Wall clock time and date at job start Wed Apr 1 2020 01:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.32996 * 120.00245 * 2 1 4 4 C 1.50700 * 119.99692 * 359.97438 * 3 2 1 5 5 C 1.47106 * 120.00413 * 180.02562 * 3 2 1 6 6 O 1.21617 * 119.99440 * 322.43582 * 5 3 2 7 7 N 1.34774 * 120.00396 * 142.43590 * 5 3 2 8 8 C 1.47144 * 120.98157 * 174.53245 * 7 5 3 9 9 C 1.53300 * 108.38794 * 129.44355 * 8 7 5 10 10 O 1.42959 * 109.22070 * 52.30005 * 9 8 7 11 11 C 1.42968 * 114.16637 * 297.42011 * 10 9 8 12 12 H 1.08997 * 109.50912 * 302.66113 * 11 10 9 13 13 C 1.53000 * 109.51136 * 182.50930 * 11 10 9 14 14 N 1.46488 * 109.47353 * 65.00047 * 13 11 10 15 15 C 1.34784 * 120.00284 * 180.02562 * 14 13 11 16 16 O 1.21286 * 119.99459 * 359.97438 * 15 14 13 17 17 C 1.50694 * 120.00044 * 180.02562 * 15 14 13 18 18 S 1.81005 * 109.46715 * 179.97438 * 17 15 14 19 19 C 1.76208 * 99.99637 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00142 * 359.97438 * 19 18 17 21 21 C 1.38804 * 119.99878 * 179.97438 * 19 18 17 22 22 N 1.31635 * 119.99866 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00024 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47160 * 89.99898 * 23 21 19 25 25 H 1.48499 * 109.46927 * 209.99730 * 23 21 19 26 26 H 1.48500 * 109.47352 * 329.99892 * 23 21 19 27 27 C 1.47158 * 120.97962 * 354.50602 * 7 5 3 28 28 H 1.09000 * 109.47390 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47174 * 300.00664 * 1 2 3 30 30 H 1.09002 * 109.47087 * 60.00140 * 1 2 3 31 31 H 1.08002 * 119.99944 * 179.97438 * 2 1 3 32 32 H 1.09003 * 109.47567 * 300.74315 * 4 3 2 33 33 H 1.08997 * 109.47003 * 60.75330 * 4 3 2 34 34 H 1.09005 * 109.47040 * 180.74643 * 4 3 2 35 35 H 1.09007 * 109.68164 * 249.16159 * 8 7 5 36 36 H 1.09000 * 109.68391 * 9.67544 * 8 7 5 37 37 H 1.08996 * 109.50831 * 292.37780 * 9 8 7 38 38 H 1.08998 * 109.51309 * 172.22402 * 9 8 7 39 39 H 1.09001 * 109.46853 * 185.00185 * 13 11 10 40 40 H 1.09004 * 109.47053 * 304.99880 * 13 11 10 41 41 H 0.97004 * 120.00383 * 0.02562 * 14 13 11 42 42 H 1.09001 * 109.47294 * 299.99658 * 17 15 14 43 43 H 1.08996 * 109.47515 * 60.00054 * 17 15 14 44 44 H 0.96991 * 119.99756 * 180.02562 * 22 21 19 45 45 H 1.08998 * 109.67616 * 110.83842 * 27 7 5 46 46 H 1.08994 * 109.68119 * 350.28098 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4185 2.4568 -0.0006 5 6 3.6430 1.1518 -0.0006 6 8 4.2513 0.3168 0.6411 7 7 4.3167 2.0771 -0.7122 8 6 5.7830 2.1726 -0.6345 9 6 6.3431 2.1841 -2.0614 10 8 5.6800 3.1990 -2.8191 11 6 4.2736 2.9915 -2.9705 12 1 4.0968 2.0234 -3.4392 13 6 3.6850 4.0995 -3.8462 14 7 4.2388 3.9993 -5.1986 15 6 3.8616 4.8783 -6.1482 16 8 3.0633 5.7520 -5.8830 17 6 4.4309 4.7748 -7.5396 18 16 3.7346 6.0858 -8.5754 19 6 4.5488 5.7371 -10.0987 20 1 5.2402 4.9100 -10.1645 21 6 4.3016 6.5254 -11.2140 22 7 3.4585 7.5332 -11.1339 23 14 5.1652 6.1563 -12.8287 24 1 4.3437 5.2089 -13.6242 25 1 5.3462 7.4167 -13.5927 26 1 6.4923 5.5497 -12.5528 27 6 3.6075 3.0214 -1.5902 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.0469 -0.9353 0.0004 32 1 0.7821 2.5087 -0.8841 33 1 0.8016 2.5206 0.8958 34 1 2.1267 3.2853 -0.0139 35 1 6.0643 3.0928 -0.1223 36 1 6.1785 1.3145 -0.0911 37 1 6.1737 1.2131 -2.5268 38 1 7.4125 2.3926 -2.0311 39 1 2.6011 3.9919 -3.8884 40 1 3.9373 5.0711 -3.4213 41 1 4.8770 3.3003 -5.4109 42 1 5.5149 4.8816 -7.4976 43 1 4.1777 3.8035 -7.9645 44 1 3.2855 8.0838 -11.9134 45 1 3.6699 4.0270 -1.1742 46 1 2.5626 2.7249 -1.6803 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001065027842.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:57:38 Heat of formation + Delta-G solvation = -94.076603 kcal Electronic energy + Delta-G solvation = -27108.585322 eV Core-core repulsion = 23125.318799 eV Total energy + Delta-G solvation = -3983.266523 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.02534 -39.39110 -38.65208 -36.17392 -35.28604 -34.77422 -32.42895 -32.21962 -30.32319 -29.35304 -28.54489 -26.75639 -25.77585 -25.37460 -23.96894 -22.08373 -20.89809 -20.28767 -18.82130 -17.88582 -17.32941 -17.26600 -16.76504 -16.38901 -16.00917 -15.86261 -15.45001 -15.11135 -14.98222 -14.80328 -14.45149 -14.31085 -13.99681 -13.82844 -13.42676 -13.29474 -13.19651 -13.10189 -12.90796 -12.76541 -12.56544 -12.30166 -12.09974 -11.83013 -11.80618 -11.66982 -11.13131 -11.06324 -11.02311 -10.76208 -10.59493 -10.23468 -9.81714 -9.54820 -9.45637 -9.07179 -9.02253 -8.91953 -8.23781 -6.49839 -6.21713 -3.92086 1.00998 2.31579 2.62305 3.01374 3.07910 3.20821 3.22430 3.27862 3.31912 3.67090 3.96054 4.20539 4.26298 4.35099 4.43079 4.47779 4.61097 4.69334 4.72459 4.77481 4.88434 4.93382 4.99948 5.13451 5.15553 5.16306 5.20390 5.21820 5.25755 5.36915 5.39056 5.44100 5.47355 5.58910 5.77105 5.81114 5.90012 5.98272 6.07292 6.15097 6.53818 6.67870 6.84101 7.59804 7.66392 7.68494 8.35428 8.59088 9.23716 10.85728 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.019656 B = 0.001917 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.125112 B =14602.955802 C =15304.583743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.078 4.078 3 C -0.191 4.191 4 C -0.122 4.122 5 C 0.562 3.438 6 O -0.541 6.541 7 N -0.612 5.612 8 C 0.075 3.925 9 C 0.049 3.951 10 O -0.368 6.368 11 C 0.065 3.935 12 H 0.072 0.928 13 C 0.132 3.868 14 N -0.734 5.734 15 C 0.533 3.467 16 O -0.519 6.519 17 C -0.153 4.153 18 S -0.060 6.060 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.074 3.926 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.120 0.880 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.102 0.898 37 H 0.057 0.943 38 H 0.110 0.890 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.401 0.599 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.268 0.732 45 H 0.086 0.914 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.086 -14.854 24.226 28.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.098 4.098 3 C -0.194 4.194 4 C -0.178 4.178 5 C 0.352 3.648 6 O -0.419 6.419 7 N -0.345 5.345 8 C -0.047 4.047 9 C -0.029 4.029 10 O -0.286 6.286 11 C 0.006 3.994 12 H 0.089 0.911 13 C 0.008 3.992 14 N -0.388 5.388 15 C 0.320 3.680 16 O -0.393 6.393 17 C -0.303 4.303 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 C -0.050 4.050 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.138 0.862 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.120 0.880 37 H 0.075 0.925 38 H 0.128 0.872 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.235 0.765 42 H 0.109 0.891 43 H 0.108 0.892 44 H 0.078 0.922 45 H 0.104 0.896 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.085 -13.509 24.856 28.367 hybrid contribution 1.798 -1.799 -1.293 2.853 sum -0.287 -15.308 23.563 28.100 Atomic orbital electron populations 1.20975 0.91735 1.03237 1.02811 1.23475 0.96602 0.97266 0.92420 1.21338 0.92277 0.97161 1.08633 1.21079 1.00059 0.93815 1.02859 1.18556 0.87914 0.79857 0.78483 1.90796 1.70092 1.37490 1.43501 1.47994 1.07270 1.34278 1.45003 1.22356 0.79671 1.04168 0.98532 1.22996 0.97825 0.92013 0.90034 1.88075 1.19417 1.47859 1.73269 1.22788 0.82431 0.99520 0.94646 0.91054 1.21191 0.97948 0.98137 0.81969 1.45849 1.48332 1.34742 1.09924 1.20301 0.81086 0.80554 0.86100 1.90703 1.33268 1.33799 1.81522 1.23521 1.04392 1.07050 0.95379 1.85379 1.58475 1.35075 1.04444 1.22869 1.30571 1.18783 0.96094 0.90923 1.24997 0.95240 0.94484 0.98909 1.70017 1.32989 1.16752 1.30541 0.86165 0.79602 0.77918 0.81796 1.20285 1.20760 1.19698 1.22764 0.98093 0.94305 0.89823 0.91325 0.90611 0.90449 0.86187 0.90404 0.90863 0.91020 0.90320 0.87955 0.92495 0.87203 0.89801 0.90365 0.76498 0.89139 0.89241 0.92193 0.89614 0.87166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.56 9.16 36.00 0.33 -0.23 16 2 C -0.08 -0.53 9.82 -36.13 -0.35 -0.88 16 3 C -0.19 -1.44 5.26 -102.84 -0.54 -1.98 16 4 C -0.12 -0.62 7.16 36.01 0.26 -0.36 16 5 C 0.56 5.63 7.31 -12.66 -0.09 5.54 16 6 O -0.54 -7.26 16.24 5.26 0.09 -7.18 16 7 N -0.61 -5.09 3.01 -173.67 -0.52 -5.62 16 8 C 0.08 0.57 6.65 -3.54 -0.02 0.55 16 9 C 0.05 0.35 6.99 37.31 0.26 0.61 16 10 O -0.37 -3.41 10.33 -35.23 -0.36 -3.77 16 11 C 0.07 0.53 2.81 -26.58 -0.07 0.45 16 12 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 13 C 0.13 1.38 5.34 -4.05 -0.02 1.36 16 14 N -0.73 -9.48 5.50 -60.30 -0.33 -9.81 16 15 C 0.53 9.69 7.85 -10.99 -0.09 9.61 16 16 O -0.52 -11.41 15.86 5.55 0.09 -11.32 16 17 C -0.15 -3.04 6.16 36.00 0.22 -2.82 16 18 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 16 19 C -0.53 -15.17 9.50 30.94 0.29 -14.87 16 20 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 21 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 22 N -0.87 -26.05 13.22 55.49 0.73 -25.31 16 23 Si 0.92 21.33 29.55 -169.99 -5.02 16.30 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 C 0.07 0.50 4.12 -3.53 -0.01 0.49 16 28 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.08 0.28 7.89 -51.93 -0.41 -0.13 16 30 H 0.08 0.28 7.84 -51.93 -0.41 -0.12 16 31 H 0.12 0.90 7.93 -52.49 -0.42 0.49 16 32 H 0.08 0.30 7.49 -51.93 -0.39 -0.09 16 33 H 0.07 0.33 7.90 -51.93 -0.41 -0.08 16 34 H 0.07 0.36 5.67 -51.93 -0.29 0.07 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.10 0.84 7.06 -51.93 -0.37 0.48 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.40 4.31 8.47 -40.82 -0.35 3.96 16 42 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 43 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 44 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 45 H 0.09 0.54 7.89 -51.93 -0.41 0.13 16 46 H 0.11 0.60 4.59 -51.93 -0.24 0.36 16 LS Contribution 391.35 15.07 5.90 5.90 Total: -1.00 -36.92 391.35 -8.63 -45.55 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -7.04 Total: -0.33 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: 0.06 Total: -0.57 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: -0.12 Total: -40.74 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -0.19 Total: -22.27 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.92 -8.63 -45.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001065027842.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.529 kcal (2) G-P(sol) polarization free energy of solvation -36.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds