Wall clock time and date at job start Wed Apr 1 2020 01:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50691 * 109.47575 * 2 1 4 4 C 1.32999 * 119.99850 * 126.04751 * 3 2 1 5 5 C 1.50695 * 119.99948 * 6.04662 * 4 3 2 6 6 C 1.47099 * 119.99794 * 186.04099 * 4 3 2 7 7 O 1.21615 * 120.00337 * 0.02562 * 6 4 3 8 8 N 1.34782 * 119.99916 * 180.02562 * 6 4 3 9 9 C 1.47575 * 134.49248 * 179.97438 * 8 6 4 10 10 C 1.53944 * 86.11686 * 155.36291 * 9 8 6 11 11 O 1.42898 * 113.74152 * 269.15440 * 10 9 8 12 12 C 1.53002 * 113.74572 * 137.95254 * 10 9 8 13 13 N 1.46492 * 109.47410 * 185.00065 * 12 10 9 14 14 C 1.34777 * 120.00045 * 179.72402 * 13 12 10 15 15 O 1.21279 * 119.99857 * 0.27841 * 14 13 12 16 16 C 1.50702 * 119.99797 * 180.27401 * 14 13 12 17 17 S 1.81004 * 109.47065 * 180.02562 * 16 14 13 18 18 C 1.76197 * 100.00287 * 180.02562 * 17 16 14 19 19 H 1.08008 * 119.99670 * 359.97438 * 18 17 16 20 20 C 1.38792 * 120.00247 * 180.02562 * 18 17 16 21 21 N 1.31631 * 120.00365 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 119.99840 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.47149 * 90.00400 * 22 20 18 24 24 H 1.48496 * 109.46950 * 210.00229 * 22 20 18 25 25 H 1.48498 * 109.47290 * 330.00105 * 22 20 18 26 26 C 1.47581 * 134.49005 * 0.02562 * 8 6 4 27 27 H 1.08999 * 109.46965 * 59.99423 * 1 2 3 28 28 H 1.08991 * 109.47662 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46497 * 299.99973 * 1 2 3 30 30 H 1.09006 * 109.46497 * 240.00027 * 2 1 3 31 31 H 1.08999 * 109.46965 * 120.00577 * 2 1 3 32 32 H 1.08003 * 120.00397 * 306.05427 * 3 2 1 33 33 H 1.08998 * 109.47481 * 264.69511 * 5 4 3 34 34 H 1.09005 * 109.47099 * 24.69644 * 5 4 3 35 35 H 1.09002 * 109.47231 * 144.69448 * 5 4 3 36 36 H 1.08999 * 113.77181 * 41.06199 * 9 8 6 37 37 H 1.08998 * 113.87411 * 269.67591 * 9 8 6 38 38 H 0.96699 * 114.00503 * 178.07068 * 11 10 9 39 39 H 1.08997 * 109.46774 * 64.99692 * 12 10 9 40 40 H 1.08999 * 109.46848 * 305.00683 * 12 10 9 41 41 H 0.97001 * 119.99849 * 0.02562 * 13 12 10 42 42 H 1.09001 * 109.47385 * 300.00087 * 16 14 13 43 43 H 1.08994 * 109.47266 * 60.00396 * 16 14 13 44 44 H 0.96999 * 120.00318 * 179.97438 * 21 20 18 45 45 H 1.08997 * 113.77039 * 90.33363 * 26 8 6 46 46 H 1.09004 * 113.76870 * 318.93353 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 6 2.8932 1.8216 0.9313 5 6 3.4708 0.8248 1.9026 6 6 3.2813 3.2381 1.0130 7 8 2.8149 4.0427 0.2294 8 7 4.1540 3.6444 1.9565 9 6 4.7512 4.9434 2.3222 10 6 4.9351 4.3444 3.7284 11 8 3.8314 4.5829 4.6042 12 6 6.2856 4.6751 4.3671 13 7 6.4093 3.9655 5.6427 14 6 7.5264 4.1022 6.3843 15 8 8.4270 4.8166 5.9979 16 6 7.6562 3.3674 7.6936 17 16 9.2562 3.7540 8.4464 18 6 9.1433 2.7904 9.9172 19 1 8.2583 2.2023 10.1108 20 6 10.1910 2.7879 10.8274 21 7 10.1069 2.0676 11.9259 22 14 11.7213 3.8057 10.4928 23 1 11.5497 5.1625 11.0716 24 1 12.8988 3.1478 11.1140 25 1 11.9319 3.9158 9.0270 26 6 4.8967 2.9686 3.0380 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0275 0.0005 29 1 -0.3632 0.5139 0.8901 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.6935 2.1134 -0.7561 33 1 2.8832 0.8294 2.8206 34 1 3.4450 -0.1710 1.4598 35 1 4.5022 1.0946 2.1300 36 1 4.0481 5.7755 2.2877 37 1 5.6891 5.1576 1.8099 38 1 3.9300 4.1832 5.4791 39 1 6.3520 5.7491 4.5407 40 1 7.0891 4.3647 3.6992 41 1 5.6890 3.3939 5.9516 42 1 6.8550 3.6767 8.3649 43 1 7.5876 2.2942 7.5163 44 1 10.8393 2.0655 12.5619 45 1 5.8772 2.6016 2.7348 46 1 4.3097 2.2236 3.5751 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041568008.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:44:41 Heat of formation + Delta-G solvation = -95.915946 kcal Electronic energy + Delta-G solvation = -26760.189979 eV Core-core repulsion = 22776.843696 eV Total energy + Delta-G solvation = -3983.346283 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.98456 -40.60657 -39.59405 -37.10204 -36.59119 -35.34396 -34.63843 -32.97562 -31.73573 -30.19468 -28.40966 -27.86695 -27.09091 -27.04007 -24.68618 -22.14534 -21.88131 -20.90989 -20.00773 -19.36522 -18.55567 -17.81007 -17.72323 -17.59008 -17.08287 -16.70305 -16.68323 -16.43474 -15.85015 -15.45038 -15.34621 -14.98515 -14.97418 -14.82229 -14.69011 -14.43144 -14.17865 -14.03874 -13.83993 -13.51451 -13.32298 -13.25661 -13.08757 -12.99383 -12.97990 -12.68100 -12.58689 -12.26950 -12.06399 -11.83832 -11.68647 -11.36077 -11.14551 -11.01791 -10.75308 -10.48679 -10.20153 -10.17099 -9.72605 -8.95447 -8.48755 -6.18726 0.29985 1.02179 1.33737 1.48747 1.56643 1.58948 1.66949 2.11519 2.18990 2.27211 2.73344 2.75241 2.89951 3.08265 3.35074 3.57236 3.81736 3.91242 3.97462 4.11784 4.23864 4.25604 4.29991 4.38334 4.41421 4.43951 4.52037 4.54233 4.60465 4.68540 4.70063 4.79865 4.81791 4.84522 5.03500 5.04163 5.12508 5.28862 5.31940 5.51712 5.57785 5.73563 6.15005 6.38592 6.52267 6.60417 6.97084 6.99595 7.18803 8.63282 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.020982 B = 0.001864 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.170140 B =15014.291997 C =15856.700970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.104 4.104 3 C -0.067 4.067 4 C -0.197 4.197 5 C -0.123 4.123 6 C 0.567 3.433 7 O -0.598 6.598 8 N -0.636 5.636 9 C 0.113 3.887 10 C 0.102 3.898 11 O -0.542 6.542 12 C 0.110 3.890 13 N -0.710 5.710 14 C 0.541 3.459 15 O -0.559 6.559 16 C -0.112 4.112 17 S -0.180 6.180 18 C -0.526 4.526 19 H 0.065 0.935 20 C 0.045 3.955 21 N -0.917 5.917 22 Si 0.913 3.087 23 H -0.265 1.265 24 H -0.262 1.262 25 H -0.235 1.235 26 C 0.077 3.923 27 H 0.053 0.947 28 H 0.076 0.924 29 H 0.049 0.951 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.124 0.876 38 H 0.396 0.604 39 H 0.074 0.926 40 H 0.093 0.907 41 H 0.416 0.584 42 H 0.116 0.884 43 H 0.119 0.881 44 H 0.276 0.724 45 H 0.122 0.878 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.140 -4.923 -22.610 28.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.141 4.141 3 C -0.087 4.087 4 C -0.200 4.200 5 C -0.179 4.179 6 C 0.361 3.639 7 O -0.481 6.481 8 N -0.369 5.369 9 C -0.010 4.010 10 C 0.059 3.941 11 O -0.350 6.350 12 C -0.015 4.015 13 N -0.365 5.365 14 C 0.326 3.674 15 O -0.437 6.437 16 C -0.263 4.263 17 S 0.046 5.954 18 C -0.674 4.674 19 H 0.083 0.917 20 C -0.160 4.160 21 N -0.555 5.555 22 Si 0.735 3.265 23 H -0.190 1.190 24 H -0.187 1.187 25 H -0.159 1.159 26 C -0.045 4.045 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.068 0.932 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.123 0.877 33 H 0.098 0.902 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.142 0.858 38 H 0.248 0.752 39 H 0.092 0.908 40 H 0.111 0.889 41 H 0.254 0.746 42 H 0.134 0.866 43 H 0.138 0.862 44 H 0.085 0.915 45 H 0.140 0.860 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -16.198 -3.133 -24.139 29.238 hybrid contribution -0.559 -0.701 1.364 1.633 sum -16.757 -3.834 -22.775 28.534 Atomic orbital electron populations 1.21707 0.94076 1.02883 1.01881 1.20936 0.96765 0.91663 1.04698 1.23771 0.91708 0.98674 0.94573 1.21447 1.03591 0.92195 1.02718 1.21207 1.01282 0.97542 0.97840 1.18627 0.77737 0.89369 0.78188 1.90756 1.57294 1.56962 1.43125 1.49646 1.42440 1.12359 1.32417 1.23390 0.99538 0.88138 0.89891 1.22774 0.85468 0.95862 0.89964 1.86594 1.41204 1.78704 1.28506 1.21848 0.96365 0.98182 0.85066 1.45499 1.19168 1.50239 1.21641 1.19883 0.81993 0.80657 0.84836 1.90722 1.40851 1.39947 1.72152 1.23281 1.01198 1.04891 0.96911 1.84780 1.22588 1.64144 1.23839 1.22471 1.07075 1.31922 1.05922 0.91685 1.25545 1.00998 0.95697 0.93790 1.70014 1.34266 1.40528 1.10717 0.85890 0.79688 0.79472 0.81463 1.18957 1.18661 1.15892 1.24490 0.98098 0.96784 0.85142 0.92737 0.90550 0.93187 0.88904 0.88867 0.87706 0.90167 0.89237 0.90135 0.90327 0.85793 0.75218 0.90812 0.88926 0.74591 0.86603 0.86238 0.91481 0.86038 0.86527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.90 71.98 0.71 -0.52 16 2 C -0.10 -0.88 6.00 29.85 0.18 -0.70 16 3 C -0.07 -1.02 9.08 24.52 0.22 -0.79 16 4 C -0.20 -3.18 5.99 -18.71 -0.11 -3.29 16 5 C -0.12 -1.05 7.70 71.23 0.55 -0.50 16 6 C 0.57 13.03 7.98 86.57 0.69 13.72 16 7 O -0.60 -19.11 16.96 -4.08 -0.07 -19.18 16 8 N -0.64 -10.83 3.61 -844.38 -3.05 -13.88 16 9 C 0.11 1.71 8.24 86.48 0.71 2.42 16 10 C 0.10 1.15 1.52 -10.12 -0.02 1.14 16 11 O -0.54 -7.09 13.51 -148.98 -2.01 -9.10 16 12 C 0.11 1.50 5.28 86.38 0.46 1.96 16 13 N -0.71 -10.85 5.34 -463.08 -2.47 -13.32 16 14 C 0.54 15.00 7.85 87.66 0.69 15.69 16 15 O -0.56 -20.79 15.86 -3.03 -0.05 -20.84 16 16 C -0.11 -3.57 6.16 71.24 0.44 -3.14 16 17 S -0.18 -8.46 18.55 -56.49 -1.05 -9.51 16 18 C -0.53 -29.11 10.04 67.95 0.68 -28.43 16 19 H 0.06 3.77 8.03 -2.91 -0.02 3.75 16 20 C 0.05 2.55 5.50 84.86 0.47 3.02 16 21 N -0.92 -54.26 13.97 21.65 0.30 -53.96 16 22 Si 0.91 43.55 27.74 68.60 1.90 45.46 16 23 H -0.26 -12.41 7.11 99.48 0.71 -11.71 16 24 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 25 H -0.24 -11.12 6.74 99.48 0.67 -10.45 16 26 C 0.08 0.68 5.63 86.49 0.49 1.17 16 27 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 30 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.09 0.56 5.59 -2.39 -0.01 0.55 16 32 H 0.10 1.99 7.51 -2.91 -0.02 1.97 16 33 H 0.08 0.56 7.85 -2.39 -0.02 0.54 16 34 H 0.09 0.51 6.10 -2.38 -0.01 0.49 16 35 H 0.08 0.55 5.27 -2.39 -0.01 0.54 16 36 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.12 1.37 8.10 -2.39 -0.02 1.35 16 38 H 0.40 2.31 7.61 -74.06 -0.56 1.75 16 39 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.09 1.23 8.04 -2.39 -0.02 1.21 16 41 H 0.42 3.23 7.31 -92.71 -0.68 2.55 16 42 H 0.12 3.34 8.14 -2.40 -0.02 3.32 16 43 H 0.12 3.36 8.14 -2.40 -0.02 3.34 16 44 H 0.28 15.15 8.31 -92.71 -0.77 14.38 16 45 H 0.12 0.68 7.96 -2.39 -0.02 0.66 16 46 H 0.12 0.64 6.28 -2.38 -0.01 0.62 16 Total: -1.00 -83.64 392.42 -0.59 -84.24 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -0.26 Total: 8.35 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: 6.16 Total: 1.75 kcal Atomic # 7 Polarization: -75.95 SS G_CDS: -5.21 Total: -81.16 kcal Atomic # 8 Polarization: -47.00 SS G_CDS: -2.13 Total: -49.13 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 1.90 Total: 45.46 kcal Atomic # 16 Polarization: -8.46 SS G_CDS: -1.05 Total: -9.51 kcal Total: -83.64 -0.59 -84.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041568008.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.680 kcal (2) G-P(sol) polarization free energy of solvation -83.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds