Wall clock time and date at job start Wed Apr 1 2020 00:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46497 * 110.89183 * 2 1 4 4 C 1.34782 * 119.99822 * 297.57543 * 3 2 1 5 5 O 1.21618 * 119.99762 * 0.02562 * 4 3 2 6 6 C 1.47328 * 120.00066 * 179.97438 * 4 3 2 7 7 C 1.35394 * 118.73514 * 179.97438 * 6 4 3 8 8 C 1.46496 * 119.22502 * 180.02562 * 7 6 4 9 9 C 1.39397 * 122.08696 * 180.02562 * 8 7 6 10 10 C 1.37923 * 119.48920 * 179.97438 * 9 8 7 11 11 C 1.38764 * 120.70824 * 0.02859 * 10 9 8 12 12 C 1.38003 * 120.73962 * 359.95075 * 11 10 9 13 13 C 1.39151 * 119.53390 * 0.04309 * 12 11 10 14 14 C 1.47051 * 122.06921 * 179.97438 * 13 12 11 15 15 O 1.21626 * 120.33980 * 359.97438 * 14 13 12 16 16 O 1.34400 * 119.31518 * 179.71724 * 14 13 12 17 17 C 1.55157 * 111.00515 * 123.92556 * 2 1 3 18 18 C 1.54334 * 103.02095 * 153.37497 * 17 2 1 19 19 N 1.47014 * 107.26782 * 338.14225 * 18 17 2 20 20 C 1.36945 * 125.64902 * 178.84833 * 19 18 17 21 21 H 1.07997 * 119.99756 * 179.68982 * 20 19 18 22 22 C 1.38805 * 119.99878 * 359.68887 * 20 19 18 23 23 N 1.31624 * 120.00257 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99929 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47187 * 179.97438 * 24 22 20 26 26 H 1.48494 * 109.47141 * 300.00154 * 24 22 20 27 27 H 1.48498 * 109.47018 * 60.00200 * 24 22 20 28 28 C 1.47428 * 108.70537 * 358.58102 * 19 18 17 29 29 H 1.09002 * 109.47666 * 182.43089 * 1 2 3 30 30 H 1.09008 * 109.47143 * 302.42655 * 1 2 3 31 31 H 1.08999 * 109.47170 * 62.42125 * 1 2 3 32 32 H 0.96991 * 120.00253 * 117.57206 * 3 2 1 33 33 H 1.07996 * 120.39093 * 359.97438 * 7 6 4 34 34 H 1.08000 * 120.25930 * 359.96502 * 9 8 7 35 35 H 1.07998 * 119.64399 * 180.02562 * 10 9 8 36 36 H 1.07999 * 119.63212 * 179.97438 * 11 10 9 37 37 H 1.07997 * 120.22732 * 180.02562 * 12 11 10 38 38 H 1.08998 * 110.71770 * 271.93665 * 17 2 1 39 39 H 1.09002 * 110.71853 * 35.03099 * 17 2 1 40 40 H 1.08998 * 109.99457 * 218.65928 * 18 17 2 41 41 H 1.09007 * 109.77698 * 97.49747 * 18 17 2 42 42 H 0.97001 * 119.99885 * 179.97438 * 23 22 20 43 43 H 1.09003 * 110.36579 * 143.19056 * 28 19 18 44 44 H 1.08993 * 110.36917 * 265.41008 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.7878 2.1909 -1.0347 5 8 1.1151 1.7967 -1.9680 6 6 2.3127 3.5675 -1.0345 7 6 2.0318 4.3714 -2.0871 8 6 2.5488 5.7421 -2.0982 9 6 2.2957 6.6204 -3.1507 10 6 2.8087 7.8999 -3.1056 11 6 3.5725 8.3194 -2.0257 12 6 3.8346 7.4661 -0.9732 13 6 3.3271 6.1707 -0.9976 14 6 3.5723 5.2154 0.0931 15 8 4.2366 5.5421 1.0581 16 8 3.0503 3.9794 0.0151 17 6 2.0861 -0.8084 1.2019 18 6 3.4656 -1.2798 0.6953 19 7 3.4270 -1.2429 -0.7738 20 6 4.4639 -1.5663 -1.6079 21 1 4.3330 -1.5113 -2.6785 22 6 5.6830 -1.9647 -1.0772 23 7 5.8424 -2.0322 0.2276 24 14 7.0972 -2.4066 -2.2150 25 1 8.2802 -2.7959 -1.4061 26 1 6.6966 -3.5413 -3.0850 27 1 7.4393 -1.2330 -3.0582 28 6 2.0851 -0.8063 -1.2007 29 1 -0.3634 -1.0267 0.0436 30 1 -0.3634 0.5511 0.8675 31 1 -0.3633 0.4758 -0.9109 32 1 2.5885 1.6831 0.7446 33 1 1.4343 4.0063 -2.9093 34 1 1.7027 6.3015 -3.9951 35 1 2.6138 8.5825 -3.9194 36 1 3.9660 9.3250 -2.0085 37 1 4.4298 7.8014 -0.1367 38 1 2.1921 -0.1708 2.0795 39 1 1.4450 -1.6619 1.4223 40 1 3.6600 -2.2969 1.0357 41 1 4.2424 -0.6090 1.0627 42 1 6.6943 -2.3110 0.5983 43 1 2.1559 -0.1713 -2.0838 44 1 1.4523 -1.6699 -1.4050 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046354806.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:55:54 Heat of formation + Delta-G solvation = -30.908373 kcal Electronic energy + Delta-G solvation = -29827.189655 eV Core-core repulsion = 25711.218360 eV Total energy + Delta-G solvation = -4115.971294 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.141 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.91514 -39.99184 -38.96106 -38.09370 -37.28954 -34.13661 -33.43837 -32.06278 -31.70181 -30.49509 -29.70300 -28.67650 -25.74153 -25.39063 -24.93668 -23.65916 -22.52242 -21.82946 -20.28454 -19.46004 -19.14661 -18.64478 -17.91254 -16.92706 -16.88904 -16.47337 -15.80549 -15.56864 -14.90377 -14.82360 -14.80778 -14.63469 -14.30530 -13.93855 -13.74922 -13.37648 -13.31286 -13.09135 -12.91994 -12.81035 -12.26606 -12.10461 -11.97763 -11.82420 -11.70006 -11.63801 -10.94773 -10.87560 -10.80094 -10.45104 -10.43171 -10.38798 -10.10770 -10.02734 -9.65178 -9.58826 -9.56347 -8.80657 -8.57198 -8.42984 -6.79223 -5.68676 -3.01080 0.00737 0.39293 1.49514 2.05459 2.19857 3.03014 3.17532 3.42948 3.47121 3.48277 3.52390 3.64611 4.22103 4.26080 4.45285 4.52488 4.74639 4.77557 4.80118 5.04122 5.22405 5.25971 5.33253 5.42331 5.46771 5.51508 5.59283 5.71213 5.84903 5.91407 5.93087 5.95100 6.08576 6.11138 6.28901 6.32766 6.36747 6.47454 6.60932 6.74001 6.90784 7.00501 7.17806 7.55224 7.58412 7.69596 7.82778 8.22724 8.28206 9.25063 9.85168 10.50607 11.43187 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.011436 B = 0.003378 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2447.825511 B = 8287.938382 C = 9239.642520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.152 3.848 3 N -0.679 5.679 4 C 0.576 3.424 5 O -0.514 6.514 6 C 0.067 3.933 7 C -0.137 4.137 8 C -0.007 4.007 9 C -0.110 4.110 10 C -0.080 4.080 11 C -0.130 4.130 12 C -0.044 4.044 13 C -0.174 4.174 14 C 0.526 3.474 15 O -0.448 6.448 16 O -0.267 6.267 17 C -0.146 4.146 18 C 0.176 3.824 19 N -0.603 5.603 20 C -0.225 4.225 21 H 0.076 0.924 22 C -0.008 4.008 23 N -0.923 5.923 24 Si 0.911 3.089 25 H -0.290 1.290 26 H -0.285 1.285 27 H -0.286 1.286 28 C 0.131 3.869 29 H 0.066 0.934 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.408 0.592 33 H 0.172 0.828 34 H 0.141 0.859 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.142 0.858 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.045 0.955 41 H 0.047 0.953 42 H 0.252 0.748 43 H 0.055 0.945 44 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.564 19.171 -2.675 22.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.065 3.935 3 N -0.327 5.327 4 C 0.360 3.640 5 O -0.392 6.392 6 C 0.019 3.981 7 C -0.157 4.157 8 C -0.008 4.008 9 C -0.128 4.128 10 C -0.098 4.098 11 C -0.148 4.148 12 C -0.062 4.062 13 C -0.176 4.176 14 C 0.372 3.628 15 O -0.333 6.333 16 O -0.178 6.178 17 C -0.185 4.185 18 C 0.051 3.949 19 N -0.329 5.329 20 C -0.354 4.354 21 H 0.094 0.906 22 C -0.204 4.204 23 N -0.571 5.571 24 Si 0.741 3.259 25 H -0.216 1.216 26 H -0.212 1.212 27 H -0.213 1.213 28 C 0.004 3.996 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.243 0.757 33 H 0.189 0.811 34 H 0.159 0.841 35 H 0.152 0.848 36 H 0.153 0.847 37 H 0.160 0.840 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.074 0.926 44 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -10.438 18.775 -2.644 21.643 hybrid contribution 1.229 0.024 -0.291 1.263 sum -9.209 18.799 -2.936 21.138 Atomic orbital electron populations 1.21998 0.93932 1.02374 1.02476 1.21649 0.92786 0.80059 0.98963 1.45790 1.52440 1.12716 1.21791 1.17251 0.80843 0.82463 0.83459 1.90830 1.39374 1.74088 1.34918 1.21668 0.94397 0.94885 0.87120 1.22320 1.02482 0.91670 0.99270 1.19047 0.94771 0.93253 0.93689 1.21212 1.00494 0.93205 0.97881 1.21429 0.94856 0.95715 0.97817 1.21301 0.99388 1.00296 0.93780 1.21120 0.95721 0.90887 0.98453 1.20256 1.04748 0.96371 0.96218 1.20347 0.77463 0.78736 0.86262 1.90941 1.35312 1.73483 1.33609 1.83367 1.57919 1.34285 1.42268 1.23248 1.00581 0.98885 0.95788 1.21177 0.90034 0.99988 0.83668 1.44436 1.07762 1.78899 1.01821 1.19001 0.89404 1.38005 0.88944 0.90610 1.24767 0.97729 1.01891 0.96004 1.69934 1.24244 1.53697 1.09185 0.86214 0.81903 0.78254 0.79496 1.21604 1.21174 1.21287 1.21893 0.87751 0.94967 0.94941 0.91466 0.92906 0.91010 0.75680 0.81087 0.84129 0.84781 0.84727 0.83989 0.91556 0.90613 0.93710 0.93480 0.93759 0.92631 0.95378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 8.58 37.15 0.32 -1.83 16 2 C 0.15 2.64 0.82 -129.67 -0.11 2.53 16 3 N -0.68 -11.39 5.17 -46.71 -0.24 -11.63 16 4 C 0.58 9.51 7.16 -12.56 -0.09 9.42 16 5 O -0.51 -9.18 12.95 5.26 0.07 -9.11 16 6 C 0.07 0.97 6.86 -36.90 -0.25 0.72 16 7 C -0.14 -1.66 9.52 -37.27 -0.35 -2.02 16 8 C -0.01 -0.08 5.89 -104.92 -0.62 -0.70 16 9 C -0.11 -0.88 9.88 -39.27 -0.39 -1.27 16 10 C -0.08 -0.53 10.01 -39.50 -0.40 -0.92 16 11 C -0.13 -0.92 10.02 -39.47 -0.40 -1.32 16 12 C -0.04 -0.42 9.66 -39.33 -0.38 -0.80 16 13 C -0.17 -2.11 5.90 -104.76 -0.62 -2.73 16 14 C 0.53 7.83 8.19 34.30 0.28 8.11 16 15 O -0.45 -7.58 17.39 -19.37 -0.34 -7.92 16 16 O -0.27 -4.09 8.98 -20.36 -0.18 -4.27 16 17 C -0.15 -2.59 5.99 -24.89 -0.15 -2.74 16 18 C 0.18 4.18 5.37 -3.06 -0.02 4.17 16 19 N -0.60 -15.43 3.39 -170.06 -0.58 -16.01 16 20 C -0.23 -6.39 10.28 -15.06 -0.15 -6.54 16 21 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 22 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 23 N -0.92 -27.21 10.31 55.49 0.57 -26.64 16 24 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 C 0.13 2.82 6.10 -2.52 -0.02 2.80 16 29 H 0.07 0.89 8.11 -51.93 -0.42 0.47 16 30 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 31 H 0.07 1.09 6.53 -51.93 -0.34 0.75 16 32 H 0.41 6.56 7.82 -40.82 -0.32 6.24 16 33 H 0.17 1.85 7.47 -52.49 -0.39 1.46 16 34 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 35 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 36 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 37 H 0.14 1.26 7.80 -52.49 -0.41 0.85 16 38 H 0.07 1.03 8.05 -51.93 -0.42 0.61 16 39 H 0.08 1.23 8.01 -51.93 -0.42 0.81 16 40 H 0.04 1.18 7.52 -51.93 -0.39 0.79 16 41 H 0.05 1.24 7.37 -51.93 -0.38 0.86 16 42 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 43 H 0.06 1.27 6.31 -51.93 -0.33 0.94 16 44 H 0.03 0.60 8.04 -51.93 -0.42 0.18 16 LS Contribution 366.27 15.07 5.52 5.52 Total: -1.00 -33.39 366.27 -9.10 -42.49 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -5.47 Total: 3.46 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: -3.43 Total: 6.56 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: -0.25 Total: -54.28 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.45 Total: -21.30 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.39 -9.10 -42.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046354806.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.582 kcal (2) G-P(sol) polarization free energy of solvation -33.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds