849 * 0.02562 * 13 12 10 42 42 H 1.09001 * 109.47385 * 300.00087 * 16 14 13 43 43 H 1.08994 * 109.47266 * 60.00396 * 16 14 13 44 44 H 0.96999 * 120.00318 * 179.97438 * 21 20 18 45 45 H 1.08997 * 113.77039 * 90.33363 * 26 8 6 46 46 H 1.09004 * 113.76870 * 318.93353 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 6 2.8932 1.8216 0.9313 5 6 3.4708 0.8248 1.9026 6 6 3.2813 3.2381 1.0130 7 8 2.8149 4.0427 0.2294 8 7 4.1540 3.6444 1.9565 9 6 4.7512 4.9434 2.3222 10 6 4.9351 4.3444 3.7284 11 8 3.8314 4.5829 4.6042 12 6 6.2856 4.6751 4.3671 13 7 6.4093 3.9655 5.6427 14 6 7.5264 4.1022 6.3843 15 8 8.4270 4.8166 5.9979 16 6 7.6562 3.3674 7.6936 17 16 9.2562 3.7540 8.4464 18 6 9.1433 2.7904 9.9172 19 1 8.2583 2.2023 10.1108 20 6 10.1910 2.7879 10.8274 21 7 10.1069 2.0676 11.9259 22 14 11.7213 3.8057 10.4928 23 1 11.5497 5.1625 11.0716 24 1 12.8988 3.1478 11.1140 25 1 11.9319 3.9158 9.0270 26 6 4.8967 2.9686 3.0380 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0275 0.0005 29 1 -0.3632 0.5139 0.8901 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.6935 2.1134 -0.7561 33 1 2.8832 0.8294 2.8206 34 1 3.4450 -0.1710 1.4598 35 1 4.5022 1.0946 2.1300 36 1 4.0481 5.7755 2.2877 37 1 5.6891 5.1576 1.8099 38 1 3.9300 4.1832 5.4791 39 1 6.3520 5.7491 4.5407 40 1 7.0891 4.3647 3.6992 41 1 5.6890 3.3939 5.9516 42 1 6.8550 3.6767 8.3649 43 1 7.5876 2.2942 7.5163 44 1 10.8393 2.0655 12.5619 45 1 5.8772 2.6016 2.7348 46 1 4.3097 2.2236 3.5751 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041568008.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:44:42 Heat of formation + Delta-G solvation = -66.327898 kcal Electronic energy + Delta-G solvation = -26758.906945 eV Core-core repulsion = 22776.843696 eV Total energy + Delta-G solvation = -3982.063249 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.28728 -39.54590 -38.71054 -36.51486 -35.85219 -34.38769 -32.49638 -32.46136 -30.71249 -29.20878 -27.89625 -26.50420 -26.34386 -25.63072 -24.15424 -21.47806 -20.79419 -20.30489 -18.78875 -18.33065 -17.41815 -17.04817 -16.90781 -16.53864 -16.01565 -15.67418 -15.52812 -15.05030 -14.87202 -14.77159 -14.38607 -14.18002 -14.08655 -13.82448 -13.65852 -13.42452 -13.28072 -13.03284 -12.99290 -12.84865 -12.60580 -12.51567 -12.10465 -12.04741 -11.77564 -11.45727 -11.32414 -11.24536 -11.05817 -10.68974 -10.67466 -10.04795 -9.91597 -9.70638 -9.51391 -9.25840 -9.08047 -9.05467 -8.57982 -6.99278 -6.34423 -4.07176 0.96402 2.31817 2.60160 2.79604 2.89960 3.12533 3.28900 3.30622 3.45510 3.51962 3.71134 3.95395 4.19872 4.27686 4.41998 4.49761 4.57949 4.64736 4.69580 4.76511 4.81230 4.85946 4.92584 5.04678 5.09537 5.10568 5.17477 5.20611 5.22329 5.29898 5.35360 5.41156 5.47242 5.51641 5.54065 5.64938 5.70346 5.89473 6.06018 6.09445 6.20754 7.01651 7.23313 7.32742 7.80014 7.88341 8.28652 8.35574 9.11576 10.74657 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.020982 B = 0.001864 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.170140 B =15014.291997 C =15856.700970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.109 4.109 3 C -0.069 4.069 4 C -0.184 4.184 5 C -0.127 4.127 6 C 0.581 3.419 7 O -0.544 6.544 8 N -0.633 5.633 9 C 0.126 3.874 10 C 0.085 3.915 11 O -0.526 6.526 12 C 0.105 3.895 13 N -0.739 5.739 14 C 0.534 3.466 15 O -0.513 6.513 16 C -0.125 4.125 17 S -0.140 6.140 18 C -0.523 4.523 19 H 0.089 0.911 20 C 0.096 3.904 21 N -0.879 5.879 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.072 3.928 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.126 0.874 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.382 0.618 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.396 0.604 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.271 0.729 45 H 0.101 0.899 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.913 -3.684 -21.994 27.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.146 4.146 3 C -0.088 4.088 4 C -0.186 4.186 5 C -0.183 4.183 6 C 0.373 3.627 7 O -0.423 6.423 8 N -0.368 5.368 9 C 0.003 3.997 10 C 0.042 3.958 11 O -0.332 6.332 12 C -0.020 4.020 13 N -0.396 5.396 14 C 0.320 3.680 15 O -0.387 6.387 16 C -0.276 4.276 17 S 0.086 5.914 18 C -0.671 4.671 19 H 0.107 0.893 20 C -0.113 4.113 21 N -0.515 5.515 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.051 4.051 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.144 0.856 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.114 0.886 37 H 0.123 0.877 38 H 0.231 0.769 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.230 0.770 42 H 0.117 0.883 43 H 0.117 0.883 44 H 0.081 0.919 45 H 0.119 0.881 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -15.938 -1.855 -23.553 28.499 hybrid contribution -0.443 -1.098 1.249 1.721 sum -16.381 -2.953 -22.304 27.830 Atomic orbital electron populations 1.21693 0.94238 1.02117 1.02438 1.20895 0.96748 0.93476 1.03488 1.23612 0.92247 0.97516 0.95463 1.21299 1.02844 0.93111 1.01392 1.21169 1.01060 0.97824 0.98253 1.18029 0.77804 0.88419 0.78439 1.90797 1.55178 1.55425 1.40904 1.49530 1.43117 1.11404 1.32710 1.23179 0.99171 0.88681 0.88681 1.23032 0.86480 0.95409 0.90844 1.86596 1.40935 1.78225 1.27427 1.21812 0.95429 0.98886 0.85915 1.45868 1.20521 1.51073 1.22100 1.20304 0.81150 0.81301 0.85266 1.90724 1.38823 1.37850 1.71258 1.23282 1.05257 1.03184 0.95849 1.84835 1.16932 1.64546 1.25110 1.22297 1.08078 1.32278 1.04405 0.89340 1.24712 0.98136 0.94594 0.93835 1.69933 1.33035 1.38908 1.09656 0.86740 0.82645 0.80875 0.81609 1.19184 1.19902 1.15948 1.24250 0.97215 0.97089 0.86562 0.92326 0.92028 0.92394 0.90155 0.90206 0.85628 0.91046 0.90735 0.90875 0.88580 0.87663 0.76869 0.89823 0.89749 0.76997 0.88346 0.88325 0.91884 0.88082 0.88492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.90 37.16 0.37 -0.34 16 2 C -0.11 -0.56 6.00 -27.89 -0.17 -0.73 16 3 C -0.07 -0.53 9.08 -36.13 -0.33 -0.86 16 4 C -0.18 -1.58 5.99 -102.85 -0.62 -2.20 16 5 C -0.13 -0.73 7.70 36.00 0.28 -0.46 16 6 C 0.58 6.69 7.98 -12.66 -0.10 6.59 16 7 O -0.54 -8.28 16.96 5.26 0.09 -8.19 16 8 N -0.63 -5.82 3.61 -179.65 -0.65 -6.47 16 9 C 0.13 1.02 8.24 -2.98 -0.02 0.99 16 10 C 0.09 0.59 1.52 -89.67 -0.14 0.46 16 11 O -0.53 -4.11 13.51 -35.23 -0.48 -4.59 16 12 C 0.10 0.87 5.28 -4.04 -0.02 0.84 16 13 N -0.74 -6.96 5.34 -60.30 -0.32 -7.28 16 14 C 0.53 8.12 7.85 -10.98 -0.09 8.03 16 15 O -0.51 -9.97 15.86 5.56 0.09 -9.89 16 16 C -0.13 -2.15 6.16 36.01 0.22 -1.93 16 17 S -0.14 -3.37 18.55 -107.50 -1.99 -5.36 16 18 C -0.52 -14.47 10.04 30.94 0.31 -14.16 16 19 H 0.09 2.54 8.03 -52.48 -0.42 2.12 16 20 C 0.10 2.73 5.50 -17.43 -0.10 2.63 16 21 N -0.88 -25.83 13.97 55.49 0.78 -25.05 16 22 Si 0.86 21.16 27.74 -169.99 -4.71 16.44 16 23 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.24 -5.79 6.74 56.52 0.38 -5.41 16 26 C 0.07 0.44 5.63 -2.96 -0.02 0.42 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.36 5.59 -51.93 -0.29 0.07 16 32 H 0.13 1.11 7.51 -52.48 -0.39 0.72 16 33 H 0.07 0.37 7.85 -51.93 -0.41 -0.03 16 34 H 0.07 0.34 6.10 -51.93 -0.32 0.03 16 35 H 0.07 0.39 5.27 -51.93 -0.27 0.11 16 36 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.11 0.66 8.10 -51.93 -0.42 0.24 16 38 H 0.38 1.77 7.61 45.56 0.35 2.12 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.08 0.70 8.04 -51.93 -0.42 0.28 16 41 H 0.40 2.42 7.31 -40.82 -0.30 2.12 16 42 H 0.10 1.56 8.14 -51.92 -0.42 1.13 16 43 H 0.10 1.54 8.14 -51.92 -0.42 1.12 16 44 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.10 0.50 7.96 -51.93 -0.41 0.09 16 46 H 0.10 0.47 6.28 -51.93 -0.33 0.15 16 LS Contribution 392.42 15.07 5.91 5.91 Total: -1.00 -37.32 392.42 -7.87 -45.19 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -6.17 Total: 0.00 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -0.42 Total: -0.71 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: -0.19 Total: -38.80 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.30 Total: -22.67 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.71 Total: 16.44 kcal Atomic # 16 Polarization: -3.37 SS G_CDS: -1.99 Total: -5.36 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -37.32 -7.87 -45.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041568008.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.138 kcal (2) G-P(sol) polarization free energy of solvation -37.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds