Wall clock time and date at job start Wed Apr 1 2020 02:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32989 * 119.99945 * 2 1 4 4 C 1.50705 * 119.99944 * 180.02562 * 3 2 1 5 5 C 1.47102 * 120.00255 * 0.02562 * 3 2 1 6 6 O 1.21623 * 119.99871 * 0.02562 * 5 3 2 7 7 N 1.34775 * 120.00644 * 180.02562 * 5 3 2 8 8 C 1.46491 * 120.00353 * 179.97438 * 7 5 3 9 9 C 1.53005 * 109.47128 * 180.02562 * 8 7 5 10 10 H 1.09002 * 110.88491 * 57.42931 * 9 8 7 11 11 C 1.54907 * 111.00242 * 293.54827 * 9 8 7 12 12 N 1.47427 * 104.82893 * 204.87686 * 11 9 8 13 13 C 1.34774 * 125.64593 * 204.09236 * 12 11 9 14 14 O 1.21279 * 120.00472 * 0.02562 * 13 12 11 15 15 C 1.50706 * 120.00020 * 180.02562 * 13 12 11 16 16 S 1.81002 * 109.47200 * 179.97438 * 15 13 12 17 17 C 1.76198 * 99.99878 * 179.97438 * 16 15 13 18 18 H 1.08006 * 120.00031 * 359.97438 * 17 16 15 19 19 C 1.38801 * 120.00096 * 180.02562 * 17 16 15 20 20 N 1.31631 * 119.99737 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99933 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47767 * 59.99657 * 21 19 17 23 23 H 1.48505 * 109.46944 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46958 * 299.99344 * 21 19 17 25 25 C 1.47015 * 108.70373 * 24.35704 * 12 11 9 26 26 C 1.54334 * 107.26695 * 358.58591 * 25 12 11 27 27 H 1.08996 * 111.00157 * 219.60247 * 26 25 12 28 28 O 1.42894 * 110.51692 * 96.45118 * 26 25 12 29 29 H 1.08999 * 109.47101 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46836 * 299.99710 * 1 2 3 31 31 H 1.08999 * 109.47460 * 60.00317 * 1 2 3 32 32 H 1.08006 * 119.99931 * 179.97438 * 2 1 3 33 33 H 1.09005 * 109.46287 * 269.99540 * 4 3 2 34 34 H 1.08992 * 109.47042 * 29.99890 * 4 3 2 35 35 H 1.09000 * 109.46881 * 149.99947 * 4 3 2 36 36 H 0.97007 * 119.98996 * 0.02562 * 7 5 3 37 37 H 1.09001 * 109.46855 * 60.00276 * 8 7 5 38 38 H 1.08997 * 109.47398 * 299.99809 * 8 7 5 39 39 H 1.09001 * 110.36611 * 86.04525 * 11 9 8 40 40 H 1.08996 * 110.45938 * 323.76230 * 11 9 8 41 41 H 1.09001 * 109.46953 * 299.99667 * 15 13 12 42 42 H 1.09000 * 109.47318 * 59.99264 * 15 13 12 43 43 H 0.97001 * 119.99701 * 180.02562 * 20 19 17 44 44 H 1.09002 * 109.88580 * 118.12991 * 25 12 11 45 45 H 1.09000 * 109.88722 * 239.29342 * 25 12 11 46 46 H 0.96705 * 114.00206 * 66.50401 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6790 1.1517 -0.0006 5 6 1.4365 2.4257 0.0006 6 8 0.2203 2.4257 0.0015 7 7 2.1103 3.5929 0.0000 8 6 1.3778 4.8616 0.0000 9 6 2.3721 6.0246 -0.0012 10 1 3.0406 5.9633 -0.8600 11 6 3.1730 6.0717 1.3238 12 7 3.5939 7.4780 1.4605 13 6 4.6534 7.9154 2.1694 14 8 5.3536 7.1239 2.7644 15 6 4.9681 9.3883 2.2228 16 16 6.4369 9.6547 3.2464 17 6 6.5721 11.4081 3.1370 18 1 5.8556 11.9698 2.5559 19 6 7.5999 12.0675 3.7969 20 7 8.4733 11.3829 4.5048 21 14 7.7427 13.9264 3.6815 22 1 6.5095 14.5523 4.2225 23 1 8.9156 14.3826 4.4700 24 1 7.9165 14.3222 2.2608 25 6 2.6627 8.3247 0.7007 26 6 1.6336 7.3887 0.0324 27 1 1.3979 7.7246 -0.9774 28 8 0.4472 7.3020 0.8242 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 2.0471 -0.9354 0.0004 33 1 4.0426 1.1516 1.0270 34 1 4.0421 0.2619 -0.5147 35 1 4.0421 2.0418 -0.5144 36 1 3.0804 3.5928 -0.0011 37 1 0.7515 4.9195 0.8903 38 1 0.7508 4.9192 -0.8897 39 1 4.0441 5.4192 1.2640 40 1 2.5398 5.7820 2.1623 41 1 5.1560 9.7565 1.2142 42 1 4.1230 9.9251 2.6539 43 1 9.1914 11.8437 4.9662 44 1 2.1557 9.0155 1.3744 45 1 3.2062 8.8807 -0.0632 46 1 -0.0515 8.1288 0.8774 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081393016.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:30 Heat of formation + Delta-G solvation = -104.695737 kcal Electronic energy + Delta-G solvation = -27070.410286 eV Core-core repulsion = 23086.683283 eV Total energy + Delta-G solvation = -3983.727003 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.53494 -39.86715 -38.10514 -35.83310 -35.29007 -34.95343 -32.46183 -32.00561 -30.29361 -29.25143 -28.81364 -26.12295 -25.48165 -25.07958 -23.43684 -22.08185 -20.91592 -19.69481 -19.28926 -18.17995 -17.53613 -16.76095 -16.51413 -16.07709 -15.74175 -15.68018 -15.10850 -14.83432 -14.72595 -14.62036 -14.41344 -14.09887 -13.91155 -13.63212 -13.45687 -13.20840 -13.01336 -12.90056 -12.71033 -12.51549 -12.42760 -12.26169 -12.01626 -11.84454 -11.78457 -11.47607 -11.15386 -11.07629 -11.06657 -10.79959 -10.54471 -9.86104 -9.80260 -9.52634 -9.45852 -9.13334 -9.09087 -8.60087 -8.28107 -6.54243 -6.24631 -3.95865 1.09735 2.81776 2.90645 2.99031 3.02496 3.20811 3.22537 3.26539 3.54484 3.68522 4.10848 4.16539 4.19035 4.41269 4.45018 4.51447 4.83386 4.86376 4.89074 4.98213 5.04389 5.09248 5.10392 5.24432 5.30837 5.35516 5.36546 5.49097 5.55530 5.56500 5.58377 5.60305 5.69582 5.79980 5.84544 5.89846 6.07375 6.10782 6.21029 6.24170 6.29975 7.22878 7.27552 7.55274 7.57471 7.99405 8.31572 8.48008 9.20351 10.82734 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.022573 B = 0.001986 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.139260 B =14097.862666 C =15082.175055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.069 4.069 3 C -0.198 4.198 4 C -0.116 4.116 5 C 0.550 3.450 6 O -0.538 6.538 7 N -0.730 5.730 8 C 0.141 3.859 9 C -0.110 4.110 10 H 0.103 0.897 11 C 0.116 3.884 12 N -0.623 5.623 13 C 0.549 3.451 14 O -0.513 6.513 15 C -0.147 4.147 16 S -0.059 6.059 17 C -0.537 4.537 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.282 1.282 24 H -0.274 1.274 25 C 0.073 3.927 26 C 0.103 3.897 27 H 0.083 0.917 28 O -0.554 6.554 29 H 0.051 0.949 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.124 0.876 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.401 0.599 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.269 0.731 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.107 -16.456 -13.962 26.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.089 4.089 3 C -0.201 4.201 4 C -0.173 4.173 5 C 0.340 3.660 6 O -0.417 6.417 7 N -0.383 5.383 8 C 0.017 3.983 9 C -0.129 4.129 10 H 0.121 0.879 11 C -0.007 4.007 12 N -0.361 5.361 13 C 0.337 3.663 14 O -0.387 6.387 15 C -0.297 4.297 16 S 0.167 5.833 17 C -0.685 4.685 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.052 4.052 26 C 0.043 3.957 27 H 0.101 0.899 28 O -0.360 6.360 29 H 0.070 0.930 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.142 0.858 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.236 0.764 37 H 0.102 0.898 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -15.480 -18.172 -12.823 27.098 hybrid contribution -0.279 2.871 -0.844 3.006 sum -15.760 -15.300 -13.667 25.870 Atomic orbital electron populations 1.21032 0.91724 1.00951 1.04157 1.23642 0.97261 0.96688 0.91300 1.21476 0.96467 0.93136 1.09048 1.20786 0.90777 1.02927 1.02806 1.18392 0.87224 0.84043 0.76361 1.90793 1.13534 1.87605 1.49749 1.46020 1.10559 1.05828 1.75854 1.21071 0.93461 0.80171 1.03610 1.22742 0.97022 0.93795 0.99336 0.87926 1.22184 0.98446 0.83987 0.96099 1.48400 1.28585 1.07282 1.51852 1.20047 0.78264 0.90733 0.77224 1.90714 1.48125 1.56943 1.42942 1.23511 1.06600 0.93633 1.05995 1.85413 1.27469 1.08535 1.61864 1.22811 1.16779 0.91736 1.37155 0.90994 1.24994 0.94686 0.99397 0.94475 1.70007 1.14443 1.36104 1.29658 0.86219 0.77846 0.83044 0.78355 1.19935 1.20769 1.19939 1.22789 0.91906 0.94327 0.96133 1.22695 0.84829 0.94248 0.93949 0.89881 1.86524 1.37145 1.39259 1.73103 0.93045 0.90073 0.90138 0.85829 0.90803 0.91101 0.91742 0.76389 0.89806 0.91023 0.90406 0.90989 0.89329 0.89344 0.92086 0.90484 0.90389 0.76768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 8.45 36.01 0.30 -0.72 16 2 C -0.07 -0.52 9.95 -36.13 -0.36 -0.88 16 3 C -0.20 -1.64 6.00 -102.85 -0.62 -2.26 16 4 C -0.12 -0.69 9.61 36.01 0.35 -0.34 16 5 C 0.55 5.79 7.72 -12.67 -0.10 5.69 16 6 O -0.54 -7.20 13.07 5.26 0.07 -7.13 16 7 N -0.73 -6.35 5.35 -61.49 -0.33 -6.68 16 8 C 0.14 1.26 4.74 -4.04 -0.02 1.24 16 9 C -0.11 -0.89 3.03 -88.47 -0.27 -1.16 16 10 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 11 C 0.12 1.35 6.07 -2.53 -0.02 1.33 16 12 N -0.62 -8.65 3.33 -170.52 -0.57 -9.21 16 13 C 0.55 10.41 7.87 -10.98 -0.09 10.33 16 14 O -0.51 -11.76 16.12 5.56 0.09 -11.67 16 15 C -0.15 -2.96 5.35 36.01 0.19 -2.77 16 16 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 17 C -0.54 -15.14 9.50 30.94 0.29 -14.84 16 18 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 19 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -25.96 13.22 55.49 0.73 -25.23 16 21 Si 0.92 21.17 29.55 -169.99 -5.02 16.14 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 23 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 25 C 0.07 0.70 6.25 -3.06 -0.02 0.68 16 26 C 0.10 0.75 4.09 -24.89 -0.10 0.65 16 27 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 28 O -0.55 -4.30 12.09 -35.23 -0.43 -4.73 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.81 7.22 -51.93 -0.37 0.44 16 31 H 0.08 0.77 7.22 -51.93 -0.38 0.40 16 32 H 0.12 0.62 8.06 -52.48 -0.42 0.20 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.34 8.07 -51.93 -0.42 -0.08 16 35 H 0.06 0.34 6.70 -51.93 -0.35 -0.01 16 36 H 0.40 2.80 6.44 -40.82 -0.26 2.54 16 37 H 0.08 0.93 7.43 -51.93 -0.39 0.55 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.93 8.04 -51.93 -0.42 0.51 16 40 H 0.07 0.92 8.01 -51.93 -0.42 0.50 16 41 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 42 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 43 H 0.27 7.50 8.31 -40.82 -0.34 7.17 16 44 H 0.08 0.72 8.07 -51.93 -0.42 0.30 16 45 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.38 1.47 9.12 45.56 0.42 1.89 16 LS Contribution 394.35 15.07 5.94 5.94 Total: -1.00 -37.30 394.35 -8.62 -45.92 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -6.35 Total: 1.52 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -0.54 Total: -1.05 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: -0.16 Total: -41.12 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.27 Total: -23.53 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -37.30 -8.62 -45.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081393016.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.779 kcal (2) G-P(sol) polarization free energy of solvation -37.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds