Wall clock time and date at job start Wed Apr 1 2020 01:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50696 * 120.00129 * 2 1 4 4 C 1.52998 * 109.47197 * 0.02562 * 3 2 1 5 5 C 1.52997 * 109.47505 * 240.00079 * 3 2 1 6 6 C 1.50706 * 109.47259 * 120.00083 * 3 2 1 7 7 O 1.21283 * 119.99503 * 0.02562 * 6 3 2 8 8 N 1.34773 * 120.00081 * 179.72770 * 6 3 2 9 9 C 1.46506 * 119.99968 * 180.02562 * 8 6 3 10 10 C 1.52992 * 109.47161 * 179.97438 * 9 8 6 11 11 O 1.42896 * 112.94700 * 53.40156 * 10 9 8 12 12 C 1.53953 * 113.74029 * 281.67261 * 10 9 8 13 13 N 1.47586 * 86.11747 * 222.04969 * 12 10 9 14 14 C 1.34767 * 134.49292 * 204.64188 * 13 12 10 15 15 O 1.21285 * 120.00346 * 179.97438 * 14 13 12 16 16 C 1.50703 * 119.99971 * 359.97438 * 14 13 12 17 17 S 1.81004 * 109.47197 * 180.02562 * 16 14 13 18 18 C 1.76195 * 100.00163 * 180.02562 * 17 16 14 19 19 H 1.08007 * 120.00006 * 359.97438 * 18 17 16 20 20 C 1.38800 * 120.00103 * 180.02562 * 18 17 16 21 21 N 1.31620 * 120.00185 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99808 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47330 * 89.99778 * 22 20 18 24 24 H 1.48502 * 109.46829 * 209.99900 * 22 20 18 25 25 H 1.48506 * 109.47375 * 329.99539 * 22 20 18 26 26 C 1.47581 * 91.01184 * 24.63671 * 13 12 10 27 27 H 1.08002 * 120.00206 * 179.97438 * 1 2 3 28 28 H 1.08004 * 120.00280 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.00055 * 180.02562 * 2 1 3 30 30 H 1.09005 * 109.47120 * 180.02562 * 4 3 2 31 31 H 1.09002 * 109.46792 * 299.99836 * 4 3 2 32 32 H 1.09002 * 109.47539 * 59.99761 * 4 3 2 33 33 H 1.08996 * 109.47350 * 300.00351 * 5 3 2 34 34 H 1.09002 * 109.46917 * 59.99898 * 5 3 2 35 35 H 1.08995 * 109.47505 * 180.02562 * 5 3 2 36 36 H 0.96998 * 120.00525 * 359.97438 * 8 6 3 37 37 H 1.09004 * 109.46587 * 299.99661 * 9 8 6 38 38 H 1.08998 * 109.47213 * 59.99069 * 9 8 6 39 39 H 0.96696 * 114.00243 * 309.66717 * 11 10 9 40 40 H 1.09002 * 113.76513 * 336.34862 * 12 10 9 41 41 H 1.08997 * 113.76920 * 107.74723 * 12 10 9 42 42 H 1.08994 * 109.47293 * 300.00065 * 16 14 13 43 43 H 1.09002 * 109.47330 * 60.00197 * 16 14 13 44 44 H 0.96996 * 120.00847 * 180.02562 * 21 20 18 45 45 H 1.08999 * 113.77105 * 221.05712 * 26 13 12 46 46 H 1.09007 * 113.86873 * 89.67743 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 1.0693 2.4680 0.0006 5 6 2.9431 1.3862 -1.2492 6 6 2.9299 1.3849 1.2305 7 8 2.9353 0.4716 2.0285 8 7 3.7033 2.4684 1.4410 9 6 4.5460 2.5457 2.6369 10 6 5.3165 3.8675 2.6332 11 8 4.4678 5.0067 2.4790 12 6 6.5380 3.8702 1.6961 13 7 7.2453 4.5729 2.7843 14 6 8.3043 5.4046 2.8399 15 8 8.6754 5.8434 3.9079 16 6 9.0274 5.7893 1.5749 17 16 10.3930 6.9073 1.9768 18 6 11.0437 7.1879 0.3636 19 1 10.5877 6.7132 -0.4927 20 6 12.1429 8.0181 0.1934 21 7 12.6989 8.5962 1.2369 22 14 12.8322 8.3161 -1.5170 23 1 12.1611 9.4941 -2.1229 24 1 14.2922 8.5713 -1.4247 25 1 12.5914 7.1197 -2.3632 26 6 6.3270 3.9990 3.7871 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5401 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.6144 3.4120 0.0002 31 1 0.4423 2.4104 -0.8892 32 1 0.4429 2.4101 0.8908 33 1 3.6514 0.5577 -1.2493 34 1 2.3164 1.3285 -2.1392 35 1 3.4884 2.3299 -1.2490 36 1 3.7025 3.1967 0.8004 37 1 3.9191 2.4927 3.5271 38 1 5.2510 1.7145 2.6390 39 1 3.8515 4.9404 1.7369 40 1 6.9325 2.8761 1.4858 41 1 6.4019 4.4739 0.7989 42 1 9.4210 4.8936 1.0946 43 1 8.3348 6.2899 0.8983 44 1 13.4669 9.1767 1.1180 45 1 6.0226 4.7055 4.5592 46 1 6.6582 3.0428 4.1922 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044478387.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:39 Heat of formation + Delta-G solvation = -91.773971 kcal Electronic energy + Delta-G solvation = -27156.825276 eV Core-core repulsion = 23173.658603 eV Total energy + Delta-G solvation = -3983.166673 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.91997 -41.05262 -39.42657 -37.31393 -36.54989 -35.41767 -34.59881 -32.25951 -31.68057 -29.84200 -28.26500 -27.74546 -27.41970 -26.86112 -24.73861 -22.08221 -21.85609 -20.59046 -19.96587 -19.52818 -18.37492 -18.14872 -17.52673 -17.18291 -16.91439 -16.88184 -16.77106 -16.45959 -15.98522 -15.74716 -15.31472 -15.14415 -14.94491 -14.89854 -14.52246 -14.23907 -14.10279 -13.62043 -13.49454 -13.31472 -13.22956 -13.15633 -13.05042 -13.02392 -12.89394 -12.64766 -12.61410 -12.17272 -12.03484 -11.74868 -11.63315 -11.39846 -11.15197 -10.90693 -10.79017 -10.30588 -10.28302 -10.18814 -9.83750 -8.70189 -8.35438 -6.14906 1.18155 1.30979 1.41956 1.42752 1.52943 1.55242 1.60771 1.90247 2.13569 2.26236 2.74928 2.98704 3.06410 3.20427 3.54285 3.56707 3.63155 3.79188 3.95304 4.03732 4.14070 4.22192 4.32960 4.40447 4.46986 4.47800 4.50170 4.61928 4.66928 4.73061 4.80521 4.82893 4.83529 4.90214 4.91348 5.11319 5.27261 5.29730 5.32494 5.40338 5.72206 5.84250 6.18636 6.41788 6.49641 6.64088 7.05211 7.05907 7.18744 8.73916 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.017113 B = 0.002053 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.776945 B =13636.416384 C =14786.280682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.147 4.147 3 C -0.051 4.051 4 C -0.145 4.145 5 C -0.137 4.137 6 C 0.528 3.472 7 O -0.578 6.578 8 N -0.715 5.715 9 C 0.113 3.887 10 C 0.111 3.889 11 O -0.540 6.540 12 C 0.077 3.923 13 N -0.644 5.644 14 C 0.554 3.446 15 O -0.570 6.570 16 C -0.116 4.116 17 S -0.154 6.154 18 C -0.545 4.545 19 H 0.084 0.916 20 C 0.012 3.988 21 N -0.912 5.912 22 Si 1.001 2.999 23 H -0.267 1.267 24 H -0.278 1.278 25 H -0.256 1.256 26 C 0.113 3.887 27 H 0.103 0.897 28 H 0.117 0.883 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.413 0.587 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.395 0.605 40 H 0.121 0.879 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.271 0.729 45 H 0.077 0.923 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.480 -16.939 -8.336 33.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.166 4.166 3 C -0.054 4.054 4 C -0.203 4.203 5 C -0.195 4.195 6 C 0.315 3.685 7 O -0.456 6.456 8 N -0.369 5.369 9 C -0.011 4.011 10 C 0.068 3.932 11 O -0.348 6.348 12 C -0.045 4.045 13 N -0.380 5.380 14 C 0.344 3.656 15 O -0.449 6.449 16 C -0.267 4.267 17 S 0.073 5.927 18 C -0.693 4.693 19 H 0.102 0.898 20 C -0.193 4.193 21 N -0.548 5.548 22 Si 0.822 3.178 23 H -0.192 1.192 24 H -0.204 1.204 25 H -0.180 1.180 26 C -0.009 4.009 27 H 0.121 0.879 28 H 0.135 0.865 29 H 0.116 0.884 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.251 0.749 37 H 0.096 0.904 38 H 0.110 0.890 39 H 0.246 0.754 40 H 0.139 0.861 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.080 0.920 45 H 0.095 0.905 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -26.294 -16.474 -5.597 31.529 hybrid contribution 0.120 -0.110 -2.193 2.199 sum -26.174 -16.584 -7.790 31.949 Atomic orbital electron populations 1.24167 0.95667 1.03206 0.99382 1.22573 0.96170 0.96818 1.00994 1.19925 0.95816 0.96270 0.93369 1.22017 0.98655 0.96104 1.03476 1.21865 0.99126 1.03291 0.95194 1.20907 0.79339 0.81087 0.87169 1.90713 1.67178 1.39266 1.48470 1.45745 1.44321 1.21679 1.25194 1.21745 0.94378 0.95915 0.89111 1.22652 0.88726 0.85686 0.96149 1.86664 1.52912 1.39578 1.55666 1.24337 0.88420 0.98866 0.92909 1.49739 1.29484 1.45629 1.13121 1.19769 0.78382 0.77739 0.89750 1.90693 1.65940 1.55673 1.32629 1.23242 1.00960 1.03999 0.98516 1.85652 1.33488 1.58925 1.14609 1.23181 1.18535 1.34669 0.92905 0.89769 1.26171 0.95907 0.94267 1.02918 1.70184 1.22438 1.29885 1.32288 0.84920 0.77188 0.79213 0.76440 1.19206 1.20373 1.18006 1.23441 0.84260 0.99993 0.93255 0.87882 0.86512 0.88358 0.89752 0.89598 0.92482 0.92753 0.90078 0.89808 0.74891 0.90367 0.89049 0.75356 0.86072 0.87647 0.87468 0.87596 0.91964 0.90488 0.85661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.89 13.70 67.78 0.93 -0.96 16 2 C -0.15 -1.83 8.00 25.65 0.21 -1.63 16 3 C -0.05 -0.44 0.84 -53.67 -0.05 -0.49 16 4 C -0.15 -0.63 7.02 71.98 0.51 -0.13 16 5 C -0.14 -0.71 8.35 71.98 0.60 -0.11 16 6 C 0.53 7.14 6.47 87.66 0.57 7.71 16 7 O -0.58 -13.45 16.03 -3.04 -0.05 -13.50 16 8 N -0.72 -5.38 5.12 -463.05 -2.37 -7.75 16 9 C 0.11 1.16 5.28 86.38 0.46 1.61 16 10 C 0.11 1.42 1.52 -10.14 -0.02 1.40 16 11 O -0.54 -7.63 13.51 -148.98 -2.01 -9.64 16 12 C 0.08 1.10 8.01 86.48 0.69 1.79 16 13 N -0.64 -17.14 3.61 -839.94 -3.03 -20.17 16 14 C 0.55 21.78 8.07 87.66 0.71 22.49 16 15 O -0.57 -28.28 16.59 -3.04 -0.05 -28.33 16 16 C -0.12 -4.73 5.91 71.24 0.42 -4.31 16 17 S -0.15 -8.69 20.57 -56.49 -1.16 -9.85 16 18 C -0.55 -31.09 9.50 67.95 0.65 -30.44 16 19 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16 20 C 0.01 0.69 5.49 84.86 0.47 1.15 16 21 N -0.91 -56.15 13.22 21.65 0.29 -55.86 16 22 Si 1.00 43.16 29.55 68.60 2.03 45.19 16 23 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 24 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 25 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 26 C 0.11 2.27 8.24 86.48 0.71 2.98 16 27 H 0.10 0.93 8.06 -2.91 -0.02 0.90 16 28 H 0.12 0.82 5.69 -2.91 -0.02 0.81 16 29 H 0.10 1.48 8.06 -2.91 -0.02 1.46 16 30 H 0.08 0.02 7.58 -2.38 -0.02 0.00 16 31 H 0.09 0.21 7.50 -2.39 -0.02 0.19 16 32 H 0.06 0.38 7.50 -2.39 -0.02 0.36 16 33 H 0.05 0.41 8.14 -2.39 -0.02 0.40 16 34 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 35 H 0.08 0.10 7.55 -2.39 -0.02 0.08 16 36 H 0.41 0.53 6.14 -92.71 -0.57 -0.04 16 37 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.09 0.95 8.04 -2.39 -0.02 0.93 16 39 H 0.40 1.75 7.61 -74.06 -0.56 1.19 16 40 H 0.12 1.21 8.03 -2.39 -0.02 1.19 16 41 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 43 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 44 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 45 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.13 1.89 8.10 -2.38 -0.02 1.87 16 Total: -1.00 -89.57 398.89 0.35 -89.21 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -0.13 Total: 9.62 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: 6.85 Total: 1.08 kcal Atomic # 7 Polarization: -78.66 SS G_CDS: -5.11 Total: -83.78 kcal Atomic # 8 Polarization: -49.36 SS G_CDS: -2.11 Total: -51.47 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 16 Polarization: -8.69 SS G_CDS: -1.16 Total: -9.85 kcal Total: -89.57 0.35 -89.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044478387.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.560 kcal (2) G-P(sol) polarization free energy of solvation -89.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds