Wall clock time and date at job start Wed Apr 1 2020 02:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47701 * 2 1 4 4 C 1.50703 * 109.47267 * 120.00191 * 2 1 3 5 5 O 1.21282 * 119.99675 * 359.97438 * 4 2 1 6 6 N 1.34777 * 120.00359 * 179.97438 * 4 2 1 7 7 C 1.47673 * 134.45627 * 180.02562 * 6 4 2 8 8 C 1.53441 * 85.97729 * 155.74587 * 7 6 4 9 9 C 1.47662 * 134.45559 * 0.06129 * 6 4 2 10 10 C 1.52900 * 113.55533 * 137.63479 * 8 7 6 11 11 N 1.47340 * 108.04656 * 179.97438 * 10 8 7 12 12 C 1.34777 * 121.04937 * 131.57983 * 11 10 8 13 13 O 1.21283 * 120.00463 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.99675 * 179.72576 * 12 11 10 15 15 S 1.80997 * 109.47151 * 180.27780 * 14 12 11 16 16 C 1.76196 * 100.00314 * 179.97438 * 15 14 12 17 17 H 1.08005 * 120.00018 * 0.02562 * 16 15 14 18 18 C 1.38799 * 120.00626 * 179.97438 * 16 15 14 19 19 N 1.31633 * 119.99674 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00584 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46793 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47282 * 119.99523 * 20 18 16 23 23 H 1.48500 * 109.47237 * 240.00020 * 20 18 16 24 24 C 1.47122 * 117.89335 * 311.85960 * 11 10 8 25 25 C 1.52796 * 108.95677 * 51.92654 * 24 11 10 26 26 O 1.42481 * 113.81016 * 268.76083 * 8 7 6 27 27 H 1.09002 * 109.47061 * 300.00312 * 1 2 3 28 28 H 1.09009 * 109.46877 * 59.99689 * 1 2 3 29 29 H 1.08988 * 109.47701 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47061 * 239.99688 * 2 1 3 31 31 H 1.08999 * 109.47158 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47289 * 299.99912 * 3 2 1 33 33 H 1.09002 * 109.47118 * 59.99723 * 3 2 1 34 34 H 1.08989 * 113.79199 * 41.47564 * 7 6 4 35 35 H 1.09001 * 113.89498 * 270.02606 * 7 6 4 36 36 H 1.09000 * 113.79705 * 89.98618 * 9 6 4 37 37 H 1.09003 * 113.79447 * 318.51306 * 9 6 4 38 38 H 1.09001 * 109.74539 * 60.31741 * 10 8 7 39 39 H 1.08994 * 109.74296 * 299.59238 * 10 8 7 40 40 H 1.09009 * 109.47352 * 300.27556 * 14 12 11 41 41 H 1.08998 * 109.47585 * 60.27844 * 14 12 11 42 42 H 0.97003 * 120.00297 * 179.97438 * 19 18 16 43 43 H 1.09002 * 109.59655 * 171.75576 * 24 11 10 44 44 H 1.09000 * 109.59058 * 292.20832 * 24 11 10 45 45 H 1.09003 * 109.56300 * 186.05162 * 25 24 11 46 46 H 1.08996 * 109.37597 * 66.02984 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 1.2442 -1.1710 2.0290 6 7 3.3574 -0.8341 1.4435 7 6 4.1816 -1.4473 2.5043 8 6 5.2792 -1.5577 1.4379 9 6 4.5667 -0.4100 0.7100 10 6 6.6701 -1.1842 1.9516 11 7 7.6231 -1.3325 0.8377 12 6 8.5073 -0.3583 0.5451 13 8 8.5274 0.6602 1.2032 14 6 9.4756 -0.5376 -0.5957 15 16 10.5285 0.9286 -0.7294 16 6 11.5327 0.4603 -2.0994 17 1 11.3817 -0.4962 -2.5776 18 6 12.5171 1.3211 -2.5647 19 7 12.7001 2.4876 -1.9828 20 14 13.5812 0.8250 -4.0175 21 1 13.1775 -0.5242 -4.4889 22 1 13.4061 1.8070 -5.1176 23 1 15.0063 0.7973 -3.6008 24 6 7.5746 -2.5749 0.0512 25 6 6.1381 -2.8138 -0.4114 26 8 5.2633 -2.7892 0.7214 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0275 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1301 1.4424 -0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.8067 -2.4103 2.8510 35 1 4.4279 -0.7679 3.3203 36 1 4.9270 0.5796 0.9909 37 1 4.4981 -0.5491 -0.3689 38 1 6.9516 -1.8487 2.7685 39 1 6.6688 -0.1514 2.2999 40 1 10.0960 -1.4148 -0.4114 41 1 8.9217 -0.6730 -1.5246 42 1 13.3883 3.0891 -2.3077 43 1 8.2267 -2.4833 -0.8175 44 1 7.9007 -3.4116 0.6691 45 1 6.0696 -3.7845 -0.9027 46 1 5.8487 -2.0305 -1.1118 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001068314958.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:31 Heat of formation + Delta-G solvation = -96.676502 kcal Electronic energy + Delta-G solvation = -28159.194400 eV Core-core repulsion = 24175.815137 eV Total energy + Delta-G solvation = -3983.379263 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.31858 -40.81443 -39.73874 -37.80949 -35.83047 -35.49564 -34.56449 -32.58622 -30.93213 -29.60287 -28.20396 -27.73083 -27.44747 -26.97495 -24.67339 -23.63182 -21.41980 -20.44539 -19.94901 -19.57209 -18.34553 -18.20442 -17.88388 -17.23303 -16.98280 -16.86121 -16.49919 -16.40454 -15.94986 -15.81384 -15.57791 -15.30219 -14.87247 -14.65508 -14.51410 -14.26556 -14.13640 -13.72220 -13.50929 -13.44374 -13.31016 -13.20242 -13.11443 -12.91329 -12.86421 -12.77371 -12.57981 -12.28421 -12.12688 -12.05703 -11.77773 -11.67684 -11.21797 -11.14327 -10.92658 -10.77190 -10.23334 -9.93253 -9.59331 -8.64525 -8.33321 -6.10577 1.24756 1.42691 1.45778 1.49334 1.54115 1.57225 1.68240 1.97810 2.28420 2.34661 3.01501 3.12105 3.24839 3.27940 3.48110 3.69734 3.79368 3.90528 3.96599 3.99247 4.09141 4.22184 4.24881 4.27570 4.33136 4.40115 4.44256 4.48570 4.54421 4.56871 4.66530 4.66904 4.71818 4.79063 4.80529 4.87618 4.90175 5.02550 5.20990 5.27588 5.34452 5.44442 6.01515 6.18081 6.22128 6.52013 7.01446 7.08457 7.09108 8.75861 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.017624 B = 0.002420 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.321472 B =11566.390233 C =12086.788407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.107 4.107 3 C -0.142 4.142 4 C 0.535 3.465 5 O -0.586 6.586 6 N -0.639 5.639 7 C 0.122 3.878 8 C 0.079 3.921 9 C 0.085 3.915 10 C 0.102 3.898 11 N -0.611 5.611 12 C 0.540 3.460 13 O -0.558 6.558 14 C -0.126 4.126 15 S -0.150 6.150 16 C -0.542 4.542 17 H 0.084 0.916 18 C 0.013 3.987 19 N -0.911 5.911 20 Si 0.996 3.004 21 H -0.255 1.255 22 H -0.275 1.275 23 H -0.277 1.277 24 C 0.067 3.933 25 C 0.046 3.954 26 O -0.356 6.356 27 H 0.049 0.951 28 H 0.086 0.914 29 H 0.050 0.950 30 H 0.110 0.890 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.053 0.947 34 H 0.090 0.910 35 H 0.121 0.879 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.108 0.892 41 H 0.112 0.888 42 H 0.270 0.730 43 H 0.109 0.891 44 H 0.095 0.905 45 H 0.139 0.861 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.919 -11.399 1.701 22.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.128 4.128 3 C -0.200 4.200 4 C 0.327 3.673 5 O -0.466 6.466 6 N -0.374 5.374 7 C 0.000 4.000 8 C 0.037 3.963 9 C -0.038 4.038 10 C -0.021 4.021 11 N -0.346 5.346 12 C 0.328 3.672 13 O -0.435 6.435 14 C -0.277 4.277 15 S 0.077 5.923 16 C -0.690 4.690 17 H 0.102 0.898 18 C -0.191 4.191 19 N -0.548 5.548 20 Si 0.818 3.182 21 H -0.179 1.179 22 H -0.201 1.201 23 H -0.202 1.202 24 C -0.055 4.055 25 C -0.031 4.031 26 O -0.274 6.274 27 H 0.068 0.932 28 H 0.105 0.895 29 H 0.069 0.931 30 H 0.128 0.872 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.072 0.928 34 H 0.109 0.891 35 H 0.139 0.861 36 H 0.121 0.879 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.117 0.883 40 H 0.126 0.874 41 H 0.130 0.870 42 H 0.079 0.921 43 H 0.127 0.873 44 H 0.113 0.887 45 H 0.156 0.844 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.553 -10.133 3.110 22.241 hybrid contribution 0.980 -0.871 -1.323 1.862 sum -18.573 -11.004 1.787 21.662 Atomic orbital electron populations 1.21608 0.92155 1.02249 1.02693 1.21310 0.98351 0.97794 0.95337 1.21813 1.01506 0.93130 1.03540 1.20991 0.79832 0.78425 0.88086 1.90670 1.55145 1.51285 1.49502 1.49961 1.03928 1.57210 1.26266 1.23262 0.85251 0.99904 0.91633 1.22890 0.93450 0.85947 0.94010 1.23920 0.81245 0.99123 0.99519 1.22123 0.86157 1.04408 0.89460 1.48112 1.35147 1.18086 1.33249 1.20068 0.80597 0.82376 0.84142 1.90697 1.70882 1.29552 1.52408 1.23378 1.00000 1.04121 1.00158 1.85607 1.40567 1.22301 1.43792 1.23218 1.21373 1.06806 1.17572 0.89775 1.26093 0.98160 0.94345 1.00544 1.70184 1.33126 1.09562 1.41939 0.84941 0.77380 0.78897 0.76968 1.17854 1.20088 1.20227 1.22602 0.99284 0.85950 0.97670 1.23166 0.87365 1.05101 0.87422 1.87980 1.64326 1.32266 1.42844 0.93219 0.89514 0.93093 0.87177 0.92029 0.89394 0.92815 0.89145 0.86116 0.87873 0.88488 0.88585 0.88333 0.87392 0.87016 0.92073 0.87326 0.88658 0.84368 0.92027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 8.48 71.98 0.61 -1.46 16 2 C -0.11 -1.76 3.09 -11.54 -0.04 -1.79 16 3 C -0.14 -1.97 9.07 71.98 0.65 -1.32 16 4 C 0.54 12.42 7.38 87.66 0.65 13.07 16 5 O -0.59 -18.26 16.71 -3.03 -0.05 -18.31 16 6 N -0.64 -12.54 3.57 -849.17 -3.03 -15.57 16 7 C 0.12 2.05 8.23 86.30 0.71 2.76 16 8 C 0.08 1.30 1.21 -10.49 -0.01 1.29 16 9 C 0.08 1.39 6.03 86.30 0.52 1.91 16 10 C 0.10 1.90 5.78 86.19 0.50 2.40 16 11 N -0.61 -13.55 3.03 -818.66 -2.48 -16.04 16 12 C 0.54 17.69 7.73 87.66 0.68 18.37 16 13 O -0.56 -23.19 15.36 -3.04 -0.05 -23.24 16 14 C -0.13 -4.46 4.53 71.24 0.32 -4.14 16 15 S -0.15 -7.84 20.57 -56.49 -1.16 -9.00 16 16 C -0.54 -29.35 9.50 67.95 0.65 -28.70 16 17 H 0.08 4.20 7.80 -2.91 -0.02 4.17 16 18 C 0.01 0.73 5.49 84.86 0.47 1.20 16 19 N -0.91 -54.28 13.22 21.65 0.29 -54.00 16 20 Si 1.00 41.88 29.55 68.60 2.03 43.91 16 21 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 22 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 23 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 24 C 0.07 1.00 6.47 86.19 0.56 1.56 16 25 C 0.05 0.57 6.87 71.91 0.49 1.07 16 26 O -0.36 -6.00 10.52 -148.98 -1.57 -7.57 16 27 H 0.05 0.91 8.10 -2.39 -0.02 0.89 16 28 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 29 H 0.05 0.92 8.10 -2.39 -0.02 0.90 16 30 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.06 0.86 6.12 -2.39 -0.01 0.84 16 32 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.12 1.60 8.09 -2.39 -0.02 1.58 16 36 H 0.10 1.71 7.75 -2.39 -0.02 1.69 16 37 H 0.10 1.43 7.27 -2.39 -0.02 1.42 16 38 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.10 2.11 6.91 -2.39 -0.02 2.09 16 40 H 0.11 3.47 8.00 -2.39 -0.02 3.45 16 41 H 0.11 3.47 7.68 -2.40 -0.02 3.45 16 42 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 43 H 0.11 1.52 6.03 -2.39 -0.01 1.50 16 44 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.14 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.06 0.77 7.19 -2.39 -0.02 0.75 16 Total: -1.00 -79.49 386.22 1.71 -77.79 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: 0.98 Total: 15.82 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: 6.76 Total: 6.21 kcal Atomic # 7 Polarization: -80.38 SS G_CDS: -5.23 Total: -85.60 kcal Atomic # 8 Polarization: -47.46 SS G_CDS: -1.66 Total: -49.12 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Atomic # 16 Polarization: -7.84 SS G_CDS: -1.16 Total: -9.00 kcal Total: -79.49 1.71 -77.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001068314958.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.890 kcal (2) G-P(sol) polarization free energy of solvation -79.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds