Wall clock time and date at job start Wed Apr 1 2020 00:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 110.88885 * 2 1 4 4 C 1.34775 * 119.99789 * 59.30036 * 3 2 1 5 5 O 1.21280 * 119.99937 * 0.02562 * 4 3 2 6 6 C 1.50695 * 120.00040 * 180.02562 * 4 3 2 7 7 C 1.53865 * 113.59724 * 279.19251 * 6 4 3 8 8 C 1.53499 * 86.87116 * 220.37999 * 7 6 4 9 9 C 1.53323 * 87.60134 * 25.08845 * 8 7 6 10 10 C 1.52594 * 120.61544 * 149.61772 * 8 7 6 11 11 S 1.81492 * 89.77195 * 93.86536 * 10 8 7 12 12 O 1.42109 * 112.73732 * 280.05174 * 11 10 8 13 13 O 1.42098 * 112.74161 * 136.36370 * 11 10 8 14 14 C 1.52595 * 120.49927 * 260.59768 * 8 7 6 15 15 C 1.55161 * 111.00468 * 236.11905 * 2 1 3 16 16 C 1.54368 * 102.92121 * 206.45676 * 15 2 1 17 17 N 1.47021 * 107.29133 * 22.13540 * 16 15 2 18 18 C 1.36936 * 125.64956 * 181.05621 * 17 16 15 19 19 H 1.08002 * 119.99804 * 180.02562 * 18 17 16 20 20 C 1.38814 * 119.99826 * 0.04638 * 18 17 16 21 21 N 1.31616 * 120.00088 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99505 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47206 * 90.00206 * 22 20 18 24 24 H 1.48505 * 109.46866 * 209.99800 * 22 20 18 25 25 H 1.48499 * 109.47509 * 329.99608 * 22 20 18 26 26 C 1.47426 * 108.70119 * 1.09637 * 17 16 15 27 27 H 1.09002 * 109.47153 * 60.69939 * 1 2 3 28 28 H 1.09001 * 109.46832 * 300.70130 * 1 2 3 29 29 H 1.09004 * 109.47261 * 180.70111 * 1 2 3 30 30 H 0.96999 * 119.99932 * 239.29769 * 3 2 1 31 31 H 1.09001 * 112.83626 * 50.32875 * 6 4 3 32 32 H 1.09009 * 113.63992 * 334.86084 * 7 6 4 33 33 H 1.08993 * 113.64408 * 105.83948 * 7 6 4 34 34 H 1.09007 * 113.63448 * 220.40321 * 9 8 7 35 35 H 1.08996 * 113.72249 * 89.43607 * 9 8 7 36 36 H 1.08997 * 113.16593 * 209.09095 * 10 8 7 37 37 H 1.09001 * 113.16421 * 338.64117 * 10 8 7 38 38 H 1.09008 * 113.16392 * 21.26817 * 14 8 7 39 39 H 1.08997 * 113.16727 * 150.75324 * 14 8 7 40 40 H 1.09004 * 110.71609 * 324.78679 * 15 2 1 41 41 H 1.08995 * 110.72035 * 88.06433 * 15 2 1 42 42 H 1.09004 * 109.84586 * 262.72888 * 16 15 2 43 43 H 1.09003 * 109.90356 * 141.57603 * 16 15 2 44 44 H 0.97005 * 119.99589 * 180.02562 * 21 20 18 45 45 H 1.08997 * 110.36416 * 217.03358 * 26 17 16 46 46 H 1.09002 * 110.36801 * 94.71136 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3688 0.0000 4 6 1.7359 2.2108 1.0036 5 8 1.0190 1.8352 1.9070 6 6 2.2727 3.6189 1.0034 7 6 3.7180 3.7271 1.5199 8 6 3.2742 5.0056 2.2443 9 6 1.8492 4.4397 2.2339 10 6 3.9334 5.4248 3.5551 11 16 5.0905 6.4729 2.6295 12 8 6.1622 5.7357 2.0574 13 8 5.2775 7.7474 3.2294 14 6 3.5690 6.3775 1.6447 15 6 2.0861 -0.8075 -1.2026 16 6 3.4674 -1.2745 -0.6955 17 7 3.4271 -1.2429 0.7738 18 6 4.4640 -1.5662 1.6077 19 1 4.3332 -1.5110 2.6784 20 6 5.6832 -1.9646 1.0770 21 7 5.8425 -2.0321 -0.2278 22 14 7.0978 -2.4051 2.2147 23 1 7.0444 -3.8546 2.5327 24 1 8.3864 -2.0922 1.5462 25 1 6.9873 -1.6185 3.4694 26 6 2.0852 -0.8063 1.2006 27 1 -0.3633 0.5029 -0.8962 28 1 -0.3633 0.5247 0.8837 29 1 -0.3634 -1.0276 0.0126 30 1 2.6260 1.6689 -0.7223 31 1 2.1078 4.1343 0.0572 32 1 4.0029 2.9193 2.1941 33 1 4.4515 3.9019 0.7329 34 1 1.0842 5.1860 2.0194 35 1 1.6132 3.8299 3.1060 36 1 3.2689 5.9917 4.2071 37 1 4.4224 4.5993 4.0723 38 1 3.7545 6.3453 0.5710 39 1 2.8319 7.1324 1.9183 40 1 1.4467 -1.6627 -1.4215 41 1 2.1922 -0.1692 -2.0797 42 1 4.2426 -0.6002 -1.0597 43 1 3.6650 -2.2899 -1.0392 44 1 6.6944 -2.3109 -0.5986 45 1 2.1560 -0.1713 2.0837 46 1 1.4518 -1.6699 1.4031 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046419721.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:55:40 Heat of formation + Delta-G solvation = -56.833119 kcal Electronic energy + Delta-G solvation = -29080.697742 eV Core-core repulsion = 25099.046218 eV Total energy + Delta-G solvation = -3981.651524 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 2.76 seconds Orbital eigenvalues (eV) -41.75117 -40.31885 -38.56416 -38.21085 -37.04789 -35.62774 -34.02870 -33.37418 -31.59376 -30.32938 -27.64265 -27.51628 -26.82131 -25.98830 -25.10941 -22.26293 -21.47121 -20.38021 -20.00801 -19.22809 -18.96788 -18.20651 -17.37535 -17.20027 -17.09724 -17.01164 -16.66840 -16.20153 -15.92455 -15.67905 -15.35385 -15.11741 -14.67942 -14.24782 -14.02403 -13.89753 -13.56115 -13.39755 -13.38894 -13.30560 -13.28966 -13.22902 -13.09175 -13.01076 -12.83041 -12.74822 -12.35926 -12.10127 -12.05502 -11.96118 -11.70613 -11.69072 -11.51935 -11.45294 -11.18827 -11.12095 -10.71745 -10.41781 -9.91241 -8.86433 -7.86662 -5.19840 -0.75468 1.13117 1.42601 1.43320 1.51854 1.74980 2.32879 2.46956 2.78566 2.96588 3.10631 3.31993 3.39138 3.56816 3.59727 3.68197 3.72334 3.92261 4.06838 4.15340 4.20979 4.34803 4.37910 4.50955 4.64770 4.71057 4.73135 4.78585 4.86409 4.87937 4.88973 4.90049 4.93688 5.00265 5.03756 5.09765 5.13706 5.36131 5.38776 5.42238 5.66013 5.73320 5.81257 6.19584 6.74350 7.11397 7.42098 7.77413 8.41535 9.23073 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.010151 B = 0.003845 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2757.723719 B = 7279.755805 C = 9292.815191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.166 3.834 3 N -0.699 5.699 4 C 0.519 3.481 5 O -0.575 6.575 6 C -0.129 4.129 7 C -0.118 4.118 8 C -0.073 4.073 9 C -0.073 4.073 10 C -0.582 4.582 11 S 2.411 3.589 12 O -0.953 6.953 13 O -0.962 6.962 14 C -0.545 4.545 15 C -0.129 4.129 16 C 0.186 3.814 17 N -0.620 5.620 18 C -0.241 4.241 19 H 0.067 0.933 20 C -0.056 4.056 21 N -0.944 5.944 22 Si 0.969 3.031 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.276 1.276 26 C 0.130 3.870 27 H 0.077 0.923 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.408 0.592 31 H 0.150 0.850 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.081 0.919 36 H 0.171 0.829 37 H 0.120 0.880 38 H 0.149 0.851 39 H 0.180 0.820 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.019 0.981 43 H 0.006 0.994 44 H 0.247 0.753 45 H 0.028 0.972 46 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.269 19.142 -1.104 21.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.079 3.921 3 N -0.349 5.349 4 C 0.307 3.693 5 O -0.455 6.455 6 C -0.150 4.150 7 C -0.156 4.156 8 C -0.076 4.076 9 C -0.112 4.112 10 C -0.711 4.711 11 S 2.598 3.402 12 O -0.951 6.951 13 O -0.960 6.960 14 C -0.676 4.676 15 C -0.167 4.167 16 C 0.061 3.939 17 N -0.346 5.346 18 C -0.370 4.370 19 H 0.085 0.915 20 C -0.249 4.249 21 N -0.593 5.593 22 Si 0.798 3.202 23 H -0.213 1.213 24 H -0.216 1.216 25 H -0.201 1.201 26 C 0.004 3.996 27 H 0.095 0.905 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.243 0.757 31 H 0.168 0.832 32 H 0.089 0.911 33 H 0.115 0.885 34 H 0.125 0.875 35 H 0.100 0.900 36 H 0.189 0.811 37 H 0.139 0.861 38 H 0.168 0.832 39 H 0.197 0.803 40 H 0.106 0.894 41 H 0.116 0.884 42 H 0.037 0.963 43 H 0.024 0.976 44 H 0.057 0.943 45 H 0.047 0.953 46 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -9.392 19.301 -0.444 21.470 hybrid contribution 0.578 -1.413 0.431 1.587 sum -8.814 17.888 -0.013 19.941 Atomic orbital electron populations 1.21910 0.92007 1.02860 1.02998 1.21322 0.94060 0.81482 0.95276 1.45855 1.51385 1.11488 1.26211 1.20929 0.79566 0.88075 0.80755 1.90617 1.39394 1.78590 1.36886 1.22838 0.97093 0.91923 1.03150 1.22921 0.95949 0.96194 1.00510 1.21412 1.00175 0.93031 0.92957 1.22513 0.94210 0.97849 0.96670 1.30926 1.15719 1.15948 1.08550 1.08080 0.77202 0.74755 0.80178 1.93694 1.52423 1.73081 1.75860 1.93588 1.87875 1.39645 1.74845 1.30612 1.20174 1.01643 1.15191 1.23105 0.96768 1.00011 0.96863 1.20943 0.92984 0.97305 0.82696 1.44672 1.08500 1.78812 1.02605 1.19285 0.90658 1.37827 0.89237 0.91473 1.25460 0.99804 1.02272 0.97387 1.70136 1.24264 1.54475 1.10395 0.85227 0.79019 0.77903 0.78096 1.21272 1.21640 1.20108 1.21967 0.86206 0.94917 0.96496 0.90457 0.92177 0.91195 0.75670 0.83221 0.91051 0.88501 0.87506 0.90014 0.81148 0.86101 0.83234 0.80260 0.89382 0.88392 0.96311 0.97598 0.94335 0.95331 0.96272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.83 8.57 71.98 0.62 -3.21 16 2 C 0.17 5.50 0.82 5.00 0.00 5.50 16 3 N -0.70 -20.55 5.18 -416.64 -2.16 -22.71 16 4 C 0.52 15.15 6.73 87.66 0.59 15.74 16 5 O -0.57 -20.74 12.71 -3.03 -0.04 -20.78 16 6 C -0.13 -2.55 4.14 -10.96 -0.05 -2.59 16 7 C -0.12 -2.59 7.29 31.05 0.23 -2.36 16 8 C -0.07 -1.10 0.93 -52.18 -0.05 -1.14 16 9 C -0.07 -1.25 7.11 30.99 0.22 -1.03 16 10 C -0.58 -7.74 7.69 71.85 0.55 -7.19 16 11 S 2.41 36.21 7.54 -56.49 -0.43 35.78 16 12 O -0.95 -23.31 18.13 -127.88 -2.32 -25.63 16 13 O -0.96 -19.99 18.18 -127.88 -2.32 -22.32 16 14 C -0.55 -4.44 7.69 71.85 0.55 -3.89 16 15 C -0.13 -4.26 5.99 31.80 0.19 -4.07 16 16 C 0.19 8.78 5.36 86.74 0.47 9.24 16 17 N -0.62 -32.19 3.39 -691.88 -2.35 -34.54 16 18 C -0.24 -13.93 10.28 84.03 0.86 -13.07 16 19 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 20 C -0.06 -3.21 5.49 84.86 0.47 -2.74 16 21 N -0.94 -56.16 10.31 21.65 0.22 -55.93 16 22 Si 0.97 46.85 29.55 68.60 2.03 48.88 16 23 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 24 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 25 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 26 C 0.13 5.73 6.13 86.86 0.53 6.26 16 27 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.06 1.86 6.23 -2.39 -0.01 1.85 16 29 H 0.07 1.80 8.13 -2.38 -0.02 1.79 16 30 H 0.41 10.36 8.50 -92.71 -0.79 9.57 16 31 H 0.15 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.07 2.07 8.09 -2.38 -0.02 2.05 16 33 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.11 1.23 8.14 -2.38 -0.02 1.21 16 35 H 0.08 1.85 7.44 -2.39 -0.02 1.83 16 36 H 0.17 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.15 0.70 8.14 -2.38 -0.02 0.68 16 39 H 0.18 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.09 2.66 8.04 -2.38 -0.02 2.65 16 41 H 0.10 2.60 8.06 -2.39 -0.02 2.58 16 42 H 0.02 0.97 7.38 -2.38 -0.02 0.96 16 43 H 0.01 0.31 7.51 -2.39 -0.02 0.30 16 44 H 0.25 14.34 8.31 -92.70 -0.77 13.57 16 45 H 0.03 1.37 6.58 -2.39 -0.02 1.36 16 46 H 0.02 0.86 8.03 -2.39 -0.02 0.84 16 Total: -1.00 -84.01 375.82 -1.97 -85.98 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 0.20 Total: 15.81 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: 5.19 Total: -4.54 kcal Atomic # 7 Polarization: -108.90 SS G_CDS: -4.28 Total: -113.18 kcal Atomic # 8 Polarization: -64.04 SS G_CDS: -4.68 Total: -68.72 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Atomic # 16 Polarization: 36.21 SS G_CDS: -0.43 Total: 35.78 kcal Total: -84.01 -1.97 -85.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046419721.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.148 kcal (2) G-P(sol) polarization free energy of solvation -84.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.76 seconds