Wall clock time and date at job start Wed Apr 1 2020 00:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 110.28123 * 2 1 4 4 O 1.21282 * 119.99632 * 237.88325 * 3 2 1 5 5 N 1.34777 * 120.00391 * 57.88261 * 3 2 1 6 6 C 1.46499 * 119.99852 * 179.97438 * 5 3 2 7 7 H 1.08998 * 110.56108 * 36.91067 * 6 5 3 8 8 C 1.54854 * 110.76109 * 159.90022 * 6 5 3 9 9 C 1.57786 * 103.27386 * 118.03556 * 8 6 5 10 10 H 1.08998 * 115.64834 * 158.98392 * 9 8 6 11 11 C 1.55845 * 105.80316 * 289.04661 * 9 8 6 12 12 C 1.54222 * 103.56631 * 71.15824 * 11 9 8 13 13 C 1.55838 * 103.56445 * 0.02562 * 12 11 9 14 14 H 1.09007 * 115.56027 * 158.72588 * 13 12 11 15 15 N 1.50233 * 101.05353 * 32.84922 * 13 12 11 16 16 C 1.36935 * 130.83988 * 125.99138 * 15 13 12 17 17 H 1.08002 * 120.00172 * 10.17050 * 16 15 13 18 18 C 1.38819 * 120.00134 * 190.17002 * 16 15 13 19 19 N 1.31619 * 119.99655 * 9.12939 * 18 16 15 20 20 Si 1.86799 * 120.00013 * 189.13178 * 18 16 15 21 21 H 1.48496 * 109.47310 * 265.01829 * 20 18 16 22 22 H 1.48501 * 109.46953 * 145.01565 * 20 18 16 23 23 H 1.48504 * 109.47255 * 25.01828 * 20 18 16 24 24 C 1.54170 * 110.40405 * 122.16733 * 2 1 3 25 25 C 1.53869 * 108.70180 * 91.03735 * 24 2 1 26 26 C 1.55046 * 106.62707 * 47.18378 * 25 24 2 27 27 S 1.82909 * 110.32176 * 237.88177 * 2 1 3 28 28 O 1.42109 * 109.35429 * 356.51883 * 27 2 1 29 29 O 1.42098 * 109.35484 * 129.59040 * 27 2 1 30 30 H 1.08994 * 109.47070 * 60.70596 * 1 2 3 31 31 H 1.08998 * 109.47349 * 180.70640 * 1 2 3 32 32 H 1.08998 * 109.47029 * 300.70467 * 1 2 3 33 33 H 0.96998 * 120.00145 * 0.02562 * 5 3 2 34 34 H 1.08999 * 110.63098 * 237.04371 * 8 6 5 35 35 H 1.09003 * 110.62508 * 359.91007 * 8 6 5 36 36 H 1.09002 * 110.62752 * 189.56263 * 11 9 8 37 37 H 1.09005 * 110.62167 * 312.42208 * 11 9 8 38 38 H 1.09002 * 110.64272 * 241.43485 * 12 11 9 39 39 H 1.08994 * 110.49324 * 118.49845 * 12 11 9 40 40 H 0.96998 * 119.99545 * 179.97438 * 19 18 16 41 41 H 1.08998 * 109.64634 * 210.89092 * 24 2 1 42 42 H 1.09008 * 109.64382 * 331.18848 * 24 2 1 43 43 H 1.08998 * 110.03222 * 287.88709 * 25 24 2 44 44 H 1.09007 * 110.02908 * 166.47123 * 25 24 2 45 45 H 1.08994 * 110.79062 * 199.29733 * 26 25 24 46 46 H 1.09003 * 110.79052 * 75.82891 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0524 1.4136 0.0000 4 8 2.7863 1.7887 -0.8896 5 7 1.7039 2.2608 0.9885 6 6 2.2123 3.6348 0.9887 7 1 2.2654 4.0235 -0.0282 8 6 1.3292 4.5467 1.8757 9 6 2.3251 5.0346 2.9980 10 1 2.0364 5.9463 3.5211 11 6 2.6005 3.7883 3.8922 12 6 3.4716 2.8851 2.9955 13 6 3.6096 3.7036 1.6766 14 1 4.4581 3.4390 1.0455 15 7 3.6009 5.1090 2.2075 16 6 4.4861 6.1387 2.0303 17 1 5.2721 6.0545 1.2944 18 6 4.3731 7.2908 2.7964 19 7 3.5357 7.3267 3.8112 20 14 5.4094 8.7900 2.3871 21 1 6.6400 8.7831 3.2182 22 1 4.6296 10.0223 2.6674 23 1 5.7825 8.7566 0.9500 24 6 2.0675 -0.7693 1.2232 25 6 2.2642 -2.2441 0.8310 26 6 3.0142 -2.2461 -0.5260 27 16 2.1652 -0.9119 -1.4527 28 8 1.0738 -1.4628 -2.1771 29 8 3.1300 -0.1140 -2.1247 30 1 -0.3633 0.5028 -0.8962 31 1 -0.3634 -1.0275 0.0127 32 1 -0.3633 0.5247 0.8836 33 1 1.1172 1.9607 1.7002 34 1 0.9444 5.3875 1.2986 35 1 0.5102 3.9776 2.3157 36 1 3.1465 4.0739 4.7914 37 1 1.6672 3.2893 4.1533 38 1 2.9726 1.9344 2.8075 39 1 4.4486 2.7237 3.4509 40 1 3.4570 8.1316 4.3468 41 1 3.0209 -0.3425 1.5345 42 1 1.3522 -0.7003 2.0428 43 1 1.2966 -2.7341 0.7234 44 1 2.8599 -2.7553 1.5874 45 1 2.8961 -3.2042 -1.0319 46 1 4.0688 -2.0089 -0.3855 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096143419.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:51:55 Heat of formation + Delta-G solvation = -50.253826 kcal Electronic energy + Delta-G solvation = -29851.110931 eV Core-core repulsion = 25869.744706 eV Total energy + Delta-G solvation = -3981.366225 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -40.34281 -38.68914 -37.32451 -36.60256 -35.94261 -34.03794 -32.63088 -32.09823 -29.40330 -28.96301 -27.56079 -27.28185 -25.03488 -24.12055 -22.08254 -21.57242 -20.70144 -19.60892 -18.90452 -18.53671 -17.63648 -17.02364 -16.69221 -16.26384 -15.72664 -15.22863 -15.16076 -14.86171 -14.58896 -14.38685 -14.07024 -13.99514 -13.77057 -13.24068 -13.04324 -12.70879 -12.45079 -12.36286 -12.20793 -12.14050 -12.00976 -11.88150 -11.77307 -11.53306 -11.37321 -11.02797 -10.99596 -10.93662 -10.86861 -10.82750 -10.41719 -10.22950 -10.08811 -9.98758 -9.64745 -9.48332 -9.25521 -8.89539 -8.56986 -6.91522 -5.78720 -3.13323 -0.18879 2.34645 2.58603 3.06429 3.38616 3.44618 3.44967 3.47454 3.83506 4.05058 4.20731 4.26605 4.38508 4.45873 4.55582 4.66865 5.06851 5.12652 5.14958 5.18469 5.25753 5.33011 5.34962 5.43967 5.49589 5.53053 5.71138 5.74113 5.79920 5.93357 6.01258 6.05015 6.18996 6.28465 6.48764 6.52336 6.60007 6.76934 6.91410 6.95293 7.22115 7.51154 7.61095 7.74128 8.08579 8.31656 9.05760 9.69741 10.51736 11.33881 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.022816 B = 0.003143 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.929397 B = 8906.835831 C = 9273.149338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.562 4.562 3 C 0.531 3.469 4 O -0.500 6.500 5 N -0.699 5.699 6 C 0.128 3.872 7 H 0.085 0.915 8 C -0.144 4.144 9 C 0.161 3.839 10 H 0.142 0.858 11 C -0.130 4.130 12 C -0.130 4.130 13 C 0.127 3.873 14 H 0.086 0.914 15 N -0.589 5.589 16 C -0.214 4.214 17 H 0.078 0.922 18 C -0.009 4.009 19 N -0.919 5.919 20 Si 0.913 3.087 21 H -0.290 1.290 22 H -0.290 1.290 23 H -0.280 1.280 24 C -0.106 4.106 25 C -0.116 4.116 26 C -0.597 4.597 27 S 2.407 3.593 28 O -0.933 6.933 29 O -0.888 6.888 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.396 0.604 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.043 0.957 38 H 0.049 0.951 39 H 0.051 0.949 40 H 0.253 0.747 41 H 0.091 0.909 42 H 0.100 0.900 43 H 0.088 0.912 44 H 0.100 0.900 45 H 0.137 0.863 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.802 -20.677 -1.728 22.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.653 4.653 3 C 0.313 3.687 4 O -0.374 6.374 5 N -0.350 5.350 6 C 0.022 3.978 7 H 0.103 0.897 8 C -0.184 4.184 9 C 0.054 3.946 10 H 0.159 0.841 11 C -0.169 4.169 12 C -0.170 4.170 13 C 0.018 3.982 14 H 0.104 0.896 15 N -0.309 5.309 16 C -0.342 4.342 17 H 0.096 0.904 18 C -0.205 4.205 19 N -0.567 5.567 20 Si 0.743 3.257 21 H -0.217 1.217 22 H -0.216 1.216 23 H -0.206 1.206 24 C -0.145 4.145 25 C -0.155 4.155 26 C -0.726 4.726 27 S 2.585 3.415 28 O -0.930 6.930 29 O -0.885 6.885 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.230 0.770 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.110 0.890 42 H 0.118 0.882 43 H 0.106 0.894 44 H 0.118 0.882 45 H 0.155 0.845 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.219 -19.861 -3.282 21.385 hybrid contribution 0.329 0.346 1.171 1.264 sum -6.890 -19.515 -2.111 20.803 Atomic orbital electron populations 1.21531 0.87470 1.04346 1.04438 1.30513 1.07974 1.06111 1.20667 1.19103 0.81637 0.84716 0.83287 1.91007 1.34843 1.76274 1.35296 1.46089 1.50131 1.12832 1.25948 1.22703 0.95919 0.78660 1.00506 0.89671 1.23629 0.97331 0.98118 0.99357 1.23801 0.84276 0.96640 0.89844 0.84125 1.22828 0.97418 0.97610 0.99038 1.22786 0.99290 0.97045 0.97871 1.23215 0.94407 0.86965 0.93619 0.89572 1.46483 1.23008 1.06273 1.55142 1.19045 1.07444 0.92419 1.15259 0.90396 1.24738 1.00064 0.98778 0.96926 1.69659 1.39927 1.27847 1.19218 0.86078 0.79274 0.82418 0.77902 1.21709 1.21633 1.20559 1.22089 1.03701 0.93035 0.95671 1.22170 1.01243 0.96670 0.95383 1.30752 1.12723 1.18555 1.10593 1.09069 0.77097 0.77954 0.77389 1.93597 1.53846 1.78196 1.67360 1.93727 1.59630 1.65817 1.69294 0.90787 0.90035 0.90220 0.76979 0.91535 0.92729 0.92279 0.93852 0.93249 0.92998 0.93648 0.89006 0.88166 0.89371 0.88192 0.84516 0.84217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 7.77 37.16 0.29 -0.64 16 2 C -0.56 -5.47 0.93 -91.16 -0.08 -5.56 16 3 C 0.53 7.55 6.40 -10.99 -0.07 7.48 16 4 O -0.50 -9.56 13.70 -18.57 -0.25 -9.81 16 5 N -0.70 -9.42 3.54 -51.37 -0.18 -9.60 16 6 C 0.13 2.27 3.08 -65.40 -0.20 2.07 16 7 H 0.09 1.72 7.70 -51.93 -0.40 1.32 16 8 C -0.14 -2.56 6.31 -23.13 -0.15 -2.71 16 9 C 0.16 3.49 4.68 -61.68 -0.29 3.20 16 10 H 0.14 3.50 5.90 -51.93 -0.31 3.20 16 11 C -0.13 -2.40 6.43 -24.57 -0.16 -2.56 16 12 C -0.13 -2.29 6.31 -24.58 -0.16 -2.44 16 13 C 0.13 2.59 5.30 -62.78 -0.33 2.25 16 14 H 0.09 1.86 8.14 -51.93 -0.42 1.43 16 15 N -0.59 -14.34 2.96 -144.58 -0.43 -14.77 16 16 C -0.21 -5.84 10.55 -15.06 -0.16 -6.00 16 17 H 0.08 2.11 7.85 -52.49 -0.41 1.70 16 18 C -0.01 -0.25 5.47 -17.43 -0.10 -0.34 16 19 N -0.92 -25.78 10.75 55.49 0.60 -25.18 16 20 Si 0.91 21.88 29.56 -169.99 -5.03 16.86 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 C -0.11 -0.69 5.44 -25.67 -0.14 -0.83 16 25 C -0.12 -0.56 6.48 -25.20 -0.16 -0.73 16 26 C -0.60 -3.90 7.31 38.24 0.28 -3.62 16 27 S 2.41 27.04 5.77 -107.50 -0.62 26.42 16 28 O -0.93 -12.10 17.24 -57.73 -1.00 -13.09 16 29 O -0.89 -14.62 15.27 -67.18 -1.03 -15.64 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.47 8.10 -51.93 -0.42 0.05 16 32 H 0.08 0.48 7.50 -51.93 -0.39 0.09 16 33 H 0.40 4.14 7.40 -40.82 -0.30 3.84 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.05 0.79 7.45 -51.93 -0.39 0.40 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.04 0.66 7.91 -51.93 -0.41 0.25 16 38 H 0.05 0.70 6.56 -51.93 -0.34 0.36 16 39 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 41 H 0.09 0.67 7.85 -51.93 -0.41 0.26 16 42 H 0.10 0.44 7.88 -51.92 -0.41 0.03 16 43 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 44 H 0.10 0.35 8.14 -51.92 -0.42 -0.08 16 45 H 0.14 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.14 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 366.23 15.07 5.52 5.52 Total: -1.00 -35.83 366.23 -10.96 -46.80 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -7.12 Total: 2.93 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -1.43 Total: -10.43 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: -0.01 Total: -49.55 kcal Atomic # 8 Polarization: -36.27 SS G_CDS: -2.28 Total: -38.55 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.86 kcal Atomic # 16 Polarization: 27.04 SS G_CDS: -0.62 Total: 26.42 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.83 -10.96 -46.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096143419.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.455 kcal (2) G-P(sol) polarization free energy of solvation -35.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds