Wall clock time and date at job start Wed Apr 1 2020 01:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50703 * 119.99839 * 2 1 4 4 C 1.53002 * 109.47143 * 125.00076 * 3 2 1 5 5 C 1.50696 * 109.47129 * 179.97438 * 4 3 2 6 6 O 1.21282 * 119.99739 * 0.02562 * 5 4 3 7 7 N 1.34773 * 120.00208 * 179.97438 * 5 4 3 8 8 C 1.47157 * 120.98018 * 359.97438 * 7 5 4 9 9 C 1.53297 * 108.38509 * 230.55565 * 8 7 5 10 10 O 1.42965 * 109.26243 * 307.72121 * 9 8 7 11 11 C 1.42964 * 114.16677 * 62.50250 * 10 9 8 12 12 H 1.08995 * 109.51470 * 57.44853 * 11 10 9 13 13 C 1.52999 * 109.50738 * 177.55122 * 11 10 9 14 14 N 1.46495 * 109.47401 * 299.89299 * 13 11 10 15 15 C 1.34779 * 120.00299 * 180.02562 * 14 13 11 16 16 O 1.21283 * 119.99753 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99843 * 180.02562 * 15 14 13 18 18 S 1.81001 * 109.46896 * 179.97438 * 17 15 14 19 19 C 1.76192 * 100.00053 * 179.97438 * 18 17 15 20 20 H 1.08000 * 120.00436 * 0.02562 * 19 18 17 21 21 C 1.38805 * 119.99929 * 179.97438 * 19 18 17 22 22 N 1.31624 * 120.00253 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99752 * 179.72153 * 21 19 18 24 24 H 1.48497 * 109.47323 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46790 * 120.00306 * 23 21 19 26 26 H 1.48501 * 109.47364 * 240.00335 * 23 21 19 27 27 C 1.47155 * 120.98426 * 180.02562 * 7 5 4 28 28 H 1.07999 * 119.99880 * 180.02562 * 1 2 3 29 29 H 1.07998 * 119.99928 * 0.02562 * 1 2 3 30 30 H 1.07998 * 119.99928 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.47050 * 4.99741 * 3 2 1 32 32 H 1.09007 * 109.46751 * 244.99456 * 3 2 1 33 33 H 1.09000 * 109.47022 * 59.99579 * 4 3 2 34 34 H 1.08997 * 109.46836 * 300.00115 * 4 3 2 35 35 H 1.09005 * 109.68176 * 350.27828 * 8 7 5 36 36 H 1.08998 * 109.68589 * 110.79534 * 8 7 5 37 37 H 1.09002 * 109.51434 * 67.61959 * 9 8 7 38 38 H 1.09000 * 109.51260 * 187.72078 * 9 8 7 39 39 H 1.09003 * 109.46848 * 179.89516 * 13 11 10 40 40 H 1.09003 * 109.47502 * 59.89554 * 13 11 10 41 41 H 0.97004 * 119.99811 * 0.02562 * 14 13 11 42 42 H 1.08998 * 109.46989 * 60.00366 * 17 15 14 43 43 H 1.08996 * 109.47123 * 299.99392 * 17 15 14 44 44 H 0.97000 * 120.00481 * 179.97438 * 22 21 19 45 45 H 1.08996 * 109.68004 * 9.72515 * 27 7 5 46 46 H 1.09000 * 109.67681 * 249.16399 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3332 1.1816 5 6 3.7890 2.6380 1.1813 6 8 3.5703 3.4644 0.3209 7 7 4.7054 2.8871 2.1376 8 6 4.9866 1.9005 3.1926 9 6 4.9090 2.6087 4.5499 10 8 5.7454 3.7679 4.5256 11 6 5.3537 4.7522 3.5656 12 1 4.3259 5.0597 3.7580 13 6 6.2788 5.9662 3.6719 14 7 6.1840 6.5360 5.0182 15 6 6.9153 7.6202 5.3441 16 8 7.6522 8.1238 4.5230 17 6 6.8182 8.2059 6.7292 18 16 7.9125 9.6422 6.8550 19 6 7.6075 10.1140 8.5249 20 1 6.9116 9.5490 9.1273 21 6 8.2624 11.2113 9.0668 22 7 9.1110 11.8998 8.3329 23 14 7.9331 11.7162 10.8349 24 1 6.9411 10.7901 11.4376 25 1 9.1985 11.6582 11.6100 26 1 7.3985 13.1014 10.8628 27 6 5.4536 4.1541 2.1582 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6214 1.4026 -0.9314 33 1 3.7400 0.5066 1.0921 34 1 2.4773 1.2356 2.1130 35 1 4.2475 1.1002 3.1533 36 1 5.9845 1.4857 3.0509 37 1 3.8793 2.9077 4.7463 38 1 5.2472 1.9312 5.3340 39 1 5.9807 6.7155 2.9385 40 1 7.3064 5.6579 3.4793 41 1 5.5949 6.1329 5.6750 42 1 7.1170 7.4567 7.4623 43 1 5.7906 8.5138 6.9223 44 1 9.5684 12.6668 8.7114 45 1 5.0237 4.8460 1.4340 46 1 6.4989 3.9670 1.9125 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001064954056.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:57:17 Heat of formation + Delta-G solvation = -126.898121 kcal Electronic energy + Delta-G solvation = -26470.440013 eV Core-core repulsion = 22485.750243 eV Total energy + Delta-G solvation = -3984.689771 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.56887 -40.60921 -39.54258 -36.34616 -36.26306 -35.63343 -34.57905 -33.24862 -31.70818 -30.87232 -29.25641 -27.73166 -27.11401 -24.86785 -24.31698 -22.44126 -21.75717 -20.69065 -20.12501 -19.84905 -18.34097 -17.94792 -17.82627 -17.45218 -17.00995 -16.87724 -16.76878 -16.43404 -16.10139 -15.91621 -15.74315 -15.51913 -14.92411 -14.84516 -14.57089 -14.37050 -14.31181 -14.05701 -13.62243 -13.45798 -13.32621 -13.15349 -13.07280 -12.90342 -12.69757 -12.58151 -12.34859 -12.03605 -11.89841 -11.80791 -11.69824 -11.25365 -11.15238 -11.04052 -10.87288 -10.26686 -10.21983 -10.16399 -9.68163 -8.66144 -8.34115 -6.12190 1.26389 1.37718 1.42157 1.46671 1.52544 1.58500 1.60597 1.79300 2.26462 2.30629 2.57023 3.00223 3.32105 3.42046 3.62991 3.71219 3.86021 3.93921 3.96942 4.01827 4.13854 4.20005 4.25257 4.30305 4.33127 4.41908 4.45756 4.51739 4.56958 4.62284 4.63949 4.77543 4.84442 4.92126 4.94460 5.07867 5.18154 5.27815 5.36812 5.42942 5.76641 5.91047 6.06587 6.20792 6.25714 6.47628 7.04827 7.07312 7.22136 8.75447 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.029290 B = 0.001597 C = 0.001573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.715049 B =17533.569339 C =17790.936123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.156 4.156 3 C -0.080 4.080 4 C -0.125 4.125 5 C 0.509 3.491 6 O -0.586 6.586 7 N -0.616 5.616 8 C 0.069 3.931 9 C 0.040 3.960 10 O -0.386 6.386 11 C 0.086 3.914 12 H 0.077 0.923 13 C 0.131 3.869 14 N -0.707 5.707 15 C 0.534 3.466 16 O -0.566 6.566 17 C -0.128 4.128 18 S -0.152 6.152 19 C -0.546 4.546 20 H 0.083 0.917 21 C 0.014 3.986 22 N -0.912 5.912 23 Si 1.000 3.000 24 H -0.256 1.256 25 H -0.274 1.274 26 H -0.274 1.274 27 C 0.085 3.915 28 H 0.110 0.890 29 H 0.090 0.910 30 H 0.128 0.872 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.123 0.877 34 H 0.119 0.881 35 H 0.130 0.870 36 H 0.088 0.912 37 H 0.064 0.936 38 H 0.133 0.867 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.417 0.583 42 H 0.110 0.890 43 H 0.110 0.890 44 H 0.271 0.729 45 H 0.090 0.910 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.866 -31.469 -10.562 37.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.174 4.174 3 C -0.118 4.118 4 C -0.164 4.164 5 C 0.300 3.700 6 O -0.466 6.466 7 N -0.350 5.350 8 C -0.053 4.053 9 C -0.036 4.036 10 O -0.305 6.305 11 C 0.027 3.973 12 H 0.095 0.905 13 C 0.006 3.994 14 N -0.361 5.361 15 C 0.320 3.680 16 O -0.444 6.444 17 C -0.279 4.279 18 S 0.075 5.925 19 C -0.694 4.694 20 H 0.101 0.899 21 C -0.191 4.191 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.180 1.180 25 H -0.199 1.199 26 H -0.200 1.200 27 C -0.039 4.039 28 H 0.129 0.871 29 H 0.108 0.892 30 H 0.146 0.854 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.141 0.859 34 H 0.137 0.863 35 H 0.148 0.852 36 H 0.106 0.894 37 H 0.082 0.918 38 H 0.150 0.850 39 H 0.099 0.901 40 H 0.086 0.914 41 H 0.254 0.746 42 H 0.128 0.872 43 H 0.128 0.872 44 H 0.080 0.920 45 H 0.108 0.892 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.506 -30.080 -12.286 36.002 hybrid contribution -1.028 0.113 1.664 1.960 sum -16.534 -29.967 -10.621 35.836 Atomic orbital electron populations 1.24051 0.96243 1.02380 1.00680 1.22985 0.96046 0.98107 1.00262 1.20468 0.97670 0.95804 0.97871 1.21691 0.99000 0.93908 1.01814 1.21500 0.78811 0.89889 0.79826 1.90710 1.66929 1.50062 1.38870 1.48277 1.39553 1.18236 1.28927 1.22774 1.04682 0.91698 0.86142 1.23277 0.95548 0.87178 0.97628 1.88043 1.55071 1.29708 1.57687 1.22431 0.98207 0.87907 0.88746 0.90475 1.21307 1.00325 0.93336 0.84417 1.45553 1.45943 1.29485 1.15070 1.20066 0.79192 0.80061 0.88666 1.90696 1.39993 1.61725 1.52031 1.23353 1.05394 1.02079 0.97108 1.85583 1.56659 1.32295 1.17934 1.23248 1.30852 1.17708 0.97593 0.89860 1.26130 0.93949 0.95098 1.03936 1.70188 1.27056 1.18856 1.38724 0.84896 0.78517 0.78265 0.76192 1.17985 1.19907 1.19974 1.22054 0.97728 0.87003 0.97073 0.87141 0.89164 0.85428 0.92593 0.91716 0.85862 0.86279 0.85245 0.89410 0.91760 0.84963 0.90065 0.91396 0.74635 0.87199 0.87157 0.91995 0.89199 0.89959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.59 14.32 67.78 0.97 -0.62 16 2 C -0.16 -1.19 9.52 25.64 0.24 -0.94 16 3 C -0.08 -0.89 4.95 29.85 0.15 -0.74 16 4 C -0.12 -0.88 4.06 29.85 0.12 -0.76 16 5 C 0.51 7.98 7.71 87.66 0.68 8.65 16 6 O -0.59 -14.95 15.45 -3.04 -0.05 -14.99 16 7 N -0.62 -7.88 3.02 -817.43 -2.47 -10.34 16 8 C 0.07 0.36 6.54 86.35 0.56 0.92 16 9 C 0.04 0.28 6.98 72.08 0.50 0.79 16 10 O -0.39 -5.84 10.14 -148.98 -1.51 -7.35 16 11 C 0.09 1.40 2.86 30.68 0.09 1.49 16 12 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 13 C 0.13 2.96 5.37 86.38 0.46 3.42 16 14 N -0.71 -18.39 5.45 -463.06 -2.52 -20.92 16 15 C 0.53 20.05 7.85 87.66 0.69 20.73 16 16 O -0.57 -26.61 15.86 -3.04 -0.05 -26.66 16 17 C -0.13 -5.13 6.16 71.24 0.44 -4.69 16 18 S -0.15 -8.52 20.57 -56.49 -1.16 -9.68 16 19 C -0.55 -31.36 9.50 67.96 0.65 -30.71 16 20 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 21 C 0.01 0.77 5.49 84.86 0.47 1.24 16 22 N -0.91 -56.32 13.22 21.65 0.29 -56.03 16 23 Si 1.00 43.70 29.55 68.60 2.03 45.72 16 24 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 25 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 26 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 27 C 0.09 1.40 5.93 86.34 0.51 1.91 16 28 H 0.11 0.60 8.06 -2.91 -0.02 0.58 16 29 H 0.09 0.83 7.84 -2.91 -0.02 0.81 16 30 H 0.13 0.51 8.06 -2.91 -0.02 0.48 16 31 H 0.06 0.82 7.75 -2.39 -0.02 0.81 16 32 H 0.06 0.91 8.10 -2.38 -0.02 0.90 16 33 H 0.12 0.24 8.02 -2.39 -0.02 0.22 16 34 H 0.12 0.31 7.66 -2.39 -0.02 0.30 16 35 H 0.13 -0.17 6.05 -2.38 -0.01 -0.19 16 36 H 0.09 0.42 8.14 -2.39 -0.02 0.41 16 37 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.13 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.42 8.35 8.35 -92.71 -0.77 7.57 16 42 H 0.11 3.97 8.14 -2.40 -0.02 3.95 16 43 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 44 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 45 H 0.09 1.79 7.08 -2.39 -0.02 1.77 16 46 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -84.94 398.17 1.28 -83.66 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.20 Total: 15.90 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: 6.53 Total: 0.69 kcal Atomic # 7 Polarization: -82.59 SS G_CDS: -4.71 Total: -87.29 kcal Atomic # 8 Polarization: -47.40 SS G_CDS: -1.61 Total: -49.00 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.16 Total: -9.68 kcal Total: -84.94 1.28 -83.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001064954056.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.239 kcal (2) G-P(sol) polarization free energy of solvation -84.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds