Wall clock time and date at job start Wed Apr 1 2020 00:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 110.28372 * 2 1 4 4 O 1.21278 * 119.99824 * 237.88441 * 3 2 1 5 5 N 1.34774 * 119.99879 * 57.88438 * 3 2 1 6 6 C 1.46507 * 119.99589 * 179.97438 * 5 3 2 7 7 H 1.09000 * 110.68350 * 32.01691 * 6 5 3 8 8 C 1.55873 * 111.60239 * 269.01876 * 6 5 3 9 9 C 1.55849 * 103.52949 * 242.19618 * 8 6 5 10 10 H 1.08998 * 115.56396 * 158.20764 * 9 8 6 11 11 C 1.55841 * 105.73762 * 287.38784 * 9 8 6 12 12 C 1.55872 * 102.97598 * 71.13107 * 11 9 8 13 13 C 1.55837 * 103.52820 * 0.87997 * 12 11 9 14 14 H 1.09002 * 115.56222 * 158.20615 * 13 12 11 15 15 N 1.50237 * 101.05245 * 32.33422 * 13 12 11 16 16 C 1.36942 * 130.84274 * 126.05241 * 15 13 12 17 17 H 1.07997 * 119.99519 * 5.50619 * 16 15 13 18 18 C 1.38812 * 119.99950 * 185.51085 * 16 15 13 19 19 N 1.31617 * 120.00384 * 9.34370 * 18 16 15 20 20 Si 1.86803 * 119.99626 * 189.34194 * 18 16 15 21 21 H 1.48500 * 109.46985 * 94.01426 * 20 18 16 22 22 H 1.48504 * 109.46788 * 214.01321 * 20 18 16 23 23 H 1.48496 * 109.47172 * 334.01019 * 20 18 16 24 24 C 1.54171 * 110.40325 * 122.17069 * 2 1 3 25 25 C 1.53875 * 108.70135 * 91.03486 * 24 2 1 26 26 C 1.55050 * 106.62481 * 47.18251 * 25 24 2 27 27 S 1.82916 * 110.31955 * 237.88403 * 2 1 3 28 28 O 1.42103 * 109.35370 * 356.51933 * 27 2 1 29 29 O 1.42096 * 109.35700 * 129.72124 * 27 2 1 30 30 H 1.09008 * 109.47224 * 60.70047 * 1 2 3 31 31 H 1.08993 * 109.47636 * 180.70137 * 1 2 3 32 32 H 1.09003 * 109.47159 * 300.70804 * 1 2 3 33 33 H 0.97000 * 120.00529 * 0.02562 * 5 3 2 34 34 H 1.08998 * 111.10227 * 123.42889 * 8 6 5 35 35 H 1.09004 * 110.20738 * 0.52743 * 8 6 5 36 36 H 1.09000 * 110.62549 * 190.50208 * 11 9 8 37 37 H 1.09000 * 110.62606 * 313.51802 * 11 9 8 38 38 H 1.08997 * 111.10384 * 242.11379 * 12 11 9 39 39 H 1.09001 * 110.06817 * 119.15510 * 12 11 9 40 40 H 0.96995 * 120.00188 * 179.97438 * 19 18 16 41 41 H 1.08994 * 109.64761 * 210.88818 * 24 2 1 42 42 H 1.08997 * 109.64342 * 331.18928 * 24 2 1 43 43 H 1.09003 * 110.03071 * 287.89056 * 25 24 2 44 44 H 1.09001 * 110.02542 * 166.47328 * 25 24 2 45 45 H 1.09000 * 110.79169 * 199.29542 * 26 25 24 46 46 H 1.09005 * 110.79247 * 75.83180 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0524 1.4136 0.0000 4 8 2.7864 1.7887 -0.8896 5 7 1.7040 2.2607 0.9886 6 6 2.2124 3.6348 0.9888 7 1 2.3479 3.9953 -0.0309 8 6 3.5500 3.7516 1.7806 9 6 3.1997 4.7248 2.9464 10 1 3.8512 4.6678 3.8184 11 6 3.0693 6.1347 2.2954 12 6 1.7430 6.0242 1.4840 13 6 1.2539 4.5746 1.7806 14 1 0.1893 4.3970 1.6283 15 7 1.7561 4.3825 3.1834 16 6 1.1003 4.0097 4.3263 17 1 0.0623 3.7148 4.2814 18 6 1.7695 4.0109 5.5424 19 7 2.9708 4.5413 5.6320 20 14 0.9652 3.2599 7.0518 21 1 1.4002 1.8471 7.1932 22 1 1.3674 4.0249 8.2594 23 1 -0.5114 3.3107 6.9029 24 6 2.0675 -0.7694 1.2231 25 6 2.2641 -2.2442 0.8309 26 6 3.0141 -2.2461 -0.5262 27 16 2.1652 -0.9119 -1.4528 28 8 1.0737 -1.4627 -2.1772 29 8 3.1321 -0.1152 -2.1232 30 1 -0.3634 0.5029 -0.8963 31 1 -0.3634 -1.0275 0.0126 32 1 -0.3633 0.5248 0.8836 33 1 1.1172 1.9606 1.7003 34 1 4.3402 4.1688 1.1565 35 1 3.8437 2.7766 2.1695 36 1 3.0078 6.9073 3.0618 37 1 3.9052 6.3257 1.6224 38 1 1.9231 6.1580 0.4174 39 1 1.0204 6.7551 1.8471 40 1 3.4383 4.5425 6.4819 41 1 3.0208 -0.3427 1.5345 42 1 1.3522 -0.7004 2.0427 43 1 1.2964 -2.7342 0.7232 44 1 2.8597 -2.7554 1.5873 45 1 2.8960 -3.2043 -1.0322 46 1 4.0687 -2.0090 -0.3858 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098013193.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:52:02 Heat of formation + Delta-G solvation = -56.731775 kcal Electronic energy + Delta-G solvation = -29888.372608 eV Core-core repulsion = 25906.725479 eV Total energy + Delta-G solvation = -3981.647130 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.145 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -40.11899 -38.69309 -37.24734 -36.51774 -35.87912 -33.89299 -32.66303 -32.18940 -29.15125 -28.83033 -27.75260 -27.15696 -24.88860 -24.20478 -22.11560 -21.51453 -20.03614 -19.87433 -18.94192 -18.51842 -17.44150 -17.03807 -16.79345 -16.15918 -15.73467 -15.30061 -14.92867 -14.80852 -14.58725 -14.17419 -14.05110 -13.79370 -13.56254 -13.19299 -13.05790 -12.81114 -12.57738 -12.19086 -12.12305 -12.06662 -11.95068 -11.87637 -11.72985 -11.28663 -11.21990 -11.19284 -11.00807 -10.95677 -10.80200 -10.59062 -10.37450 -10.31939 -10.14412 -9.98863 -9.72268 -9.35854 -9.19091 -8.94726 -8.57005 -7.00772 -5.83917 -3.20019 -0.10769 2.42100 2.67709 3.19030 3.29081 3.34678 3.37788 3.52440 3.94181 4.15197 4.32951 4.34044 4.38302 4.51614 4.66362 4.79328 5.07199 5.17416 5.24168 5.27434 5.31989 5.38037 5.48705 5.57463 5.58647 5.62065 5.70250 5.84136 5.85402 5.97457 6.05297 6.12022 6.22448 6.38850 6.42561 6.54763 6.69720 6.76545 6.90203 7.03716 7.26083 7.40797 7.71178 7.81116 8.06462 8.42263 8.98153 9.62751 10.45425 11.27102 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.014315 B = 0.003928 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.578899 B = 7126.759516 C = 8241.457171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.559 4.559 3 C 0.532 3.468 4 O -0.511 6.511 5 N -0.691 5.691 6 C 0.127 3.873 7 H 0.083 0.917 8 C -0.144 4.144 9 C 0.157 3.843 10 H 0.144 0.856 11 C -0.134 4.134 12 C -0.128 4.128 13 C 0.125 3.875 14 H 0.087 0.913 15 N -0.591 5.591 16 C -0.217 4.217 17 H 0.078 0.922 18 C -0.008 4.008 19 N -0.915 5.915 20 Si 0.911 3.089 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.282 1.282 24 C -0.107 4.107 25 C -0.116 4.116 26 C -0.597 4.597 27 S 2.408 3.592 28 O -0.934 6.934 29 O -0.891 6.891 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.404 0.596 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.046 0.954 38 H 0.052 0.948 39 H 0.057 0.943 40 H 0.254 0.746 41 H 0.090 0.910 42 H 0.102 0.898 43 H 0.088 0.912 44 H 0.100 0.900 45 H 0.136 0.864 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.131 -11.498 -8.760 14.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.650 4.650 3 C 0.314 3.686 4 O -0.387 6.387 5 N -0.340 5.340 6 C 0.021 3.979 7 H 0.101 0.899 8 C -0.185 4.185 9 C 0.050 3.950 10 H 0.161 0.839 11 C -0.173 4.173 12 C -0.168 4.168 13 C 0.017 3.983 14 H 0.105 0.895 15 N -0.312 5.312 16 C -0.345 4.345 17 H 0.095 0.905 18 C -0.204 4.204 19 N -0.562 5.562 20 Si 0.742 3.258 21 H -0.218 1.218 22 H -0.218 1.218 23 H -0.207 1.207 24 C -0.145 4.145 25 C -0.155 4.155 26 C -0.726 4.726 27 S 2.586 3.414 28 O -0.931 6.931 29 O -0.888 6.888 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.239 0.761 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.109 0.891 42 H 0.121 0.879 43 H 0.106 0.894 44 H 0.118 0.882 45 H 0.154 0.846 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.730 -11.064 -10.010 15.020 hybrid contribution -0.603 -0.667 2.132 2.314 sum -2.334 -11.731 -7.878 14.322 Atomic orbital electron populations 1.21545 0.87461 1.04378 1.04504 1.30483 1.08010 1.06031 1.20475 1.19119 0.81473 0.84769 0.83259 1.90963 1.35498 1.76445 1.35769 1.45838 1.49898 1.12430 1.25884 1.22828 0.95749 0.80157 0.99191 0.89891 1.23633 0.95168 1.01170 0.98493 1.23532 0.87561 0.88922 0.94990 0.83877 1.23175 0.95317 1.00787 0.98039 1.23042 0.98370 0.97419 0.98016 1.23145 0.95429 0.92800 0.86963 0.89535 1.46567 1.04356 1.78152 1.02099 1.18982 0.94862 1.36802 0.83869 0.90462 1.24704 0.97140 1.01356 0.97208 1.69614 1.13622 1.48429 1.24554 0.86109 0.78312 0.78667 0.82682 1.21784 1.21787 1.20734 1.22085 1.03872 0.92822 0.95749 1.22179 1.01217 0.96802 0.95269 1.30747 1.12656 1.18495 1.10701 1.09009 0.77037 0.77931 0.77385 1.93592 1.53800 1.78191 1.67491 1.93708 1.59534 1.65968 1.69578 0.90873 0.90053 0.89976 0.76088 0.92407 0.92420 0.92205 0.93489 0.92903 0.92465 0.93560 0.89106 0.87913 0.89365 0.88192 0.84574 0.84314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.16 7.77 37.16 0.29 -0.87 16 2 C -0.56 -6.42 0.93 -91.16 -0.08 -6.50 16 3 C 0.53 8.30 6.40 -10.99 -0.07 8.23 16 4 O -0.51 -9.95 13.62 -18.56 -0.25 -10.20 16 5 N -0.69 -10.88 5.01 -50.86 -0.25 -11.13 16 6 C 0.13 2.26 2.84 -64.87 -0.18 2.07 16 7 H 0.08 1.50 7.26 -51.93 -0.38 1.13 16 8 C -0.14 -2.79 6.30 -23.68 -0.15 -2.94 16 9 C 0.16 3.42 4.62 -62.80 -0.29 3.13 16 10 H 0.14 3.60 5.73 -51.93 -0.30 3.31 16 11 C -0.13 -2.61 6.53 -23.68 -0.15 -2.76 16 12 C -0.13 -2.29 6.48 -23.68 -0.15 -2.44 16 13 C 0.13 2.33 5.01 -62.81 -0.31 2.02 16 14 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 15 N -0.59 -13.30 2.97 -145.82 -0.43 -13.73 16 16 C -0.22 -5.41 10.56 -15.06 -0.16 -5.57 16 17 H 0.08 1.86 7.85 -52.49 -0.41 1.44 16 18 C -0.01 -0.20 5.47 -17.43 -0.10 -0.29 16 19 N -0.92 -24.85 10.64 55.49 0.59 -24.26 16 20 Si 0.91 20.53 29.56 -169.99 -5.03 15.50 16 21 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 C -0.11 -0.96 5.44 -25.66 -0.14 -1.10 16 25 C -0.12 -0.78 6.48 -25.19 -0.16 -0.95 16 26 C -0.60 -4.62 7.31 38.24 0.28 -4.34 16 27 S 2.41 29.32 5.77 -107.50 -0.62 28.70 16 28 O -0.93 -12.87 17.24 -57.71 -0.99 -13.87 16 29 O -0.89 -15.07 15.27 -67.18 -1.03 -16.10 16 30 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 31 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 32 H 0.08 0.72 7.50 -51.93 -0.39 0.33 16 33 H 0.40 5.96 8.00 -40.82 -0.33 5.64 16 34 H 0.06 1.06 7.85 -51.93 -0.41 0.65 16 35 H 0.06 1.16 8.01 -51.93 -0.42 0.75 16 36 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.05 0.82 7.85 -51.93 -0.41 0.41 16 38 H 0.05 0.83 7.85 -51.93 -0.41 0.43 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 41 H 0.09 0.91 7.85 -51.93 -0.41 0.50 16 42 H 0.10 0.81 7.88 -51.93 -0.41 0.40 16 43 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.14 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.14 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 368.73 15.07 5.56 5.56 Total: -1.00 -33.62 368.73 -11.05 -44.66 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -7.20 Total: 7.21 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: -1.39 Total: -12.33 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: -0.10 Total: -49.13 kcal Atomic # 8 Polarization: -37.90 SS G_CDS: -2.27 Total: -40.17 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.03 Total: 15.50 kcal Atomic # 16 Polarization: 29.32 SS G_CDS: -0.62 Total: 28.70 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.62 -11.05 -44.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098013193.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.069 kcal (2) G-P(sol) polarization free energy of solvation -33.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds