Wall clock time and date at job start Wed Apr 1 2020 01:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50696 * 120.00129 * 2 1 4 4 C 1.52998 * 109.47197 * 0.02562 * 3 2 1 5 5 C 1.52997 * 109.47505 * 240.00079 * 3 2 1 6 6 C 1.50706 * 109.47259 * 120.00083 * 3 2 1 7 7 O 1.21283 * 119.99503 * 0.02562 * 6 3 2 8 8 N 1.34773 * 120.00081 * 179.72770 * 6 3 2 9 9 C 1.46506 * 119.99968 * 180.02562 * 8 6 3 10 10 C 1.52992 * 109.47161 * 179.97438 * 9 8 6 11 11 O 1.42896 * 112.94700 * 53.40156 * 10 9 8 12 12 C 1.53953 * 113.74029 * 281.67261 * 10 9 8 13 13 N 1.47586 * 86.11747 * 222.04969 * 12 10 9 14 14 C 1.34767 * 134.49292 * 204.64188 * 13 12 10 15 15 O 1.21285 * 120.00346 * 179.97438 * 14 13 12 16 16 C 1.50703 * 119.99971 * 359.97438 * 14 13 12 17 17 S 1.81004 * 109.47197 * 180.02562 * 16 14 13 18 18 C 1.76195 * 100.00163 * 180.02562 * 17 16 14 19 19 H 1.08007 * 120.00006 * 359.97438 * 18 17 16 20 20 C 1.38800 * 120.00103 * 180.02562 * 18 17 16 21 21 N 1.31620 * 120.00185 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99808 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47330 * 89.99778 * 22 20 18 24 24 H 1.48502 * 109.46829 * 209.99900 * 22 20 18 25 25 H 1.48506 * 109.47375 * 329.99539 * 22 20 18 26 26 C 1.47581 * 91.01184 * 24.63671 * 13 12 10 27 27 H 1.08002 * 120.00206 * 179.97438 * 1 2 3 28 28 H 1.08004 * 120.00280 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.00055 * 180.02562 * 2 1 3 30 30 H 1.09005 * 109.47120 * 180.02562 * 4 3 2 31 31 H 1.09002 * 109.46792 * 299.99836 * 4 3 2 32 32 H 1.09002 * 109.47539 * 59.99761 * 4 3 2 33 33 H 1.08996 * 109.47350 * 300.00351 * 5 3 2 34 34 H 1.09002 * 109.46917 * 59.99898 * 5 3 2 35 35 H 1.08995 * 109.47505 * 180.02562 * 5 3 2 36 36 H 0.96998 * 120.00525 * 359.97438 * 8 6 3 37 37 H 1.09004 * 109.46587 * 299.99661 * 9 8 6 38 38 H 1.08998 * 109.47213 * 59.99069 * 9 8 6 39 39 H 0.96696 * 114.00243 * 309.66717 * 11 10 9 40 40 H 1.09002 * 113.76513 * 336.34862 * 12 10 9 41 41 H 1.08997 * 113.76920 * 107.74723 * 12 10 9 42 42 H 1.08994 * 109.47293 * 300.00065 * 16 14 13 43 43 H 1.09002 * 109.47330 * 60.00197 * 16 14 13 44 44 H 0.96996 * 120.00847 * 180.02562 * 21 20 18 45 45 H 1.08999 * 113.77105 * 221.05712 * 26 13 12 46 46 H 1.09007 * 113.86873 * 89.67743 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 1.0693 2.4680 0.0006 5 6 2.9431 1.3862 -1.2492 6 6 2.9299 1.3849 1.2305 7 8 2.9353 0.4716 2.0285 8 7 3.7033 2.4684 1.4410 9 6 4.5460 2.5457 2.6369 10 6 5.3165 3.8675 2.6332 11 8 4.4678 5.0067 2.4790 12 6 6.5380 3.8702 1.6961 13 7 7.2453 4.5729 2.7843 14 6 8.3043 5.4046 2.8399 15 8 8.6754 5.8434 3.9079 16 6 9.0274 5.7893 1.5749 17 16 10.3930 6.9073 1.9768 18 6 11.0437 7.1879 0.3636 19 1 10.5877 6.7132 -0.4927 20 6 12.1429 8.0181 0.1934 21 7 12.6989 8.5962 1.2369 22 14 12.8322 8.3161 -1.5170 23 1 12.1611 9.4941 -2.1229 24 1 14.2922 8.5713 -1.4247 25 1 12.5914 7.1197 -2.3632 26 6 6.3270 3.9990 3.7871 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5401 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.6144 3.4120 0.0002 31 1 0.4423 2.4104 -0.8892 32 1 0.4429 2.4101 0.8908 33 1 3.6514 0.5577 -1.2493 34 1 2.3164 1.3285 -2.1392 35 1 3.4884 2.3299 -1.2490 36 1 3.7025 3.1967 0.8004 37 1 3.9191 2.4927 3.5271 38 1 5.2510 1.7145 2.6390 39 1 3.8515 4.9404 1.7369 40 1 6.9325 2.8761 1.4858 41 1 6.4019 4.4739 0.7989 42 1 9.4210 4.8936 1.0946 43 1 8.3348 6.2899 0.8983 44 1 13.4669 9.1767 1.1180 45 1 6.0226 4.7055 4.5592 46 1 6.6582 3.0428 4.1922 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044478387.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:40 Heat of formation + Delta-G solvation = -60.710614 kcal Electronic energy + Delta-G solvation = -27155.478268 eV Core-core repulsion = 23173.658603 eV Total energy + Delta-G solvation = -3981.819665 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.13826 -40.29961 -38.12191 -36.81256 -35.65033 -34.80069 -32.45286 -31.55981 -30.58366 -28.77953 -27.99319 -26.59862 -26.10800 -25.41796 -24.26338 -21.43698 -21.12586 -19.54378 -19.15406 -17.90325 -17.70566 -16.97800 -16.87210 -16.32055 -16.01024 -15.81548 -15.47084 -15.20879 -14.82723 -14.71763 -14.54607 -14.27716 -13.98437 -13.78192 -13.49418 -13.20735 -12.99370 -12.93516 -12.70899 -12.60496 -12.56922 -12.37489 -12.22278 -11.91391 -11.76969 -11.34246 -11.21578 -11.08338 -11.04060 -10.78781 -10.57508 -10.27771 -9.84792 -9.81172 -9.64525 -9.39467 -9.08927 -8.68426 -8.26240 -6.52795 -6.23590 -3.94648 1.76916 2.17552 2.60095 2.68045 3.01904 3.20308 3.20993 3.27822 3.38788 3.52969 3.79735 4.00240 4.14300 4.17791 4.20232 4.35487 4.46909 4.53174 4.84587 4.89936 4.94660 5.08296 5.10016 5.11255 5.12089 5.15890 5.17953 5.19577 5.27386 5.42656 5.43954 5.47876 5.55089 5.57273 5.62347 5.79054 5.85862 5.94674 6.10039 6.16073 6.28366 6.87723 7.07401 7.57031 7.70843 7.73274 8.32810 8.50094 9.21359 10.83855 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.017113 B = 0.002053 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.776945 B =13636.416384 C =14786.280682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.126 4.126 3 C -0.055 4.055 4 C -0.145 4.145 5 C -0.139 4.139 6 C 0.529 3.471 7 O -0.529 6.529 8 N -0.731 5.731 9 C 0.103 3.897 10 C 0.083 3.917 11 O -0.521 6.521 12 C 0.079 3.921 13 N -0.643 5.643 14 C 0.559 3.441 15 O -0.512 6.512 16 C -0.144 4.144 17 S -0.059 6.059 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.127 3.873 27 H 0.100 0.900 28 H 0.103 0.897 29 H 0.114 0.886 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.398 0.602 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.375 0.625 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.269 0.731 45 H 0.094 0.906 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.782 -16.233 -5.359 30.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.145 4.145 3 C -0.059 4.059 4 C -0.203 4.203 5 C -0.196 4.196 6 C 0.315 3.685 7 O -0.404 6.404 8 N -0.385 5.385 9 C -0.022 4.022 10 C 0.040 3.960 11 O -0.326 6.326 12 C -0.045 4.045 13 N -0.382 5.382 14 C 0.349 3.651 15 O -0.385 6.385 16 C -0.295 4.295 17 S 0.167 5.833 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.746 3.254 23 H -0.202 1.202 24 H -0.207 1.207 25 H -0.197 1.197 26 C 0.003 3.997 27 H 0.119 0.881 28 H 0.121 0.879 29 H 0.132 0.868 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.233 0.767 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.223 0.777 40 H 0.112 0.888 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.079 0.921 45 H 0.112 0.888 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -24.524 -15.748 -2.562 29.257 hybrid contribution -0.223 -0.223 -3.165 3.181 sum -24.747 -15.971 -5.727 30.005 Atomic orbital electron populations 1.23992 0.95867 1.02371 1.00581 1.22480 0.95644 0.96526 0.99822 1.19920 0.95710 0.96244 0.93978 1.21978 0.98844 0.96097 1.03355 1.21839 0.99309 1.02743 0.95728 1.20459 0.79455 0.81523 0.87067 1.90729 1.65554 1.37422 1.46714 1.45911 1.45341 1.21772 1.25432 1.21936 0.94469 0.96977 0.88803 1.23096 0.89235 0.85218 0.98453 1.86688 1.52324 1.39264 1.54307 1.23894 0.89303 0.97958 0.93371 1.49741 1.31493 1.47307 1.09680 1.20008 0.77212 0.76773 0.91114 1.90723 1.63704 1.52923 1.31180 1.23464 1.03422 1.05151 0.97415 1.85430 1.29317 1.55917 1.12593 1.22847 1.18148 1.34406 0.92990 0.90956 1.24996 0.95674 0.94848 0.98071 1.70010 1.21771 1.28986 1.29424 0.86160 0.78154 0.78682 0.82444 1.20244 1.20721 1.19714 1.23061 0.84049 0.99610 0.92953 0.88142 0.87856 0.86777 0.91776 0.90753 0.91547 0.91648 0.90943 0.91704 0.76741 0.89767 0.89483 0.77742 0.88767 0.89312 0.89399 0.89355 0.92138 0.88752 0.88207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.07 13.70 29.02 0.40 -0.68 16 2 C -0.13 -0.84 8.00 -36.03 -0.29 -1.12 16 3 C -0.06 -0.30 0.84 -156.81 -0.13 -0.43 16 4 C -0.15 -0.53 7.02 37.16 0.26 -0.27 16 5 C -0.14 -0.55 8.35 37.16 0.31 -0.24 16 6 C 0.53 4.08 6.47 -10.98 -0.07 4.01 16 7 O -0.53 -6.35 16.03 5.56 0.09 -6.26 16 8 N -0.73 -3.88 5.12 -60.29 -0.31 -4.19 16 9 C 0.10 0.67 5.28 -4.04 -0.02 0.65 16 10 C 0.08 0.65 1.52 -89.70 -0.14 0.51 16 11 O -0.52 -4.45 13.51 -35.23 -0.48 -4.93 16 12 C 0.08 0.71 8.01 -2.97 -0.02 0.69 16 13 N -0.64 -9.11 3.61 -178.21 -0.64 -9.76 16 14 C 0.56 11.03 8.07 -10.99 -0.09 10.94 16 15 O -0.51 -12.23 16.59 5.55 0.09 -12.14 16 16 C -0.14 -2.98 5.91 36.01 0.21 -2.77 16 17 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 18 C -0.54 -15.26 9.50 30.94 0.29 -14.97 16 19 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 20 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.15 13.22 55.49 0.73 -25.41 16 22 Si 0.92 21.29 29.55 -169.99 -5.02 16.27 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 C 0.13 1.37 8.24 -2.98 -0.02 1.35 16 27 H 0.10 0.49 8.06 -52.49 -0.42 0.07 16 28 H 0.10 0.46 5.69 -52.48 -0.30 0.17 16 29 H 0.11 0.83 8.06 -52.49 -0.42 0.41 16 30 H 0.06 0.14 7.58 -51.93 -0.39 -0.26 16 31 H 0.07 0.21 7.50 -51.93 -0.39 -0.18 16 32 H 0.07 0.30 7.50 -51.93 -0.39 -0.09 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.06 0.17 7.55 -51.93 -0.39 -0.22 16 36 H 0.40 1.10 6.14 -40.82 -0.25 0.85 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 0.58 8.04 -51.93 -0.42 0.17 16 39 H 0.37 1.57 7.61 45.56 0.35 1.91 16 40 H 0.09 0.69 8.03 -51.93 -0.42 0.27 16 41 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 43 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 44 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 45 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.10 0.85 8.10 -51.93 -0.42 0.43 16 LS Contribution 398.89 15.07 6.01 6.01 Total: -1.00 -38.96 398.89 -7.51 -46.47 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -6.37 Total: -1.89 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: 0.59 Total: -0.34 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: -0.22 Total: -39.36 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.29 Total: -23.33 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -38.96 -7.51 -46.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044478387.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.236 kcal (2) G-P(sol) polarization free energy of solvation -38.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds