Wall clock time and date at job start Wed Apr 1 2020 00:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 110.88639 * 2 1 4 4 C 1.34768 * 119.99731 * 62.42737 * 3 2 1 5 5 O 1.21616 * 120.00371 * 359.97438 * 4 3 2 6 6 C 1.47336 * 119.99933 * 179.97438 * 4 3 2 7 7 C 1.35396 * 118.73479 * 179.97438 * 6 4 3 8 8 C 1.46488 * 119.22416 * 180.02562 * 7 6 4 9 9 C 1.39405 * 122.09322 * 180.02562 * 8 7 6 10 10 C 1.37921 * 119.49422 * 179.97438 * 9 8 7 11 11 C 1.38763 * 120.70370 * 359.97438 * 10 9 8 12 12 C 1.37994 * 120.74449 * 0.02562 * 11 10 9 13 13 C 1.39158 * 119.53246 * 359.97438 * 12 11 10 14 14 C 1.47046 * 122.06244 * 180.02562 * 13 12 11 15 15 O 1.21627 * 120.34509 * 0.02562 * 14 13 12 16 16 O 1.34409 * 119.31557 * 179.97438 * 14 13 12 17 17 C 1.55160 * 111.03450 * 236.09754 * 2 1 3 18 18 C 1.54322 * 102.93952 * 206.40821 * 17 2 1 19 19 N 1.47024 * 107.27389 * 22.19251 * 18 17 2 20 20 C 1.36933 * 125.65137 * 181.01956 * 19 18 17 21 21 H 1.07997 * 120.00346 * 180.02562 * 20 19 18 22 22 C 1.38815 * 120.00030 * 0.04904 * 20 19 18 23 23 N 1.31616 * 119.99792 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00129 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47188 * 59.99494 * 24 22 20 26 26 H 1.48495 * 109.47155 * 179.97438 * 24 22 20 27 27 H 1.48506 * 109.46953 * 299.99620 * 24 22 20 28 28 C 1.47428 * 108.69851 * 1.06026 * 19 18 17 29 29 H 1.09004 * 109.46613 * 60.70174 * 1 2 3 30 30 H 1.08996 * 109.46848 * 180.69953 * 1 2 3 31 31 H 1.08998 * 109.47092 * 300.70176 * 1 2 3 32 32 H 0.97001 * 119.99791 * 242.42623 * 3 2 1 33 33 H 1.07996 * 120.38820 * 0.02562 * 7 6 4 34 34 H 1.08001 * 120.25312 * 359.69592 * 9 8 7 35 35 H 1.07998 * 119.64498 * 180.02562 * 10 9 8 36 36 H 1.08009 * 119.62929 * 179.97438 * 11 10 9 37 37 H 1.07995 * 120.23429 * 179.97438 * 12 11 10 38 38 H 1.08991 * 110.72270 * 324.77082 * 17 2 1 39 39 H 1.09003 * 110.72149 * 88.04931 * 17 2 1 40 40 H 1.09001 * 109.88371 * 262.77495 * 18 17 2 41 41 H 1.09001 * 109.88260 * 141.61001 * 18 17 2 42 42 H 0.97008 * 120.00029 * 180.02562 * 23 22 20 43 43 H 1.09005 * 110.36366 * 217.03163 * 28 19 18 44 44 H 1.09000 * 110.45835 * 94.76088 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3688 0.0000 4 6 1.7878 2.1909 1.0346 5 8 1.1152 1.7967 1.9680 6 6 2.3135 3.5673 1.0349 7 6 2.0317 4.3715 2.0871 8 6 2.5485 5.7421 2.0982 9 6 2.2955 6.6206 3.1507 10 6 2.8092 7.8997 3.1059 11 6 3.5738 8.3188 2.0265 12 6 3.8363 7.4655 0.9742 13 6 3.3280 6.1703 0.9983 14 6 3.5737 5.2150 -0.0923 15 8 4.2389 5.5413 -1.0568 16 8 3.0563 3.9771 -0.0118 17 6 2.0870 -0.8078 -1.2020 18 6 3.4683 -1.2732 -0.6953 19 7 3.4275 -1.2420 0.7741 20 6 4.4643 -1.5650 1.6083 21 1 4.3332 -1.5101 2.6789 22 6 5.6839 -1.9626 1.0779 23 7 5.8437 -2.0296 -0.2268 24 14 7.0984 -2.4026 2.2159 25 1 6.6987 -3.5373 3.0866 26 1 8.2813 -2.7924 1.4073 27 1 7.4394 -1.2283 3.0586 28 6 2.0853 -0.8062 1.2005 29 1 -0.3633 0.5029 -0.8963 30 1 -0.3633 -1.0276 0.0125 31 1 -0.3633 0.5247 0.8836 32 1 2.5886 1.6832 -0.7446 33 1 1.4329 4.0067 2.9085 34 1 1.6979 6.3033 3.9925 35 1 2.6150 8.5821 3.9202 36 1 3.9672 9.3246 2.0092 37 1 4.4320 7.8005 0.1380 38 1 1.4482 -1.6633 -1.4208 39 1 2.1930 -0.1698 -2.0795 40 1 4.2432 -0.5985 -1.0590 41 1 3.6665 -2.2884 -1.0391 42 1 6.6959 -2.3078 -0.5975 43 1 2.1554 -0.1714 2.0839 44 1 1.4512 -1.6692 1.4038 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046354802.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:55:48 Heat of formation + Delta-G solvation = -30.837867 kcal Electronic energy + Delta-G solvation = -29829.599272 eV Core-core repulsion = 25713.631035 eV Total energy + Delta-G solvation = -4115.968237 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.141 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.91489 -39.99600 -38.96113 -38.09406 -37.29081 -34.13556 -33.43861 -32.06362 -31.70172 -30.49532 -29.70193 -28.68039 -25.74072 -25.39064 -24.93701 -23.65821 -22.52223 -21.82949 -20.28328 -19.45957 -19.14613 -18.64617 -17.91284 -16.92653 -16.88897 -16.47420 -15.80576 -15.56915 -14.90481 -14.82541 -14.80755 -14.63457 -14.30554 -13.93889 -13.74943 -13.37483 -13.31283 -13.09068 -12.92037 -12.81653 -12.26633 -12.09336 -11.98433 -11.82920 -11.69796 -11.63811 -10.94618 -10.87342 -10.80069 -10.45130 -10.43235 -10.38568 -10.10820 -10.03517 -9.65179 -9.58442 -9.56337 -8.80585 -8.57213 -8.42959 -6.79282 -5.68691 -3.01009 0.00724 0.39286 1.49503 2.05483 2.19830 3.02890 3.17584 3.42957 3.47116 3.48293 3.52370 3.64652 4.22097 4.26088 4.45249 4.52513 4.74605 4.77547 4.80109 5.04016 5.22375 5.25957 5.33269 5.42328 5.46741 5.51482 5.59588 5.71178 5.84908 5.91414 5.93094 5.95141 6.08550 6.10785 6.28741 6.32771 6.36924 6.47383 6.61055 6.73966 6.90784 7.00499 7.17793 7.55316 7.58266 7.69521 7.82771 8.22583 8.28123 9.25034 9.85161 10.50673 11.43192 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.011432 B = 0.003380 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.582991 B = 8282.514514 C = 9235.327186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.151 3.849 3 N -0.679 5.679 4 C 0.576 3.424 5 O -0.514 6.514 6 C 0.067 3.933 7 C -0.137 4.137 8 C -0.007 4.007 9 C -0.110 4.110 10 C -0.080 4.080 11 C -0.130 4.130 12 C -0.044 4.044 13 C -0.174 4.174 14 C 0.526 3.474 15 O -0.448 6.448 16 O -0.267 6.267 17 C -0.146 4.146 18 C 0.176 3.824 19 N -0.603 5.603 20 C -0.225 4.225 21 H 0.076 0.924 22 C -0.008 4.008 23 N -0.923 5.923 24 Si 0.911 3.089 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.286 1.286 28 C 0.131 3.869 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.408 0.592 33 H 0.172 0.828 34 H 0.141 0.859 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.142 0.858 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.047 0.953 41 H 0.045 0.955 42 H 0.252 0.748 43 H 0.055 0.945 44 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.573 19.174 2.663 22.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.065 3.935 3 N -0.327 5.327 4 C 0.360 3.640 5 O -0.392 6.392 6 C 0.019 3.981 7 C -0.157 4.157 8 C -0.008 4.008 9 C -0.128 4.128 10 C -0.098 4.098 11 C -0.148 4.148 12 C -0.062 4.062 13 C -0.176 4.176 14 C 0.372 3.628 15 O -0.333 6.333 16 O -0.178 6.178 17 C -0.185 4.185 18 C 0.051 3.949 19 N -0.329 5.329 20 C -0.354 4.354 21 H 0.094 0.906 22 C -0.204 4.204 23 N -0.571 5.571 24 Si 0.741 3.259 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.213 1.213 28 C 0.005 3.995 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.243 0.757 33 H 0.189 0.811 34 H 0.159 0.841 35 H 0.152 0.848 36 H 0.153 0.847 37 H 0.160 0.840 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.074 0.926 44 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -10.445 18.777 2.634 21.647 hybrid contribution 1.228 0.029 0.292 1.263 sum -9.216 18.806 2.926 21.147 Atomic orbital electron populations 1.21998 0.93938 1.02517 1.02358 1.21658 0.92792 0.80054 0.98977 1.45789 1.52423 1.12722 1.21795 1.17249 0.80850 0.82463 0.83457 1.90829 1.39391 1.74081 1.34913 1.21672 0.94327 0.94918 0.87164 1.22319 1.02521 0.91680 0.99224 1.19045 0.94773 0.93258 0.93681 1.21213 1.00492 0.93207 0.97880 1.21428 0.94869 0.95706 0.97814 1.21301 0.99380 1.00296 0.93791 1.21119 0.95729 0.90884 0.98450 1.20255 1.04732 0.96389 0.96217 1.20350 0.77489 0.78738 0.86242 1.90941 1.35257 1.73540 1.33605 1.83371 1.57783 1.34118 1.42557 1.23246 1.00563 0.98902 0.95787 1.21179 0.89994 1.00043 0.83663 1.44431 1.07713 1.78944 1.01813 1.18999 0.89405 1.38016 0.88942 0.90611 1.24768 0.97727 1.01893 0.96003 1.69933 1.24225 1.53701 1.09195 0.86216 0.81907 0.78252 0.79500 1.21175 1.21603 1.21281 1.21892 0.87752 0.94959 0.94943 0.92902 0.91447 0.91008 0.75677 0.81087 0.84130 0.84778 0.84725 0.83988 0.90576 0.91547 0.93516 0.93679 0.93759 0.92649 0.95379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 8.62 37.16 0.32 -1.84 16 2 C 0.15 2.63 0.82 -129.67 -0.11 2.53 16 3 N -0.68 -11.39 5.16 -46.71 -0.24 -11.63 16 4 C 0.58 9.51 7.15 -12.56 -0.09 9.42 16 5 O -0.51 -9.18 12.92 5.26 0.07 -9.11 16 6 C 0.07 0.97 6.86 -36.90 -0.25 0.72 16 7 C -0.14 -1.66 9.52 -37.27 -0.35 -2.02 16 8 C -0.01 -0.08 5.89 -104.92 -0.62 -0.70 16 9 C -0.11 -0.88 9.88 -39.26 -0.39 -1.27 16 10 C -0.08 -0.53 10.01 -39.50 -0.40 -0.92 16 11 C -0.13 -0.92 10.01 -39.48 -0.40 -1.32 16 12 C -0.04 -0.42 9.66 -39.33 -0.38 -0.80 16 13 C -0.17 -2.11 5.90 -104.76 -0.62 -2.73 16 14 C 0.53 7.83 8.19 34.30 0.28 8.11 16 15 O -0.45 -7.58 17.39 -19.37 -0.34 -7.92 16 16 O -0.27 -4.09 8.98 -20.38 -0.18 -4.27 16 17 C -0.15 -2.59 5.99 -24.90 -0.15 -2.74 16 18 C 0.18 4.18 5.36 -3.06 -0.02 4.16 16 19 N -0.60 -15.43 3.39 -170.07 -0.58 -16.01 16 20 C -0.23 -6.39 10.28 -15.06 -0.15 -6.55 16 21 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 22 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 23 N -0.92 -27.21 10.31 55.49 0.57 -26.64 16 24 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 C 0.13 2.82 6.11 -2.53 -0.02 2.80 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.90 8.13 -51.93 -0.42 0.48 16 31 H 0.07 1.09 6.45 -51.93 -0.33 0.76 16 32 H 0.41 6.56 7.82 -40.82 -0.32 6.24 16 33 H 0.17 1.85 7.47 -52.49 -0.39 1.46 16 34 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 36 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 37 H 0.14 1.26 7.80 -52.49 -0.41 0.85 16 38 H 0.08 1.23 8.04 -51.93 -0.42 0.82 16 39 H 0.07 1.03 8.05 -51.93 -0.42 0.61 16 40 H 0.05 1.23 7.38 -51.93 -0.38 0.85 16 41 H 0.05 1.19 7.51 -51.93 -0.39 0.80 16 42 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 43 H 0.06 1.26 6.31 -51.93 -0.33 0.94 16 44 H 0.03 0.60 8.03 -51.93 -0.42 0.18 16 LS Contribution 366.22 15.07 5.52 5.52 Total: -1.00 -33.40 366.22 -9.10 -42.50 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -5.47 Total: 3.47 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: -3.43 Total: 6.54 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: -0.25 Total: -54.28 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.45 Total: -21.30 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.40 -9.10 -42.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046354802.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.658 kcal (2) G-P(sol) polarization free energy of solvation -33.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds