Wall clock time and date at job start Wed Apr 1 2020 01:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 119.99868 * 2 1 4 4 C 1.52993 * 109.47164 * 124.99973 * 3 2 1 5 5 C 1.50701 * 109.47164 * 179.97438 * 4 3 2 6 6 O 1.21285 * 119.99907 * 359.97438 * 5 4 3 7 7 N 1.34771 * 120.00512 * 179.97438 * 5 4 3 8 8 C 1.47155 * 120.97827 * 0.02562 * 7 5 4 9 9 C 1.53289 * 108.38433 * 129.44352 * 8 7 5 10 10 O 1.42962 * 109.22792 * 52.30139 * 9 8 7 11 11 C 1.42970 * 114.16339 * 297.42264 * 10 9 8 12 12 H 1.08999 * 109.54736 * 302.62567 * 11 10 9 13 13 C 1.52995 * 109.50865 * 182.50343 * 11 10 9 14 14 N 1.46499 * 109.47595 * 65.25000 * 13 11 10 15 15 C 1.34778 * 120.00278 * 179.97438 * 14 13 11 16 16 O 1.21278 * 119.99748 * 0.02562 * 15 14 13 17 17 C 1.50697 * 120.00209 * 180.02562 * 15 14 13 18 18 S 1.80999 * 109.47181 * 180.02562 * 17 15 14 19 19 C 1.76199 * 99.99825 * 179.97438 * 18 17 15 20 20 H 1.08002 * 120.00405 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99855 * 179.72221 * 19 18 17 22 22 N 1.31634 * 119.99756 * 0.27728 * 21 19 18 23 23 Si 1.86803 * 120.00005 * 180.27923 * 21 19 18 24 24 H 1.48498 * 109.47174 * 90.00123 * 23 21 19 25 25 H 1.48501 * 109.47062 * 210.00074 * 23 21 19 26 26 H 1.48504 * 109.46913 * 329.99873 * 23 21 19 27 27 C 1.47150 * 120.98643 * 179.97438 * 7 5 4 28 28 H 1.07999 * 119.99728 * 180.02562 * 1 2 3 29 29 H 1.07993 * 120.00451 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.00257 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.46797 * 4.99427 * 3 2 1 32 32 H 1.09004 * 109.46615 * 245.00274 * 3 2 1 33 33 H 1.09001 * 109.47298 * 60.00360 * 4 3 2 34 34 H 1.08995 * 109.47350 * 299.99646 * 4 3 2 35 35 H 1.09004 * 109.68295 * 249.16460 * 8 7 5 36 36 H 1.08994 * 109.68062 * 9.71882 * 8 7 5 37 37 H 1.09007 * 109.51305 * 172.22611 * 9 8 7 38 38 H 1.09004 * 109.51191 * 292.37491 * 9 8 7 39 39 H 1.09008 * 109.47218 * 305.24831 * 13 11 10 40 40 H 1.09007 * 109.47175 * 185.25180 * 13 11 10 41 41 H 0.97000 * 119.99972 * 359.97438 * 14 13 11 42 42 H 1.08999 * 109.47278 * 59.99800 * 17 15 14 43 43 H 1.09002 * 109.46837 * 300.00183 * 17 15 14 44 44 H 0.97000 * 119.99219 * 179.97438 * 22 21 19 45 45 H 1.09004 * 109.68235 * 110.83382 * 27 7 5 46 46 H 1.08999 * 109.70921 * 350.30291 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.7889 2.6380 1.1812 6 8 3.5710 3.4640 0.3203 7 7 4.7053 2.8872 2.1375 8 6 4.9873 1.9002 3.1919 9 6 6.5037 1.6871 3.2616 10 8 7.1520 2.9549 3.3890 11 6 6.9476 3.8310 2.2778 12 1 7.2900 3.3464 1.3635 13 6 7.7343 5.1249 2.4959 14 7 9.1694 4.8306 2.4914 15 6 10.0619 5.8253 2.6665 16 8 9.6769 6.9639 2.8284 17 6 11.5382 5.5226 2.6612 18 16 12.4688 7.0534 2.9194 19 6 14.1136 6.4235 2.8698 20 1 14.2834 5.3683 2.7141 21 6 15.1914 7.2844 3.0246 22 7 14.9845 8.5705 3.2138 23 14 16.9354 6.6178 2.9643 24 1 17.4295 6.6500 1.5643 25 1 17.8151 7.4549 3.8190 26 1 16.9480 5.2186 3.4616 27 6 5.4543 4.1536 2.1574 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9352 -0.0004 30 1 1.8501 -0.9353 0.0004 31 1 1.3585 2.1316 0.0895 32 1 2.6212 1.4026 -0.9315 33 1 3.7400 0.5067 1.0920 34 1 2.4773 1.2357 2.1129 35 1 4.6245 2.2726 4.1499 36 1 4.4947 0.9576 2.9536 37 1 6.7449 1.0665 4.1247 38 1 6.8443 1.1939 2.3511 39 1 7.4561 5.5621 3.4550 40 1 7.5052 5.8287 1.6957 41 1 9.4774 3.9199 2.3623 42 1 11.8160 5.0854 1.7022 43 1 11.7676 4.8189 3.4614 44 1 15.7377 9.1720 3.3224 45 1 5.1386 4.7534 3.0111 46 1 5.2709 4.7038 1.2345 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001064954055.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:57:13 Heat of formation + Delta-G solvation = -126.993829 kcal Electronic energy + Delta-G solvation = -26448.371018 eV Core-core repulsion = 22463.677097 eV Total energy + Delta-G solvation = -3984.693921 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.56848 -40.61204 -39.54321 -36.34603 -36.26433 -35.64457 -34.57635 -33.24700 -31.70881 -30.87545 -29.24829 -27.72894 -27.11612 -24.86721 -24.31343 -22.46109 -21.75997 -20.69001 -20.11997 -19.84768 -18.34288 -17.94202 -17.82030 -17.46610 -16.98703 -16.87253 -16.76865 -16.44358 -16.21790 -15.92229 -15.59478 -15.47141 -15.02950 -14.83746 -14.57203 -14.37490 -14.30146 -14.02836 -13.62281 -13.51074 -13.28643 -13.15803 -13.03418 -12.87982 -12.76102 -12.59504 -12.35573 -12.01318 -11.89849 -11.80383 -11.71435 -11.25979 -11.13499 -11.04397 -10.86773 -10.27088 -10.22203 -10.17231 -9.67967 -8.66094 -8.33870 -6.12078 1.26358 1.37887 1.43347 1.46594 1.52396 1.57861 1.60388 1.79402 2.26592 2.30463 2.57136 3.00405 3.32017 3.42050 3.63340 3.70764 3.86057 3.94446 3.97470 4.01712 4.11155 4.21715 4.25623 4.30199 4.33324 4.41087 4.45952 4.51618 4.56328 4.62079 4.63576 4.78154 4.85156 4.90844 4.95087 5.07824 5.18175 5.27712 5.36643 5.42693 5.76634 5.91076 6.07134 6.20653 6.25707 6.46906 7.04820 7.07424 7.21753 8.75447 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.031999 B = 0.001579 C = 0.001558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.823755 B =17729.741544 C =17965.240531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.156 4.156 3 C -0.080 4.080 4 C -0.125 4.125 5 C 0.509 3.491 6 O -0.586 6.586 7 N -0.616 5.616 8 C 0.069 3.931 9 C 0.040 3.960 10 O -0.387 6.387 11 C 0.086 3.914 12 H 0.079 0.921 13 C 0.130 3.870 14 N -0.707 5.707 15 C 0.534 3.466 16 O -0.566 6.566 17 C -0.128 4.128 18 S -0.152 6.152 19 C -0.547 4.547 20 H 0.083 0.917 21 C 0.014 3.986 22 N -0.912 5.912 23 Si 0.999 3.001 24 H -0.268 1.268 25 H -0.278 1.278 26 H -0.257 1.257 27 C 0.085 3.915 28 H 0.110 0.890 29 H 0.090 0.910 30 H 0.128 0.872 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.125 0.875 34 H 0.118 0.882 35 H 0.086 0.914 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.416 0.584 42 H 0.111 0.889 43 H 0.110 0.890 44 H 0.271 0.729 45 H 0.082 0.918 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.811 -25.842 -1.803 37.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.174 4.174 3 C -0.118 4.118 4 C -0.164 4.164 5 C 0.300 3.700 6 O -0.466 6.466 7 N -0.350 5.350 8 C -0.053 4.053 9 C -0.036 4.036 10 O -0.306 6.306 11 C 0.027 3.973 12 H 0.096 0.904 13 C 0.006 3.994 14 N -0.361 5.361 15 C 0.320 3.680 16 O -0.444 6.444 17 C -0.280 4.280 18 S 0.076 5.924 19 C -0.695 4.695 20 H 0.101 0.899 21 C -0.191 4.191 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.193 1.193 25 H -0.203 1.203 26 H -0.181 1.181 27 C -0.039 4.039 28 H 0.129 0.871 29 H 0.108 0.892 30 H 0.146 0.854 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.143 0.857 34 H 0.136 0.864 35 H 0.105 0.895 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.100 0.900 41 H 0.253 0.747 42 H 0.129 0.871 43 H 0.128 0.872 44 H 0.080 0.920 45 H 0.100 0.900 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -27.427 -23.329 -1.791 36.051 hybrid contribution 1.390 -1.257 -0.472 1.933 sum -26.037 -24.586 -2.263 35.881 Atomic orbital electron populations 1.24048 0.96245 1.02380 1.00704 1.22989 0.96063 0.98113 1.00240 1.20467 0.97684 0.95799 0.97871 1.21690 0.98998 0.93895 1.01818 1.21505 0.79083 0.89867 0.79577 1.90712 1.66844 1.50132 1.38889 1.48275 1.39424 1.18442 1.28847 1.22774 0.97573 0.93864 0.91097 1.23282 0.90850 0.84812 1.04681 1.88054 1.73484 1.27158 1.41886 1.22426 0.93614 0.90584 0.90644 0.90357 1.21294 0.79273 0.95796 1.03034 1.45577 1.05606 1.10974 1.73985 1.20064 0.87818 0.84818 0.75272 1.90695 1.80998 1.22927 1.49790 1.23357 0.94013 1.03822 1.06772 1.85584 1.01812 1.10128 1.94925 1.23217 0.91535 0.97257 1.57486 0.89858 1.26130 1.04494 0.94755 0.93699 1.70190 1.33435 1.04277 1.46914 0.84948 0.75809 0.78601 0.78578 1.19328 1.20296 1.18134 1.22050 0.90540 0.87035 1.04245 0.87141 0.89154 0.85406 0.92618 0.91696 0.85725 0.86405 0.89530 0.85197 0.85003 0.91623 0.91387 0.90035 0.74664 0.87125 0.87192 0.91999 0.90015 0.89198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.59 14.32 67.78 0.97 -0.62 16 2 C -0.16 -1.19 9.52 25.64 0.24 -0.94 16 3 C -0.08 -0.89 4.95 29.85 0.15 -0.74 16 4 C -0.12 -0.88 4.05 29.85 0.12 -0.76 16 5 C 0.51 7.99 7.71 87.66 0.68 8.66 16 6 O -0.59 -14.97 15.45 -3.05 -0.05 -15.02 16 7 N -0.62 -7.89 3.02 -817.45 -2.47 -10.36 16 8 C 0.07 0.36 6.54 86.35 0.56 0.92 16 9 C 0.04 0.28 6.98 72.08 0.50 0.78 16 10 O -0.39 -5.88 10.34 -148.98 -1.54 -7.42 16 11 C 0.09 1.40 2.81 30.68 0.09 1.48 16 12 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 13 C 0.13 2.95 5.34 86.38 0.46 3.42 16 14 N -0.71 -18.34 5.51 -463.06 -2.55 -20.89 16 15 C 0.53 20.02 7.85 87.66 0.69 20.71 16 16 O -0.57 -26.58 15.86 -3.02 -0.05 -26.63 16 17 C -0.13 -5.13 6.16 71.23 0.44 -4.69 16 18 S -0.15 -8.50 20.57 -56.49 -1.16 -9.66 16 19 C -0.55 -31.39 9.50 67.96 0.65 -30.75 16 20 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 21 C 0.01 0.80 5.49 84.86 0.47 1.26 16 22 N -0.91 -56.32 13.22 21.65 0.29 -56.04 16 23 Si 1.00 43.63 29.55 68.60 2.03 45.66 16 24 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 25 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 26 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 27 C 0.09 1.40 5.92 86.34 0.51 1.91 16 28 H 0.11 0.60 8.06 -2.91 -0.02 0.58 16 29 H 0.09 0.82 7.84 -2.91 -0.02 0.80 16 30 H 0.13 0.51 8.06 -2.91 -0.02 0.48 16 31 H 0.06 0.82 7.75 -2.39 -0.02 0.80 16 32 H 0.06 0.92 8.10 -2.39 -0.02 0.90 16 33 H 0.12 0.19 7.66 -2.39 -0.02 0.17 16 34 H 0.12 0.36 8.01 -2.39 -0.02 0.34 16 35 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.13 -0.18 6.05 -2.39 -0.01 -0.20 16 37 H 0.13 0.37 8.14 -2.38 -0.02 0.35 16 38 H 0.07 0.37 8.14 -2.38 -0.02 0.35 16 39 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 40 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 41 H 0.42 8.22 8.47 -92.71 -0.79 7.43 16 42 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 43 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 44 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 45 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 46 H 0.09 1.80 7.08 -2.39 -0.02 1.78 16 Total: -1.00 -85.06 398.47 1.21 -83.84 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 0.19 Total: 15.86 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: 6.52 Total: 0.64 kcal Atomic # 7 Polarization: -82.55 SS G_CDS: -4.73 Total: -87.28 kcal Atomic # 8 Polarization: -47.43 SS G_CDS: -1.63 Total: -49.06 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.16 Total: -9.66 kcal Total: -85.06 1.21 -83.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001064954055.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.151 kcal (2) G-P(sol) polarization free energy of solvation -85.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds