Wall clock time and date at job start Wed Apr 1 2020 00:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 115.56381 * 2 1 4 4 C 1.53000 * 117.49858 * 214.30586 * 2 1 3 5 5 C 1.53004 * 60.00172 * 252.51791 * 4 2 1 6 6 H 1.08993 * 117.52111 * 107.48777 * 5 4 2 7 7 C 1.50700 * 117.49683 * 252.51369 * 5 4 2 8 8 O 1.21283 * 119.99879 * 68.61653 * 7 5 4 9 9 N 1.34778 * 120.00296 * 248.62472 * 7 5 4 10 10 C 1.46923 * 120.31952 * 359.97223 * 9 7 5 11 11 C 1.53432 * 108.35586 * 235.24902 * 10 9 7 12 12 N 1.46885 * 108.41445 * 309.34046 * 11 10 9 13 13 C 1.36935 * 120.34471 * 235.61290 * 12 11 10 14 14 H 1.07998 * 119.99628 * 146.01755 * 13 12 11 15 15 C 1.38811 * 120.00510 * 326.01978 * 13 12 11 16 16 N 1.31621 * 120.00278 * 163.59334 * 15 13 12 17 17 Si 1.86799 * 119.99823 * 343.59419 * 15 13 12 18 18 H 1.48509 * 109.47202 * 92.46649 * 17 15 13 19 19 H 1.48500 * 109.47187 * 212.46676 * 17 15 13 20 20 H 1.48506 * 109.47093 * 332.47023 * 17 15 13 21 21 C 1.47865 * 119.05165 * 56.00929 * 12 11 10 22 22 H 1.08992 * 110.32532 * 66.78975 * 21 12 11 23 23 C 1.54142 * 108.81892 * 187.92492 * 21 12 11 24 24 S 1.82909 * 105.17412 * 90.89878 * 23 21 12 25 25 O 1.42098 * 109.34907 * 115.33998 * 24 23 21 26 26 O 1.42101 * 109.34961 * 248.40020 * 24 23 21 27 27 C 1.84810 * 97.16829 * 1.98847 * 24 23 21 28 28 C 1.46537 * 120.32328 * 180.02562 * 9 7 5 29 29 H 1.08996 * 110.23864 * 5.03466 * 28 9 7 30 30 H 1.08993 * 109.47579 * 274.31262 * 1 2 3 31 31 H 1.09002 * 109.47020 * 34.31310 * 1 2 3 32 32 H 1.09003 * 109.46924 * 154.31390 * 1 2 3 33 33 H 1.08993 * 109.47001 * 205.68593 * 3 2 1 34 34 H 1.08999 * 109.46737 * 325.68737 * 3 2 1 35 35 H 1.08998 * 109.46853 * 85.68789 * 3 2 1 36 36 H 1.08999 * 117.50069 * 145.02311 * 4 2 1 37 37 H 1.08996 * 117.49833 * 0.02562 * 4 2 1 38 38 H 1.09000 * 109.68412 * 354.96510 * 10 9 7 39 39 H 1.08995 * 109.68670 * 115.53294 * 10 9 7 40 40 H 1.09008 * 109.67704 * 69.06889 * 11 10 9 41 41 H 1.08999 * 109.67985 * 189.60480 * 11 10 9 42 42 H 0.96991 * 119.99934 * 180.02562 * 16 15 13 43 43 H 1.09001 * 110.30487 * 209.82017 * 23 21 12 44 44 H 1.08999 * 110.30601 * 331.97027 * 23 21 12 45 45 H 1.09004 * 110.79430 * 264.92184 * 27 24 23 46 46 H 1.09001 * 111.39781 * 141.04891 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2364 -1.1211 -0.7649 5 6 2.2363 -1.1211 0.7651 6 1 1.6111 -1.8583 1.2687 7 6 3.5291 -0.7812 1.4610 8 8 3.9717 0.3464 1.4013 9 7 4.1936 -1.7303 2.1496 10 6 3.6637 -3.0985 2.2269 11 6 3.5305 -3.4822 3.7065 12 7 4.8054 -3.1945 4.3770 13 6 5.4634 -4.1794 5.0640 14 1 6.5431 -4.1962 5.0822 15 6 4.7427 -5.1564 5.7372 16 7 5.3371 -6.2669 6.1191 17 14 2.9292 -4.8950 6.1009 18 1 2.1153 -5.4767 5.0033 19 1 2.5803 -5.5603 7.3819 20 1 2.6501 -3.4403 6.2065 21 6 5.3612 -1.8261 4.3061 22 1 4.7237 -1.1298 4.8508 23 6 6.7805 -1.8342 4.9074 24 16 7.8964 -2.1654 3.4965 25 8 8.7298 -1.0350 3.2800 26 8 8.4764 -3.4538 3.6473 27 6 6.5969 -2.2247 2.1837 28 6 5.4510 -1.4074 2.8294 29 1 5.6582 -0.3402 2.7518 30 1 -0.3634 0.0773 1.0247 31 1 -0.3633 0.8488 -0.5793 32 1 -0.3633 -0.9262 -0.4454 33 1 3.1824 1.3083 -0.4454 34 1 1.5812 2.0742 -0.5793 35 1 2.2773 1.7413 1.0248 36 1 3.1715 -0.8753 -1.2682 37 1 1.6112 -1.8583 -1.2685 38 1 2.6860 -3.1411 1.7470 39 1 4.3478 -3.7858 1.7294 40 1 2.7337 -2.8979 4.1669 41 1 3.3029 -4.5448 3.7911 42 1 4.8334 -6.9496 6.5891 43 1 7.0089 -0.8650 5.3508 44 1 6.8705 -2.6231 5.6541 45 1 6.2820 -3.2514 1.9970 46 1 6.9392 -1.7509 1.2637 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094627870.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:52:47 Heat of formation + Delta-G solvation = -26.185805 kcal Electronic energy + Delta-G solvation = -30203.866707 eV Core-core repulsion = 26223.544150 eV Total energy + Delta-G solvation = -3980.322557 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -40.62142 -38.72793 -36.87166 -36.58059 -35.57063 -34.50133 -33.60327 -31.59396 -29.89950 -28.92805 -27.86384 -27.54056 -25.81568 -24.34136 -22.98633 -22.42256 -20.51426 -19.29774 -18.55869 -18.32358 -17.63170 -16.74595 -16.51972 -16.10842 -15.44924 -15.41377 -14.98193 -14.86261 -14.72526 -14.34952 -14.16240 -14.00806 -13.76806 -13.32307 -13.14176 -13.02372 -12.69588 -12.56221 -12.33840 -12.13920 -12.04865 -11.94829 -11.81019 -11.69075 -11.62357 -11.56039 -11.36765 -11.16821 -10.79425 -10.58826 -10.41223 -10.35051 -10.20130 -9.96272 -9.88218 -9.69549 -9.37449 -8.99055 -8.53961 -7.19062 -6.17519 -3.67909 0.44598 2.50159 2.78904 3.10589 3.11608 3.31109 3.32081 3.61322 3.97468 4.26963 4.32425 4.35753 4.48051 4.56491 4.62387 4.74879 4.83479 4.93163 4.96117 5.04728 5.07139 5.20435 5.34842 5.41352 5.49343 5.52377 5.52454 5.60211 5.69223 5.71899 5.76692 5.80493 5.87760 5.92560 6.03091 6.06922 6.11187 6.14744 6.32550 6.39474 6.43183 6.62400 7.49550 7.67017 8.07988 8.25354 8.60760 9.41182 9.75261 10.95423 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.010823 B = 0.005260 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.420179 B = 5321.455961 C = 7301.380759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.095 4.095 3 C -0.102 4.102 4 C -0.145 4.145 5 C -0.188 4.188 6 H 0.125 0.875 7 C 0.543 3.457 8 O -0.542 6.542 9 N -0.583 5.583 10 C 0.084 3.916 11 C 0.113 3.887 12 N -0.601 5.601 13 C -0.292 4.292 14 H 0.102 0.898 15 C 0.042 3.958 16 N -0.889 5.889 17 Si 0.882 3.118 18 H -0.285 1.285 19 H -0.299 1.299 20 H -0.268 1.268 21 C 0.171 3.829 22 H 0.072 0.928 23 C -0.584 4.584 24 S 2.375 3.625 25 O -0.955 6.955 26 O -0.923 6.923 27 C -0.581 4.581 28 C 0.132 3.868 29 H 0.117 0.883 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.046 0.954 35 H 0.067 0.933 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.036 0.964 41 H 0.089 0.911 42 H 0.267 0.733 43 H 0.130 0.870 44 H 0.175 0.825 45 H 0.145 0.855 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.972 9.537 -10.908 16.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.096 4.096 3 C -0.159 4.159 4 C -0.183 4.183 5 C -0.209 4.209 6 H 0.142 0.858 7 C 0.332 3.668 8 O -0.420 6.420 9 N -0.315 5.315 10 C -0.040 4.040 11 C -0.013 4.013 12 N -0.326 5.326 13 C -0.419 4.419 14 H 0.119 0.881 15 C -0.161 4.161 16 N -0.529 5.529 17 Si 0.711 3.289 18 H -0.212 1.212 19 H -0.227 1.227 20 H -0.193 1.193 21 C 0.063 3.937 22 H 0.089 0.911 23 C -0.715 4.715 24 S 2.558 3.442 25 O -0.952 6.952 26 O -0.920 6.920 27 C -0.711 4.711 28 C 0.025 3.975 29 H 0.135 0.865 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.086 0.914 36 H 0.117 0.883 37 H 0.121 0.879 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.054 0.946 41 H 0.107 0.893 42 H 0.078 0.922 43 H 0.148 0.852 44 H 0.192 0.808 45 H 0.163 0.837 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.707 9.821 -10.868 16.111 hybrid contribution -1.966 -0.240 0.467 2.035 sum -8.673 9.581 -10.401 16.589 Atomic orbital electron populations 1.21394 0.91617 1.02109 1.02200 1.21587 0.94591 0.91898 1.01506 1.21341 0.99540 0.92381 1.02601 1.23196 1.02906 1.01354 0.90834 1.22397 0.97877 1.04853 0.95731 0.85752 1.19704 0.84555 0.84349 0.78212 1.90669 1.68743 1.20577 1.62043 1.47708 1.22532 1.10781 1.50451 1.22529 0.99276 0.82180 1.00012 1.21795 0.88799 1.00880 0.89842 1.44610 1.23475 1.04729 1.59832 1.18973 0.92993 1.02919 1.27046 0.88122 1.25452 0.97826 0.96255 0.96536 1.69803 1.36763 1.06336 1.39975 0.86956 0.86286 0.78434 0.77200 1.21205 1.22717 1.19309 1.21179 0.92032 0.89728 0.90725 0.91073 1.30816 1.09128 1.12944 1.18617 1.09596 0.78412 0.75465 0.80695 1.93564 1.64227 1.52511 1.84860 1.93639 1.74810 1.39059 1.84444 1.30895 1.14955 1.10097 1.15164 1.22190 0.82764 1.00056 0.92472 0.86540 0.91984 0.91725 0.92309 0.91690 0.93489 0.91384 0.88332 0.87927 0.89757 0.90389 0.94618 0.89274 0.92245 0.85172 0.80758 0.83717 0.85521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.94 9.85 37.16 0.37 -0.57 16 2 C -0.10 -0.98 2.70 -154.51 -0.42 -1.39 16 3 C -0.10 -1.16 8.09 37.16 0.30 -0.86 16 4 C -0.15 -1.40 9.52 -26.73 -0.25 -1.65 16 5 C -0.19 -2.14 4.82 -91.77 -0.44 -2.58 16 6 H 0.12 1.27 6.57 -51.93 -0.34 0.93 16 7 C 0.54 7.90 7.45 -10.98 -0.08 7.82 16 8 O -0.54 -9.04 12.50 5.55 0.07 -8.97 16 9 N -0.58 -8.65 2.66 -163.93 -0.44 -9.09 16 10 C 0.08 1.20 6.10 -3.59 -0.02 1.18 16 11 C 0.11 2.03 4.35 -3.61 -0.02 2.01 16 12 N -0.60 -12.02 2.50 -162.95 -0.41 -12.43 16 13 C -0.29 -7.04 8.69 -15.06 -0.13 -7.17 16 14 H 0.10 2.60 5.46 -52.49 -0.29 2.31 16 15 C 0.04 1.08 5.26 -17.43 -0.09 0.99 16 16 N -0.89 -25.03 13.97 55.49 0.78 -24.25 16 17 Si 0.88 19.88 24.40 -169.99 -4.15 15.73 16 18 H -0.28 -6.08 6.71 56.52 0.38 -5.70 16 19 H -0.30 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.27 -5.94 6.63 56.52 0.37 -5.57 16 21 C 0.17 2.92 3.57 -66.19 -0.24 2.68 16 22 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 23 C -0.58 -9.39 6.19 37.75 0.23 -9.15 16 24 S 2.37 39.87 6.04 -107.50 -0.65 39.22 16 25 O -0.95 -17.51 18.15 -57.73 -1.05 -18.56 16 26 O -0.92 -19.34 17.36 -57.73 -1.00 -20.34 16 27 C -0.58 -8.63 6.75 38.14 0.26 -8.38 16 28 C 0.13 2.05 2.92 -66.54 -0.19 1.85 16 29 H 0.12 1.75 7.01 -51.93 -0.36 1.38 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.46 7.92 -51.93 -0.41 0.05 16 32 H 0.06 0.41 7.90 -51.93 -0.41 0.00 16 33 H 0.06 0.82 7.01 -51.93 -0.36 0.46 16 34 H 0.05 0.44 7.92 -51.93 -0.41 0.03 16 35 H 0.07 0.89 7.26 -51.93 -0.38 0.51 16 36 H 0.10 1.01 8.05 -51.93 -0.42 0.59 16 37 H 0.10 0.78 8.05 -51.93 -0.42 0.37 16 38 H 0.08 0.96 5.47 -51.93 -0.28 0.68 16 39 H 0.08 1.11 7.02 -51.93 -0.36 0.75 16 40 H 0.04 0.64 7.06 -51.92 -0.37 0.27 16 41 H 0.09 1.72 4.89 -51.93 -0.25 1.47 16 42 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 43 H 0.13 1.66 8.14 -51.93 -0.42 1.24 16 44 H 0.18 3.20 5.52 -51.93 -0.29 2.91 16 45 H 0.14 2.23 6.69 -51.93 -0.35 1.88 16 46 H 0.13 1.63 8.14 -51.93 -0.42 1.20 16 LS Contribution 354.98 15.07 5.35 5.35 Total: -1.00 -32.99 354.98 -8.81 -41.79 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -6.58 Total: 6.77 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: -0.73 Total: -15.23 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: -0.07 Total: -45.77 kcal Atomic # 8 Polarization: -45.89 SS G_CDS: -1.98 Total: -47.87 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -4.15 Total: 15.73 kcal Atomic # 16 Polarization: 39.87 SS G_CDS: -0.65 Total: 39.22 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.99 -8.81 -41.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094627870.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.609 kcal (2) G-P(sol) polarization free energy of solvation -32.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds