Wall clock time and date at job start Wed Apr 1 2020 02:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47291 * 2 1 4 4 C 1.50706 * 109.46859 * 120.00218 * 2 1 3 5 5 O 1.21283 * 119.99503 * 239.99651 * 4 2 1 6 6 N 1.34773 * 120.00081 * 59.72378 * 4 2 1 7 7 C 1.47206 * 135.97485 * 359.62746 * 6 4 2 8 8 C 1.52977 * 87.69179 * 153.61893 * 7 6 4 9 9 C 1.47217 * 135.96855 * 180.02562 * 6 4 2 10 10 C 1.53666 * 115.11699 * 140.90153 * 8 7 6 11 11 C 1.55483 * 101.96659 * 111.47428 * 10 8 7 12 12 H 1.09003 * 111.10229 * 151.43529 * 11 10 8 13 13 N 1.46501 * 111.14055 * 275.52587 * 11 10 8 14 14 C 1.34779 * 119.99711 * 198.13416 * 13 11 10 15 15 O 1.21286 * 120.00154 * 0.02562 * 14 13 11 16 16 C 1.50700 * 119.99962 * 180.02562 * 14 13 11 17 17 S 1.81002 * 109.47156 * 180.02562 * 16 14 13 18 18 C 1.76201 * 99.99849 * 179.97438 * 17 16 14 19 19 H 1.08004 * 119.99936 * 359.97438 * 18 17 16 20 20 C 1.38796 * 120.00058 * 179.97438 * 18 17 16 21 21 N 1.31626 * 120.00355 * 179.97438 * 20 18 17 22 22 Si 1.86806 * 119.99772 * 359.97438 * 20 18 17 23 23 H 1.48505 * 109.46845 * 90.00646 * 22 20 18 24 24 H 1.48504 * 109.47216 * 209.99984 * 22 20 18 25 25 H 1.48496 * 109.47597 * 330.00557 * 22 20 18 26 26 C 1.55013 * 101.04775 * 33.49006 * 11 10 8 27 27 O 1.42396 * 116.32046 * 269.47236 * 8 7 6 28 28 H 1.08996 * 109.47350 * 300.00373 * 1 2 3 29 29 H 1.09002 * 109.46917 * 59.99921 * 1 2 3 30 30 H 1.08995 * 109.47505 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47000 * 239.99299 * 2 1 3 32 32 H 1.09002 * 109.46857 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47200 * 299.99345 * 3 2 1 34 34 H 1.09000 * 109.46986 * 60.00008 * 3 2 1 35 35 H 1.09008 * 113.49929 * 268.30165 * 7 6 4 36 36 H 1.08999 * 113.50090 * 38.84023 * 7 6 4 37 37 H 1.08997 * 113.49603 * 321.15390 * 9 6 4 38 38 H 1.09000 * 113.50066 * 91.70247 * 9 6 4 39 39 H 1.09000 * 110.92634 * 229.64742 * 10 8 7 40 40 H 1.08999 * 110.93051 * 353.30590 * 10 8 7 41 41 H 0.96992 * 119.99951 * 18.13796 * 13 11 10 42 42 H 1.09007 * 109.46963 * 300.00329 * 16 14 13 43 43 H 1.08996 * 109.47110 * 59.99768 * 16 14 13 44 44 H 0.97004 * 119.99971 * 179.97438 * 21 20 18 45 45 H 1.08995 * 110.30396 * 205.04259 * 26 11 10 46 46 H 1.08999 * 110.38070 * 82.93664 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.7296 -0.1211 2.0288 6 7 1.7021 -1.9992 1.4466 7 6 0.8989 -3.0171 0.7497 8 6 1.7734 -4.0776 1.4211 9 6 1.9809 -3.0032 2.4865 10 6 1.0269 -5.3346 1.8943 11 6 1.5762 -6.4196 0.9255 12 1 1.5645 -7.4046 1.3922 13 7 0.8307 -6.4282 -0.3356 14 6 0.8937 -7.5015 -1.1483 15 8 1.5672 -8.4605 -0.8354 16 6 0.1274 -7.5101 -2.4459 17 16 0.4131 -9.0775 -3.3050 18 6 -0.5720 -8.8220 -4.7434 19 1 -1.1164 -7.8975 -4.8678 20 6 -0.6485 -9.8088 -5.7164 21 7 -1.3847 -9.6181 -6.7907 22 14 0.2936 -11.4075 -5.5014 23 1 -0.5591 -12.3925 -4.7887 24 1 0.6643 -11.9468 -6.8345 25 1 1.5245 -11.1542 -4.7102 26 6 3.0280 -5.9200 0.7125 27 8 2.9350 -4.4840 0.7048 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 -0.1422 -3.0448 1.0718 36 1 1.0050 -2.9871 -0.3347 37 1 3.0008 -2.9613 2.8686 38 1 1.2332 -3.0271 3.2792 39 1 1.2793 -5.5715 2.9279 40 1 -0.0501 -5.2157 1.7755 41 1 0.2919 -5.6614 -0.5857 42 1 -0.9371 -7.3978 -2.2399 43 1 0.4651 -6.6849 -3.0728 44 1 -1.4378 -10.3077 -7.4709 45 1 3.4155 -6.2790 -0.2409 46 1 3.6679 -6.2532 1.5296 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001068710927.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:22 Heat of formation + Delta-G solvation = -79.161071 kcal Electronic energy + Delta-G solvation = -27584.663195 eV Core-core repulsion = 23602.043458 eV Total energy + Delta-G solvation = -3982.619737 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.63501 -39.87702 -38.94569 -37.14424 -34.80423 -34.55158 -32.48835 -31.66350 -30.28538 -28.64110 -27.59787 -26.64497 -26.41231 -25.66296 -23.22205 -22.21509 -20.83463 -20.40364 -19.18296 -18.00567 -17.52199 -17.26510 -16.65359 -16.53861 -16.11292 -15.60390 -15.52429 -15.07224 -15.01965 -14.82135 -14.48353 -14.11294 -13.89100 -13.63574 -13.46867 -13.30861 -13.00901 -12.84954 -12.76836 -12.66516 -12.47524 -12.21599 -12.12026 -11.86595 -11.69854 -11.50639 -11.47947 -11.37057 -11.30615 -11.05230 -10.66865 -10.04674 -9.95186 -9.90313 -9.66393 -9.18380 -9.12152 -9.04360 -8.56946 -6.98053 -6.33633 -4.06106 2.29864 2.40199 2.63820 2.78293 3.13819 3.20375 3.29240 3.46135 3.55287 3.67598 3.92887 4.01336 4.13535 4.28393 4.47518 4.54339 4.57415 4.64413 4.77551 4.85000 4.92121 4.93728 5.00706 5.05524 5.06874 5.13080 5.15398 5.21714 5.24810 5.28760 5.30958 5.37524 5.46672 5.54041 5.60546 5.62050 5.67160 5.74160 5.90522 5.92357 6.33500 6.60816 7.32648 7.41488 7.83127 7.89272 8.31678 8.36662 9.12403 10.75533 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.016415 B = 0.002287 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.333694 B =12242.251557 C =13442.622247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.110 4.110 3 C -0.133 4.133 4 C 0.549 3.451 5 O -0.541 6.541 6 N -0.639 5.639 7 C 0.091 3.909 8 C 0.072 3.928 9 C 0.097 3.903 10 C -0.143 4.143 11 C 0.116 3.884 12 H 0.112 0.888 13 N -0.726 5.726 14 C 0.534 3.466 15 O -0.516 6.516 16 C -0.125 4.125 17 S -0.140 6.140 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.879 5.879 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.037 3.963 27 O -0.340 6.340 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.098 0.902 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.400 0.600 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.271 0.729 45 H 0.097 0.903 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.378 16.683 18.702 25.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.131 4.131 3 C -0.190 4.190 4 C 0.340 3.660 5 O -0.417 6.417 6 N -0.375 5.375 7 C -0.033 4.033 8 C 0.030 3.970 9 C -0.026 4.026 10 C -0.181 4.181 11 C 0.010 3.990 12 H 0.130 0.870 13 N -0.380 5.380 14 C 0.320 3.680 15 O -0.390 6.390 16 C -0.275 4.275 17 S 0.086 5.914 18 C -0.670 4.670 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.516 5.516 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.041 4.041 27 O -0.258 6.258 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.116 0.884 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.118 0.882 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.114 0.886 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.234 0.766 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.081 0.919 45 H 0.116 0.884 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.030 15.718 19.326 25.235 hybrid contribution -0.964 0.595 -0.636 1.299 sum 3.067 16.313 18.690 24.997 Atomic orbital electron populations 1.21813 0.92787 1.02618 1.02998 1.21258 0.97682 0.97812 0.96366 1.21624 1.01887 0.93331 1.02172 1.20316 0.79502 0.78614 0.87591 1.90704 1.38634 1.64461 1.47926 1.49451 1.51553 1.09950 1.26500 1.23543 0.95768 0.83837 1.00104 1.22769 0.87684 0.93415 0.93096 1.23331 1.03273 0.83578 0.92427 1.23205 1.01715 0.92606 1.00619 1.22466 0.90933 1.00612 0.84999 0.86977 1.45874 1.51301 1.19920 1.20955 1.20338 0.81059 0.81728 0.84860 1.90714 1.40329 1.34071 1.73881 1.23281 1.02878 1.05451 0.95927 1.84807 1.65679 1.18044 1.22893 1.22299 1.32873 1.07509 1.04295 0.89358 1.24715 0.94364 0.98331 0.93899 1.69933 1.38070 1.34826 1.08755 0.86739 0.82537 0.83689 0.78902 1.19198 1.19914 1.15926 1.24079 0.96763 0.79590 1.03626 1.88401 1.41923 1.21853 1.73661 0.92175 0.91111 0.92064 0.88369 0.91906 0.91791 0.91981 0.88187 0.89187 0.89591 0.88561 0.87903 0.88323 0.76586 0.88400 0.88353 0.91892 0.88440 0.90657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 9.07 37.16 0.34 -0.52 16 2 C -0.11 -0.88 3.14 -91.77 -0.29 -1.17 16 3 C -0.13 -1.05 8.48 37.16 0.32 -0.74 16 4 C 0.55 6.07 7.41 -10.98 -0.08 5.99 16 5 O -0.54 -8.05 16.76 5.56 0.09 -7.96 16 6 N -0.64 -5.73 3.64 -185.04 -0.67 -6.40 16 7 C 0.09 0.55 6.19 -7.92 -0.05 0.50 16 8 C 0.07 0.50 1.75 -90.43 -0.16 0.34 16 9 C 0.10 0.72 8.14 -8.05 -0.07 0.66 16 10 C -0.14 -0.72 5.97 -25.07 -0.15 -0.87 16 11 C 0.12 0.98 3.37 -65.55 -0.22 0.76 16 12 H 0.11 1.05 7.74 -51.93 -0.40 0.65 16 13 N -0.73 -7.43 5.24 -51.50 -0.27 -7.70 16 14 C 0.53 8.30 7.85 -10.98 -0.09 8.21 16 15 O -0.52 -9.95 15.61 5.55 0.09 -9.87 16 16 C -0.12 -2.20 6.16 36.01 0.22 -1.98 16 17 S -0.14 -3.39 18.55 -107.50 -1.99 -5.39 16 18 C -0.52 -14.55 10.04 30.94 0.31 -14.24 16 19 H 0.09 2.56 8.03 -52.48 -0.42 2.14 16 20 C 0.10 2.73 5.50 -17.43 -0.10 2.64 16 21 N -0.88 -25.99 13.97 55.49 0.78 -25.21 16 22 Si 0.86 21.25 27.74 -169.99 -4.71 16.53 16 23 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.24 -5.81 6.74 56.52 0.38 -5.43 16 26 C 0.04 0.35 7.49 38.22 0.29 0.64 16 27 O -0.34 -3.45 11.18 -35.23 -0.39 -3.85 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.32 6.28 -51.93 -0.33 -0.01 16 31 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 35 H 0.10 0.35 7.88 -51.92 -0.41 -0.06 16 36 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.10 0.49 8.13 -51.93 -0.42 0.07 16 39 H 0.10 0.36 8.13 -51.93 -0.42 -0.07 16 40 H 0.10 0.34 7.81 -51.93 -0.41 -0.07 16 41 H 0.40 3.05 8.62 -40.82 -0.35 2.70 16 42 H 0.10 1.58 8.14 -51.91 -0.42 1.16 16 43 H 0.10 1.62 8.14 -51.92 -0.42 1.20 16 44 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 46 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 392.73 15.07 5.92 5.92 Total: -1.00 -36.59 392.73 -8.28 -44.87 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -7.38 Total: -1.15 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: 0.28 Total: 0.22 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: -0.17 Total: -39.32 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.21 Total: -21.67 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.71 Total: 16.53 kcal Atomic # 16 Polarization: -3.39 SS G_CDS: -1.99 Total: -5.39 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.59 -8.28 -44.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001068710927.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.295 kcal (2) G-P(sol) polarization free energy of solvation -36.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds