Wall clock time and date at job start Wed Apr 1 2020 01:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47543 * 2 1 4 4 C 1.50694 * 115.54904 * 294.73858 * 3 2 1 5 5 O 1.21283 * 120.00458 * 99.63978 * 4 3 2 6 6 N 1.34783 * 120.00106 * 279.36809 * 4 3 2 7 7 C 1.47065 * 136.05257 * 354.87671 * 6 4 3 8 8 C 1.53241 * 88.08220 * 207.20183 * 7 6 4 9 9 O 1.42898 * 114.19590 * 87.72445 * 8 7 6 10 10 C 1.52999 * 114.32471 * 220.47113 * 8 7 6 11 11 N 1.46498 * 109.47143 * 278.75443 * 10 8 7 12 12 C 1.34779 * 120.00216 * 180.02562 * 11 10 8 13 13 O 1.21277 * 119.99847 * 359.97438 * 12 11 10 14 14 C 1.50697 * 120.00020 * 180.02562 * 12 11 10 15 15 S 1.80999 * 109.47093 * 179.97438 * 14 12 11 16 16 C 1.76200 * 100.00054 * 179.97438 * 15 14 12 17 17 H 1.07995 * 120.00006 * 359.97438 * 16 15 14 18 18 C 1.38796 * 119.99940 * 179.97438 * 16 15 14 19 19 N 1.31633 * 120.00003 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99979 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46747 * 90.00374 * 20 18 16 22 22 H 1.48505 * 109.47177 * 210.00225 * 20 18 16 23 23 H 1.48502 * 109.47021 * 330.00371 * 20 18 16 24 24 C 1.47062 * 136.05986 * 175.24000 * 6 4 3 25 25 C 1.52999 * 117.51638 * 80.43797 * 3 2 1 26 26 C 1.52997 * 117.49885 * 149.06683 * 3 2 1 27 27 H 1.08999 * 109.46631 * 295.71428 * 1 2 3 28 28 H 1.08994 * 109.46720 * 55.71488 * 1 2 3 29 29 H 1.09000 * 109.47384 * 175.71602 * 1 2 3 30 30 H 1.09003 * 109.47374 * 239.99664 * 2 1 3 31 31 H 1.09003 * 109.47158 * 120.00066 * 2 1 3 32 32 H 1.09003 * 113.46999 * 321.92957 * 7 6 4 33 33 H 1.09003 * 113.47090 * 92.37575 * 7 6 4 34 34 H 0.96703 * 113.99952 * 86.31055 * 9 8 7 35 35 H 1.08992 * 109.47621 * 38.75768 * 10 8 7 36 36 H 1.09001 * 109.46662 * 158.75765 * 10 8 7 37 37 H 0.96998 * 119.99839 * 0.02562 * 11 10 8 38 38 H 1.09001 * 109.47158 * 299.99673 * 14 12 11 39 39 H 1.09000 * 109.47069 * 59.99406 * 14 12 11 40 40 H 0.97005 * 119.99935 * 179.97438 * 19 18 16 41 41 H 1.08999 * 113.47220 * 267.62813 * 24 6 4 42 42 H 1.09000 * 113.46793 * 38.07075 * 24 6 4 43 43 H 1.08998 * 117.49786 * 214.97459 * 25 3 2 44 44 H 1.09006 * 117.49788 * 359.97438 * 25 3 2 45 45 H 1.09004 * 117.49940 * 359.97414 * 26 3 2 46 46 H 1.08999 * 117.50083 * 144.99994 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.7204 2.2449 -1.2348 5 8 0.7879 3.0204 -1.2296 6 7 2.4741 2.1048 -2.3434 7 6 3.6985 1.3754 -2.7062 8 6 3.9625 2.4494 -3.7668 9 8 4.6927 3.5799 -3.2864 10 6 4.4933 1.9065 -5.0951 11 7 5.9355 1.6734 -4.9860 12 6 6.6223 1.1929 -6.0415 13 8 6.0463 0.9532 -7.0814 14 6 8.1057 0.9526 -5.9290 15 16 8.7337 0.3104 -7.5004 16 6 10.4389 0.1267 -7.0963 17 1 10.7916 0.3906 -6.1103 18 6 11.3288 -0.3571 -8.0452 19 7 10.8989 -0.6782 -9.2472 20 14 13.1367 -0.5512 -7.6170 21 1 13.3717 -1.9100 -7.0659 22 1 13.9579 -0.3642 -8.8402 23 1 13.5176 0.4663 -6.6047 24 6 2.4376 2.6192 -3.7207 25 6 2.0633 2.1840 1.3381 26 6 3.3731 1.7204 0.6976 27 1 -0.3632 0.4459 0.9259 28 1 -0.3632 0.5789 -0.8491 29 1 -0.3634 -1.0248 -0.0768 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 4.4452 1.3586 -1.9123 33 1 3.5071 0.3880 -3.1266 34 1 5.6530 3.4698 -3.3169 35 1 3.9905 0.9687 -5.3313 36 1 4.3012 2.6310 -5.8865 37 1 6.3961 1.8648 -4.1541 38 1 8.6088 1.8902 -5.6922 39 1 8.2974 0.2276 -5.1379 40 1 11.5209 -1.0160 -9.9106 41 1 1.9070 1.9666 -4.4139 42 1 2.1144 3.6581 -3.7876 43 1 1.8473 3.2523 1.3252 44 1 1.7147 1.6444 2.2187 45 1 3.8865 0.8756 1.1570 46 1 4.0189 2.4836 0.2635 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041569749.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:24:12 Heat of formation + Delta-G solvation = -85.547089 kcal Electronic energy + Delta-G solvation = -27136.351255 eV Core-core repulsion = 23153.454600 eV Total energy + Delta-G solvation = -3982.896655 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.09498 -40.70192 -39.91342 -37.84527 -36.62736 -35.32022 -34.55080 -32.87987 -31.85416 -30.39604 -27.76146 -27.34676 -27.13455 -25.19454 -23.58784 -23.08214 -21.85552 -21.51007 -20.00883 -19.63492 -18.44185 -17.82216 -17.67660 -17.42977 -16.85056 -16.82574 -16.64645 -16.46565 -15.95284 -15.69786 -15.39997 -15.30038 -14.82863 -14.63595 -14.49406 -14.30343 -14.21827 -13.91705 -13.89680 -13.44650 -13.20452 -13.13140 -12.96369 -12.86742 -12.68205 -12.59685 -12.46996 -12.17984 -12.05263 -11.69592 -11.41720 -11.28183 -11.11505 -11.01028 -10.95558 -10.71301 -10.22597 -10.18107 -9.88220 -8.62465 -8.32011 -6.09032 1.29143 1.44532 1.44778 1.49073 1.57804 1.63542 1.65163 2.18792 2.30672 2.64914 2.71843 3.02550 3.07957 3.30456 3.36075 3.55006 3.61227 3.83950 3.86559 3.96056 4.04682 4.24961 4.36052 4.36881 4.44066 4.44840 4.49059 4.55808 4.58196 4.62337 4.66853 4.68496 4.75408 4.82016 4.93137 4.99688 5.02647 5.13151 5.15619 5.31148 5.32685 5.45443 6.22776 6.41373 6.57080 6.59184 7.00546 7.10042 7.23870 8.76839 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.020533 B = 0.001911 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.359683 B =14649.566234 C =15139.100183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.072 4.072 3 C -0.162 4.162 4 C 0.576 3.424 5 O -0.587 6.587 6 N -0.638 5.638 7 C 0.082 3.918 8 C 0.101 3.899 9 O -0.540 6.540 10 C 0.114 3.886 11 N -0.711 5.711 12 C 0.539 3.461 13 O -0.561 6.561 14 C -0.130 4.130 15 S -0.155 6.155 16 C -0.543 4.543 17 H 0.085 0.915 18 C 0.012 3.988 19 N -0.912 5.912 20 Si 0.996 3.004 21 H -0.268 1.268 22 H -0.281 1.281 23 H -0.257 1.257 24 C 0.107 3.893 25 C -0.152 4.152 26 C -0.142 4.142 27 H 0.056 0.944 28 H 0.028 0.972 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.119 0.881 34 H 0.396 0.604 35 H 0.092 0.908 36 H 0.072 0.928 37 H 0.416 0.584 38 H 0.112 0.888 39 H 0.115 0.885 40 H 0.270 0.730 41 H 0.125 0.875 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.123 0.877 45 H 0.131 0.869 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.826 2.409 23.331 27.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.109 4.109 3 C -0.165 4.165 4 C 0.367 3.633 5 O -0.467 6.467 6 N -0.371 5.371 7 C -0.040 4.040 8 C 0.058 3.942 9 O -0.348 6.348 10 C -0.011 4.011 11 N -0.367 5.367 12 C 0.325 3.675 13 O -0.439 6.439 14 C -0.281 4.281 15 S 0.072 5.928 16 C -0.691 4.691 17 H 0.103 0.897 18 C -0.193 4.193 19 N -0.548 5.548 20 Si 0.818 3.182 21 H -0.193 1.193 22 H -0.207 1.207 23 H -0.181 1.181 24 C -0.016 4.016 25 C -0.189 4.189 26 C -0.179 4.179 27 H 0.075 0.925 28 H 0.047 0.953 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.117 0.883 32 H 0.124 0.876 33 H 0.137 0.863 34 H 0.247 0.753 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.253 0.747 38 H 0.130 0.870 39 H 0.133 0.867 40 H 0.079 0.921 41 H 0.143 0.857 42 H 0.091 0.909 43 H 0.098 0.902 44 H 0.142 0.858 45 H 0.149 0.851 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -16.985 2.638 21.750 27.722 hybrid contribution 2.059 0.319 0.945 2.287 sum -14.927 2.958 22.695 27.324 Atomic orbital electron populations 1.21726 0.95853 1.01925 1.01300 1.21020 0.95628 0.90147 1.04134 1.21442 1.05911 0.97948 0.91232 1.19633 0.79720 0.80982 0.82938 1.90680 1.32111 1.39837 1.84081 1.49356 1.28703 1.49136 1.09924 1.23947 0.85609 0.97005 0.97478 1.22339 0.92638 0.87430 0.91767 1.86584 1.23968 1.38054 1.86220 1.21738 0.80700 1.02222 0.96433 1.45515 1.08677 1.67264 1.15237 1.19989 0.88369 0.75871 0.83223 1.90724 1.70996 1.51660 1.30492 1.23377 0.94775 1.06182 1.03803 1.85625 1.07643 1.84330 1.15155 1.23203 0.93337 1.50400 1.02140 0.89704 1.26108 1.04782 0.94164 0.94225 1.70184 1.37340 1.42240 1.05053 0.84983 0.76046 0.79141 0.78000 1.19344 1.20683 1.18107 1.23235 0.93343 1.01878 0.83157 1.23061 1.01150 1.00212 0.94503 1.23224 0.89324 1.04133 1.01210 0.92474 0.95321 0.90954 0.90768 0.88324 0.87592 0.86346 0.75252 0.88956 0.90934 0.74657 0.86984 0.86671 0.92112 0.85732 0.90901 0.90217 0.85848 0.85110 0.88820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.84 71.98 0.71 -1.35 16 2 C -0.07 -0.77 5.81 30.60 0.18 -0.60 16 3 C -0.16 -2.37 1.70 -52.93 -0.09 -2.46 16 4 C 0.58 12.72 6.55 87.65 0.57 13.29 16 5 O -0.59 -18.52 17.78 -3.04 -0.05 -18.58 16 6 N -0.64 -10.89 3.69 -859.24 -3.17 -14.07 16 7 C 0.08 0.80 7.84 83.09 0.65 1.45 16 8 C 0.10 1.23 1.65 -10.54 -0.02 1.22 16 9 O -0.54 -7.50 13.55 -148.98 -2.02 -9.52 16 10 C 0.11 1.73 5.36 86.38 0.46 2.19 16 11 N -0.71 -12.17 5.32 -463.08 -2.46 -14.64 16 12 C 0.54 16.45 7.85 87.66 0.69 17.14 16 13 O -0.56 -22.97 15.86 -3.02 -0.05 -23.02 16 14 C -0.13 -4.44 6.16 71.24 0.44 -4.00 16 15 S -0.15 -8.06 20.57 -56.49 -1.16 -9.22 16 16 C -0.54 -29.45 9.50 67.95 0.65 -28.80 16 17 H 0.08 4.22 7.80 -2.91 -0.02 4.20 16 18 C 0.01 0.65 5.49 84.86 0.47 1.12 16 19 N -0.91 -54.50 13.22 21.65 0.29 -54.22 16 20 Si 1.00 42.00 29.55 68.60 2.03 44.02 16 21 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 22 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 23 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 24 C 0.11 1.67 8.05 83.18 0.67 2.34 16 25 C -0.15 -2.02 9.88 30.59 0.30 -1.71 16 26 C -0.14 -1.40 9.68 30.59 0.30 -1.11 16 27 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.03 0.54 7.58 -2.39 -0.02 0.52 16 29 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.10 0.63 8.09 -2.39 -0.02 0.61 16 32 H 0.11 0.70 7.90 -2.39 -0.02 0.69 16 33 H 0.12 0.79 8.00 -2.39 -0.02 0.77 16 34 H 0.40 2.69 7.50 -74.06 -0.56 2.14 16 35 H 0.09 1.38 8.00 -2.39 -0.02 1.36 16 36 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.42 3.84 7.24 -92.71 -0.67 3.16 16 38 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 39 H 0.12 3.39 8.14 -2.40 -0.02 3.37 16 40 H 0.27 15.04 8.31 -92.70 -0.77 14.27 16 41 H 0.12 1.43 8.10 -2.39 -0.02 1.42 16 42 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.12 1.12 8.14 -2.38 -0.02 1.10 16 45 H 0.13 0.65 8.14 -2.38 -0.02 0.63 16 46 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -85.27 404.32 -0.86 -86.13 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -0.23 Total: 14.38 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: 5.97 Total: -1.27 kcal Atomic # 7 Polarization: -77.57 SS G_CDS: -5.35 Total: -82.92 kcal Atomic # 8 Polarization: -49.00 SS G_CDS: -2.12 Total: -51.12 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.02 kcal Atomic # 16 Polarization: -8.06 SS G_CDS: -1.16 Total: -9.22 kcal Total: -85.27 -0.86 -86.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041569749.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.579 kcal (2) G-P(sol) polarization free energy of solvation -85.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds