Wall clock time and date at job start Wed Apr 1 2020 02:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32995 * 119.99312 * 2 1 4 4 C 1.50709 * 119.99472 * 179.97438 * 3 2 1 5 5 C 1.47096 * 120.00589 * 359.97438 * 3 2 1 6 6 O 1.21619 * 119.99574 * 0.02562 * 5 3 2 7 7 N 1.34774 * 120.00220 * 179.97438 * 5 3 2 8 8 C 1.46499 * 120.00186 * 180.02562 * 7 5 3 9 9 C 1.53001 * 109.47538 * 180.02562 * 8 7 5 10 10 H 1.08997 * 110.30365 * 52.82406 * 9 8 7 11 11 C 1.54389 * 110.43001 * 290.59091 * 9 8 7 12 12 N 1.48139 * 104.61905 * 264.94805 * 11 9 8 13 13 C 1.34778 * 127.84147 * 140.41849 * 12 11 9 14 14 O 1.21281 * 119.99721 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.00112 * 180.02562 * 13 12 11 16 16 S 1.81005 * 109.46935 * 179.97438 * 15 13 12 17 17 C 1.76203 * 100.00005 * 179.97438 * 16 15 13 18 18 H 1.08005 * 120.00055 * 0.02562 * 17 16 15 19 19 C 1.38792 * 120.00316 * 180.02562 * 17 16 15 20 20 N 1.31634 * 119.99966 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00288 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47113 * 60.00194 * 21 19 17 23 23 H 1.48506 * 109.47209 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47090 * 299.99866 * 21 19 17 25 25 C 1.48314 * 104.39258 * 320.47433 * 12 11 9 26 26 C 1.54279 * 110.34406 * 175.00359 * 9 8 7 27 27 H 1.08998 * 110.34383 * 359.97438 * 26 9 8 28 28 O 1.42903 * 110.34216 * 237.84932 * 26 9 8 29 29 H 1.09001 * 109.46898 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47387 * 300.00004 * 1 2 3 31 31 H 1.09002 * 109.46957 * 60.00275 * 1 2 3 32 32 H 1.08000 * 120.00360 * 179.97438 * 2 1 3 33 33 H 1.08993 * 109.46876 * 269.99889 * 4 3 2 34 34 H 1.09000 * 109.46789 * 30.00089 * 4 3 2 35 35 H 1.09000 * 109.46640 * 150.00217 * 4 3 2 36 36 H 0.97000 * 119.99916 * 0.02562 * 7 5 3 37 37 H 1.09003 * 109.47351 * 60.00061 * 8 7 5 38 38 H 1.09000 * 109.47037 * 300.00311 * 8 7 5 39 39 H 1.09000 * 110.40648 * 23.73435 * 11 9 8 40 40 H 1.08996 * 110.40868 * 146.04269 * 11 9 8 41 41 H 1.08998 * 109.47262 * 299.99768 * 15 13 12 42 42 H 1.09000 * 109.47000 * 60.00448 * 15 13 12 43 43 H 0.96995 * 120.00238 * 179.97438 * 20 19 17 44 44 H 1.08994 * 110.38567 * 280.73557 * 25 12 11 45 45 H 1.08997 * 110.50890 * 158.24687 * 25 12 11 46 46 H 0.96700 * 114.00311 * 181.47520 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1718 1.1518 0.0000 4 6 3.6789 1.1519 0.0006 5 6 1.4363 2.4257 -0.0006 6 8 0.2202 2.4256 -0.0006 7 7 2.1102 3.5929 0.0000 8 6 1.3776 4.8616 0.0000 9 6 2.3718 6.0247 0.0000 10 1 3.0871 5.9108 -0.8146 11 6 3.1087 6.1037 1.3543 12 7 2.3362 7.0913 2.1432 13 6 2.0305 7.0445 3.4550 14 8 2.4019 6.1087 4.1312 15 6 1.2273 8.1551 4.0816 16 16 0.9833 7.8048 5.8406 17 6 0.0444 9.2209 6.3073 18 1 -0.2035 9.9711 5.5709 19 6 -0.3765 9.3724 7.6211 20 7 -0.0740 8.4584 8.5187 21 14 -1.3725 10.8734 8.1156 22 1 -2.6312 10.9135 7.3288 23 1 -1.6952 10.7984 9.5632 24 1 -0.5822 12.1019 7.8482 25 6 1.9735 8.1436 1.1630 26 6 1.6249 7.3687 -0.1260 27 1 0.5498 7.2004 -0.1884 28 8 2.0816 8.0850 -1.2751 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 2.0471 -0.9353 0.0004 33 1 4.0418 1.1522 1.0283 34 1 4.0424 0.2618 -0.5129 35 1 4.0424 2.0418 -0.5133 36 1 3.0802 3.5930 0.0003 37 1 0.7506 4.9192 0.8897 38 1 0.7513 4.9195 -0.8902 39 1 3.1006 5.1323 1.8487 40 1 4.1330 6.4473 1.2102 41 1 1.7620 9.0982 3.9694 42 1 0.2581 8.2257 3.5878 43 1 -0.3678 8.5645 9.4370 44 1 2.8193 8.8088 0.9896 45 1 1.1094 8.7090 1.5119 46 1 1.6627 8.9487 -1.3924 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081393018.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:40 Heat of formation + Delta-G solvation = -102.661816 kcal Electronic energy + Delta-G solvation = -27382.706625 eV Core-core repulsion = 23399.067819 eV Total energy + Delta-G solvation = -3983.638806 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.52211 -39.78084 -38.06756 -36.02885 -35.26190 -34.87534 -32.45300 -31.93407 -30.23225 -29.20580 -28.59843 -26.20378 -25.48011 -25.07835 -23.65347 -22.03943 -20.79750 -19.59898 -19.30607 -17.99300 -17.72848 -16.80090 -16.45042 -16.05668 -15.93724 -15.39848 -15.29598 -14.82721 -14.59831 -14.47413 -14.39692 -14.02233 -13.76507 -13.72832 -13.52132 -13.13045 -12.93165 -12.86014 -12.83840 -12.59069 -12.21375 -12.16867 -12.07492 -11.75522 -11.71741 -11.50985 -11.17313 -11.07092 -11.05655 -10.78942 -10.53280 -9.85531 -9.74319 -9.49616 -9.46499 -9.09322 -9.08269 -8.71226 -8.27545 -6.53520 -6.23690 -3.95080 1.16518 2.74167 2.90466 2.98592 3.09366 3.21846 3.22558 3.27343 3.51222 3.84647 4.13981 4.19259 4.21083 4.43209 4.52091 4.56744 4.83101 4.90030 4.93240 5.00414 5.08108 5.10230 5.11358 5.26511 5.32162 5.41328 5.43742 5.50608 5.52142 5.58362 5.60101 5.65287 5.67874 5.76029 5.82996 5.86490 6.06345 6.12699 6.20780 6.27533 6.32589 7.22827 7.29781 7.56210 7.58486 8.05562 8.32427 8.46012 9.21259 10.83709 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.011918 B = 0.002500 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.814926 B =11198.612304 C =12520.565240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.067 4.067 3 C -0.200 4.200 4 C -0.114 4.114 5 C 0.551 3.449 6 O -0.535 6.535 7 N -0.727 5.727 8 C 0.130 3.870 9 C -0.110 4.110 10 H 0.105 0.895 11 C 0.108 3.892 12 N -0.627 5.627 13 C 0.555 3.445 14 O -0.511 6.511 15 C -0.147 4.147 16 S -0.059 6.059 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.282 1.282 24 H -0.274 1.274 25 C 0.071 3.929 26 C 0.099 3.901 27 H 0.076 0.924 28 O -0.559 6.559 29 H 0.051 0.949 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.124 0.876 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.400 0.600 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.269 0.731 44 H 0.082 0.918 45 H 0.088 0.912 46 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.986 -8.715 -23.671 26.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.086 4.086 3 C -0.203 4.203 4 C -0.171 4.171 5 C 0.340 3.660 6 O -0.414 6.414 7 N -0.380 5.380 8 C 0.006 3.994 9 C -0.130 4.130 10 H 0.123 0.877 11 C -0.015 4.015 12 N -0.366 5.366 13 C 0.344 3.656 14 O -0.384 6.384 15 C -0.298 4.298 16 S 0.168 5.832 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.054 4.054 26 C 0.039 3.961 27 H 0.094 0.906 28 O -0.365 6.365 29 H 0.070 0.930 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.142 0.858 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.236 0.764 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.107 0.893 40 H 0.092 0.908 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.100 0.900 45 H 0.107 0.893 46 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 6.987 -10.683 -22.395 25.778 hybrid contribution -0.836 2.685 -0.383 2.838 sum 6.151 -7.998 -22.778 24.913 Atomic orbital electron populations 1.21050 0.91683 1.01035 1.04262 1.23646 0.97320 0.96640 0.91021 1.21437 0.96407 0.93090 1.09319 1.20772 0.90875 1.02759 1.02723 1.18394 0.87262 0.84014 0.76313 1.90804 1.13560 1.87542 1.49474 1.45892 1.10381 1.05582 1.76099 1.21331 0.93886 0.81218 1.02945 1.22317 0.98420 0.93261 0.98956 0.87720 1.22341 0.94833 0.94931 0.89380 1.48917 1.56051 1.23752 1.07841 1.20037 0.79167 0.87404 0.78996 1.90724 1.52746 1.34976 1.59948 1.23510 1.01397 0.99110 1.05758 1.85434 1.70740 1.31987 0.95037 1.22803 1.39746 1.08207 0.97689 0.90982 1.24993 0.95947 0.97258 0.95355 1.70005 1.43630 1.33493 1.03102 0.86217 0.79990 0.81635 0.77616 1.19916 1.20776 1.19931 1.23150 1.01882 0.91650 0.88690 1.22611 0.97857 0.90966 0.84684 0.90611 1.86521 1.68990 1.35412 1.45531 0.92984 0.89901 0.90134 0.85808 0.90839 0.91152 0.91848 0.76445 0.90738 0.90946 0.89344 0.90788 0.89244 0.89283 0.92077 0.90028 0.89341 0.76832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.22 8.45 36.01 0.30 -0.91 16 2 C -0.07 -0.57 9.95 -36.13 -0.36 -0.93 16 3 C -0.20 -1.84 6.00 -102.84 -0.62 -2.46 16 4 C -0.11 -0.70 9.61 36.01 0.35 -0.36 16 5 C 0.55 6.54 7.72 -12.67 -0.10 6.44 16 6 O -0.54 -8.10 13.07 5.26 0.07 -8.03 16 7 N -0.73 -7.06 5.11 -61.49 -0.31 -7.37 16 8 C 0.13 1.33 4.79 -4.04 -0.02 1.31 16 9 C -0.11 -0.95 2.90 -89.22 -0.26 -1.21 16 10 H 0.10 0.79 7.98 -51.93 -0.41 0.37 16 11 C 0.11 1.19 6.48 -2.41 -0.02 1.17 16 12 N -0.63 -8.61 3.32 -169.18 -0.56 -9.17 16 13 C 0.55 10.54 7.93 -10.99 -0.09 10.45 16 14 O -0.51 -11.75 16.13 5.56 0.09 -11.66 16 15 C -0.15 -2.98 5.14 36.00 0.18 -2.79 16 16 S -0.06 -1.59 20.57 -107.50 -2.21 -3.81 16 17 C -0.54 -15.21 9.50 30.94 0.29 -14.91 16 18 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.15 13.22 55.49 0.73 -25.42 16 21 Si 0.92 21.32 29.55 -169.99 -5.02 16.29 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 C 0.07 0.69 6.66 -2.32 -0.02 0.67 16 26 C 0.10 0.82 4.07 -25.34 -0.10 0.72 16 27 H 0.08 0.60 7.71 -51.93 -0.40 0.20 16 28 O -0.56 -4.09 13.27 -35.23 -0.47 -4.56 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.99 7.22 -51.93 -0.37 0.62 16 31 H 0.08 0.88 7.22 -51.93 -0.37 0.51 16 32 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.34 8.07 -51.93 -0.42 -0.08 16 35 H 0.06 0.31 6.70 -51.93 -0.35 -0.03 16 36 H 0.40 2.88 6.51 -40.82 -0.27 2.62 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.09 1.10 7.31 -51.93 -0.38 0.72 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 42 H 0.09 1.66 7.95 -51.92 -0.41 1.25 16 43 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.08 0.71 8.08 -51.93 -0.42 0.29 16 45 H 0.09 0.82 7.31 -51.93 -0.38 0.44 16 46 H 0.38 1.28 9.11 45.56 0.42 1.70 16 LS Contribution 394.46 15.07 5.94 5.94 Total: -1.00 -37.58 394.46 -8.56 -46.14 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -6.28 Total: 2.44 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: -0.54 Total: -0.79 kcal Atomic # 7 Polarization: -41.82 SS G_CDS: -0.14 Total: -41.96 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.31 Total: -24.25 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -37.58 -8.56 -46.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081393018.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.525 kcal (2) G-P(sol) polarization free energy of solvation -37.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds